MD17G1122400.v1.1

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0011236
Physical Location & Seq
Forward (+)
10634789 .. 10636912
2124 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1122400.v1.1.491

Sequence Viewer

Length: 1134 bp
ATGGCGTCCTCTTCAATGGCAGCGAGCGGAGTGCTCACGTCGCGATCGTCGGTGTTGCCGAACTCGAAGCAGACCCAGAACATCAGCCGCCTCTCCTTCAGCGGCTCTCATCTCTCCGGGACCAAAATCCCTGCCCCGCCCCCAGCACCTGTACGAGGAAATGCCCCACTCACAGAGGCCCGCCGCTGGTTGTCTCTCCGAAAGCTGTTTCCGATTCCAAGAACTCCCAGACGTGTCTTGATCCCGATGCGAGCCGGTGTGTTGGGGATTATCCTGGGTGGGGGAGCTGGGACGAGGCTTTACCCATTGACCAAGAAGCGTGGGAAGCCTGCTGTTCCATTGGGAGCAAACTACAGGCTGATCGATATCCCAGTCAGTAATTGCCTCAACAGAAACGTGTCCAAGATCTATGTGCTGACCCAGTTCAATTCCGCTTCGCACAATCGCCATCTTTCTCGTGCTTATGCCAGTAACATGGGTGGCTACAAAAATGAAGGCTTTGTTGAGGTTCTTGCTGCTCAGCAGAGCCCCGAGAATCCCAATTGGTTTCAGGGTACCGCGGATGCCGTGAGACAGTACTTGTGGTTGTTTGAGGAGCACAATGTATTGGAATTTTTAGTTCTTGCTGGGGATCACTTGTATAGGATGGACTATGAGAGGTTTATTCAGGCGCACAGAGAAACTGATGCAGACATCACTGTGGCTGCTCTGCCCATGGATGAGAAGCGCGCTACCGCCTTTGGTTTGATGAAGATTGATGAAGAGGGAAGGATTATTGAGTTTGCTGAGAAACCTAAAGGGGAGCAGCTCAAAGCTATGAAGGTTGATACTACTATCCTGGGTCTTGATGATGAGAGAGCAAAAGAGATGCCTTATATTGCCAGCATGGGTATATATGTTGTGAGCAAAAATGTGATGTTAGATCTACTTCGAGACAAGTTTCCTGGTGCAAATGATTTCGGGAGTGAAGTTATTCCAGGCGCAACTTCCATTGGTTTGAGAGTTCAAGCTTATTTGTATGATGGCTACTGGGAAGATATTGGTACCATTGAGGCTTTCAGCTTTCTACAACGCAAACTTGGGGATAACAAAAAAACCAGTTCCAGATTTCAGGGATATTTTAATCTAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

378

Amino Acids

41.92

Weight (kDa)

9.43

Isoelectric Point (pI)

40.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 89 - 358 5.2e-62 Nucleotidyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48300
fragaria_vesca FvH4_6g40220
malus_domestica MD09G1133900.v1.1 MD17G1122400.v1.1 MD17G1122900.v1.1
prunus_persica Prupe.3G192600_v2.0.a1
pyrus_communis pycom09g05520 pycom17g11260 pycom17g11350 pycom17g11450
rosa_chinensis RchiOBHm_Chr2g0155241
rosa_laevigata RLG00000020829
rosa_multiflora Rmu_sc0012066.1_g000006
rosa_roxburghii Rroxscaffold_2G00093840
rosa_rugosa Rorug02G0446300
rosa_samantha Rh2AG512700 Rh2BG523300 Rh2CG497700 Rh2DG533000
rosa_wichuraiana Rw2G042120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 554, 1043
AccB1I GGYRCC 2 cut(s) 554, 1043
AccBSI CCGCTC 1 cut(s) 27
AccII CGCG 3 cut(s) 43, 560, 729
AclWI GGATC 2 cut(s) 235, 639
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 153, 556, 578, 1045
AfiI CCNNNNNNNGG 3 cut(s) 155, 186, 280
AflIII ACRYGT 2 cut(s) 232, 396
AgsI TTSAA 3 cut(s) 15, 427, 1007
AjiI CACGTC 2 cut(s) 39, 233
AjnI CCWGG 4 cut(s) 273, 837, 943, 976
AluBI AGCT 6 cut(s) 205, 287, 808, 815, 1010, 1062
AluI AGCT 6 cut(s) 205, 287, 808, 815, 1010, 1062
Alw21I GWGCWC 2 cut(s) 36, 600
Alw26I GTCTC 3 cut(s) 198, 565, 927
AlwI GGATC 2 cut(s) 235, 639
AlwNI CAGNNNCTG 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 4 cut(s) 20, 515, 704, 805
ApoI RAATTY 1 cut(s) 611
Asp700I GAANNNNTTC 1 cut(s) 972
Asp718I GGTACC 2 cut(s) 554, 1043
AspLEI GCGC 4 cut(s) 673, 729, 731, 983
AspS9I GGNCC 2 cut(s) 120, 178
AsuC2I CCSGG 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 530
AvaII GGWCC 1 cut(s) 120
BanI GGYRCC 2 cut(s) 554, 1043
BanII GRGCYC 1 cut(s) 530
BauI CACGAG 1 cut(s) 456
Bbv12I GWGCWC 2 cut(s) 36, 600
BbvI GCAGC 4 cut(s) 32, 502, 691, 817
BccI CCATC 3 cut(s) 456, 640, 1016
BceAI ACGGC 1 cut(s) 551
BcgI CGANNNNNNTGC 2 cut(s) 13, 47
BciT130I CCWGG 4 cut(s) 275, 839, 945, 978
BcnI CCSGG 1 cut(s) 118
BcoDI GTCTC 3 cut(s) 198, 565, 927
BfaI CTAG 1 cut(s) 1127
BfmI CTRYAG 1 cut(s) 352
BglII AGATCT 2 cut(s) 405, 922
BisI GCNGC 7 cut(s) 21, 88, 103, 184, 516, 705, 806
BlpI GCTNAGC 1 cut(s) 519
BlsI GCNGC 7 cut(s) 22, 89, 104, 185, 517, 706, 807
BmcAI AGTACT 1 cut(s) 578
Bme1390I CCNGG 5 cut(s) 118, 275, 839, 945, 978
Bme18I GGWCC 1 cut(s) 120
BmeT110I CYCGRG 1 cut(s) 530
BmgBI CACGTC 2 cut(s) 39, 233
BmgT120I GGNCC 2 cut(s) 120, 178
BmiI GGNNCC 3 cut(s) 121, 556, 1045
BmrFI CCNGG 5 cut(s) 118, 275, 839, 945, 978
BmrI ACTGGG 3 cut(s) 365, 415, 1039
BmsI GCATC 4 cut(s) 237, 553, 676, 858
BmuI ACTGGG 3 cut(s) 365, 415, 1039
Bpu1102I GCTNAGC 1 cut(s) 519
BpuMI CCSGG 1 cut(s) 118
Bsa29I ATCGAT 1 cut(s) 363
BsaBI GATNNNNATC 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 4 cut(s) 274, 558, 714, 838
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 186, 280
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 5 cut(s) 371, 421, 468, 1034, 1098
Bse8I GATNNNNATC 1 cut(s) 365
BseBI CCWGG 4 cut(s) 275, 839, 945, 978
BseCI ATCGAT 1 cut(s) 363
BseDI CCNNGG 4 cut(s) 274, 558, 714, 838
BseGI GGATG 3 cut(s) 568, 651, 724
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 3 cut(s) 155, 186, 280
BseMII CTCAG 2 cut(s) 533, 777
BseNI ACTGG 5 cut(s) 371, 421, 468, 1034, 1098
BsePI GCGCGC 1 cut(s) 727
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 4 cut(s) 32, 502, 691, 817
BseYI CCCAGC 3 cut(s) 142, 287, 626
Bsh1236I CGCG 3 cut(s) 43, 560, 729
Bsh1285I CGRYCG 1 cut(s) 47
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 2 cut(s) 554, 1043
BshVI ATCGAT 1 cut(s) 363
BsiEI CGRYCG 1 cut(s) 47
BsiHKAI GWGCWC 2 cut(s) 36, 600
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 2 cut(s) 117, 255
BslFI GGGAC 2 cut(s) 133, 304
BslI CCNNNNNNNGG 3 cut(s) 155, 186, 280
BsmAI GTCTC 3 cut(s) 198, 565, 927
BsmFI GGGAC 2 cut(s) 133, 304
BsnI GGCC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 530
Bsp1286I GDGCHC 3 cut(s) 36, 530, 600
Bsp143I GATC 6 cut(s) 44, 240, 360, 405, 631, 922
Bsp1720I GCTNAGC 1 cut(s) 519
Bsp19I CCATGG 1 cut(s) 714
Bsp68I TCGCGA 1 cut(s) 43
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 2 cut(s) 532, 778
BspDI ATCGAT 1 cut(s) 363
BspFNI CGCG 3 cut(s) 43, 560, 729
BspLI GGNNCC 3 cut(s) 121, 556, 1045
BspPI GGATC 2 cut(s) 235, 639
BspT107I GGYRCC 2 cut(s) 554, 1043
BsrBI CCGCTC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 5 cut(s) 371, 421, 468, 1034, 1098
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 4 cut(s) 274, 558, 714, 838
BssHII GCGCGC 1 cut(s) 727
BssMI GATC 6 cut(s) 44, 240, 360, 405, 631, 922
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 456
BssT1I CCWWGG 1 cut(s) 714
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 4 cut(s) 275, 839, 945, 978
Bst4CI ACNGT 2 cut(s) 576, 700
Bst6I CTCTTC 2 cut(s) 16, 756
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 6 cut(s) 25, 181, 252, 330, 729, 883
BstDEI CTNAG 2 cut(s) 519, 786
BstDSI CCRYGG 2 cut(s) 558, 714
BstENI CCTNNNNNAGG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 568, 651, 724
BstFNI CGCG 3 cut(s) 43, 560, 729
BstHHI GCGC 4 cut(s) 673, 729, 731, 983
BstKTI GATC 6 cut(s) 47, 243, 363, 408, 634, 925
BstMAI GTCTC 3 cut(s) 198, 565, 927
BstMBI GATC 6 cut(s) 44, 240, 360, 405, 631, 922
BstMCI CGRYCG 1 cut(s) 47
BstMWI GCNNNNNNNGC 2 cut(s) 40, 325
BstNI CCWGG 4 cut(s) 275, 839, 945, 978
BstSCI CCNGG 5 cut(s) 116, 273, 837, 943, 976
BstSFI CTRYAG 1 cut(s) 352
BstUI CGCG 3 cut(s) 43, 560, 729
BstV1I GCAGC 4 cut(s) 32, 502, 691, 817
BstX2I RGATCY 2 cut(s) 405, 922
BstXI CCANNNNNNTGG 1 cut(s) 475
BstYI RGATCY 2 cut(s) 405, 922
Bsu15I ATCGAT 1 cut(s) 363
BsuRI GGCC 1 cut(s) 179
BsuTUI ATCGAT 1 cut(s) 363
BtgI CCRYGG 2 cut(s) 558, 714
BtrI CACGTC 2 cut(s) 39, 233
BtsCI GGATG 3 cut(s) 568, 651, 724
BtsIMutI CAGTG 1 cut(s) 696
BtuMI TCGCGA 1 cut(s) 43
Cac8I GCNNGC 6 cut(s) 25, 181, 252, 330, 729, 883
CaiI CAGNNNCTG 1 cut(s) 149
CfoI GCGC 4 cut(s) 673, 729, 731, 983
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 2 cut(s) 120, 178
Cfr42I CCGCGG 1 cut(s) 561
ClaI ATCGAT 1 cut(s) 363
Csp6I GTAC 4 cut(s) 152, 555, 577, 1044
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 3 cut(s) 475, 715, 886
CviQI GTAC 4 cut(s) 152, 555, 577, 1044
DdeI CTNAG 2 cut(s) 519, 786
DpnI GATC 6 cut(s) 46, 242, 362, 407, 633, 924
DpnII GATC 6 cut(s) 44, 240, 360, 405, 631, 922
Eam1104I CTCTTC 2 cut(s) 16, 756
EarI CTCTTC 2 cut(s) 16, 756
Eco130I CCWWGG 1 cut(s) 714
Eco24I GRGCYC 1 cut(s) 530
Eco32I GATATC 1 cut(s) 367
Eco47I GGWCC 1 cut(s) 120
Eco57I CTGAAG 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 530
EcoNI CCTNNNNNAGG 1 cut(s) 153
EcoRII CCWGG 4 cut(s) 273, 837, 943, 976
EcoRV GATATC 1 cut(s) 367
EcoT14I CCWWGG 1 cut(s) 714
EcoT38I GRGCYC 1 cut(s) 530
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 3 cut(s) 478, 718, 889
FaqI GGGAC 2 cut(s) 133, 304
FatI CATG 3 cut(s) 474, 714, 885
FauI CCCGC 2 cut(s) 144, 188
Fnu4HI GCNGC 7 cut(s) 21, 88, 103, 184, 516, 705, 806
FokI GGATG 3 cut(s) 575, 658, 731
FriOI GRGCYC 1 cut(s) 530
Fsp4HI GCNGC 7 cut(s) 21, 88, 103, 184, 516, 705, 806
FspBI CTAG 1 cut(s) 1127
GlaI GCGC 4 cut(s) 672, 728, 730, 982
GluI GCNGC 7 cut(s) 21, 88, 103, 184, 516, 705, 806
GsaI CCCAGC 3 cut(s) 146, 291, 630
HaeIII GGCC 1 cut(s) 179
HapII CCGG 2 cut(s) 117, 255
HhaI GCGC 4 cut(s) 673, 729, 731, 983
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 478, 718, 889
Hin6I GCGC 4 cut(s) 671, 727, 729, 981
HinP1I GCGC 4 cut(s) 671, 727, 729, 981
HindIII AAGCTT 1 cut(s) 1008
HinfI GANTC 2 cut(s) 214, 535
HpaII CCGG 2 cut(s) 117, 255
Hpy188I TCNGA 2 cut(s) 200, 213
Hpy188III TCNNGA 8 cut(s) 42, 238, 244, 845, 932, 961, 1104, 1127
Hpy99I CGWCG 2 cut(s) 43, 52
HpyAV CCTTC 4 cut(s) 106, 488, 762, 814
HpyCH4III ACNGT 2 cut(s) 576, 700
HpyCH4IV ACGT 3 cut(s) 38, 232, 396
HpyCH4V TGCA 2 cut(s) 689, 950
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 325
HpyF3I CTNAG 2 cut(s) 519, 786
HpySE526I ACGT 3 cut(s) 38, 232, 396
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 478, 718, 889
HspAI GCGC 4 cut(s) 671, 727, 729, 981
KpnI GGTACC 2 cut(s) 558, 1047
KspI CCGCGG 1 cut(s) 561
Kzo9I GATC 6 cut(s) 44, 240, 360, 405, 631, 922
LmnI GCTCC 4 cut(s) 284, 344, 595, 802
Lsp1109I GCAGC 4 cut(s) 32, 502, 691, 817
LweI GCATC 4 cut(s) 237, 553, 676, 858
MaeI CTAG 1 cut(s) 1127
MaeII ACGT 3 cut(s) 38, 232, 396
MaeIII GTNAC 1 cut(s) 470
MalI GATC 6 cut(s) 46, 242, 362, 407, 633, 924
MbiI CCGCTC 1 cut(s) 27
MboI GATC 6 cut(s) 44, 240, 360, 405, 631, 922
MboII GAAGA 4 cut(s) 3, 763, 773, 1046
MfeI CAATTG 1 cut(s) 541
MflI RGATCY 2 cut(s) 405, 922
MhlI GDGCHC 3 cut(s) 36, 530, 600
MluCI AATT 4 cut(s) 379, 427, 541, 611
MroXI GAANNNNTTC 1 cut(s) 972
MseI TTAA 1 cut(s) 1122
MslI CAYNNNNRTG 1 cut(s) 698
MspA1I CMGCKG 3 cut(s) 102, 186, 560
MspI CCGG 2 cut(s) 117, 255
MspR9I CCNGG 5 cut(s) 118, 275, 839, 945, 978
MunI CAATTG 1 cut(s) 541
MvaI CCWGG 4 cut(s) 275, 839, 945, 978
MvnI CGCG 3 cut(s) 43, 560, 729
MwoI GCNNNNNNNGC 2 cut(s) 40, 325
NciI CCSGG 1 cut(s) 118
NcoI CCATGG 1 cut(s) 714
NdeII GATC 6 cut(s) 44, 240, 360, 405, 631, 922
NlaIII CATG 3 cut(s) 478, 718, 889
NlaIV GGNNCC 3 cut(s) 121, 556, 1045
NruI TCGCGA 1 cut(s) 43
PauI GCGCGC 1 cut(s) 727
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 56
PdmI GAANNNNTTC 1 cut(s) 972
PfeI GAWTC 2 cut(s) 214, 535
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 7 cut(s) 22, 89, 104, 185, 517, 706, 807
Ple19I CGATCG 1 cut(s) 47
Psp6I CCWGG 4 cut(s) 273, 837, 943, 976
PspFI CCCAGC 3 cut(s) 142, 287, 626
PspGI CCWGG 4 cut(s) 273, 837, 943, 976
PspN4I GGNNCC 3 cut(s) 121, 556, 1045
PspPI GGNCC 2 cut(s) 120, 178
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 2 cut(s) 405, 922
PteI GCGCGC 1 cut(s) 727
PvuI CGATCG 1 cut(s) 47
RruI TCGCGA 1 cut(s) 43
RsaI GTAC 4 cut(s) 153, 556, 578, 1045
RsaNI GTAC 4 cut(s) 152, 555, 577, 1044
RseI CAYNNNNRTG 1 cut(s) 698
SacII CCGCGG 1 cut(s) 561
SaqAI TTAA 1 cut(s) 1122
SatI GCNGC 7 cut(s) 21, 88, 103, 184, 516, 705, 806
Sau3AI GATC 6 cut(s) 44, 240, 360, 405, 631, 922
Sau96I GGNCC 2 cut(s) 120, 178
ScaI AGTACT 1 cut(s) 578
ScrFI CCNGG 5 cut(s) 118, 275, 839, 945, 978
SduI GDGCHC 3 cut(s) 36, 530, 600
SfaNI GCATC 4 cut(s) 237, 553, 676, 858
SfcI CTRYAG 1 cut(s) 352
Sfr303I CCGCGG 1 cut(s) 561
SgrBI CCGCGG 1 cut(s) 561
SinI GGWCC 1 cut(s) 120
SmiMI CAYNNNNRTG 1 cut(s) 698
Sse9I AATT 4 cut(s) 379, 427, 541, 611
SspMI CTAG 1 cut(s) 1127
StyD4I CCNGG 5 cut(s) 116, 273, 837, 943, 976
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 2 cut(s) 576, 700
TaiI ACGT 3 cut(s) 41, 235, 399
TaqI TCGA 3 cut(s) 65, 363, 931
TasI AATT 4 cut(s) 379, 427, 541, 611
TatI WGTACW 1 cut(s) 576
TauI GCSGC 3 cut(s) 90, 105, 186
TfiI GAWTC 2 cut(s) 214, 535
Tru1I TTAA 1 cut(s) 1122
Tru9I TTAA 1 cut(s) 1122
TscAI CASTG 1 cut(s) 703
TseI GCWGC 4 cut(s) 20, 515, 704, 805
TspDTI ATGAA 4 cut(s) 507, 764, 774, 833
TspRI CASTG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 153
XapI RAATTY 1 cut(s) 611
XbaI TCTAGA 1 cut(s) 1126
XmnI GAANNNNTTC 1 cut(s) 972
XspI CTAG 1 cut(s) 1127
ZrmI AGTACT 1 cut(s) 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.