Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0011236

Physical Location & Seq

Genomic Coordinates Reverse (-)

76284951 .. 76288541

Gene Structure 3591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG533000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGAGGGTACAAAAATGAAGGCTTTGTCGAAGTGCTTGCGGCGCAGCAGAGTCCCGAGAATCCCAATTGGTTTCAGGGTACTGCGGATGCTGTGAGGCAGTATCTGTGGTTGTTTGAAGAACACAATGTGTTGGAGTTTTTGGTTCTTGCCGGGGACCATTTGTATCGGATGGACTATGAGAGGTTCATTCAGGCTCATAGAGAAACTGATGCAGATATCACTGTGGCTGCTCTGCCCATGGATGAGAAGCGTGCTACTGCCTTCGGTTTGATGAAGATTGATGACGAGGGTCGCATTATTGAGTTTGCTGAGAAGCCTAAAGGGGAGCAACTCAAAGCTATGAAGGTAGATACAACCATATTGGGTCTTGATGATGAGAGAGCTAAAGAGATGCCTTACATCGCCAGTATGGGTATATATGTTGTGAGCAAAAATGTGATGTTAGATCTGCTTCGAGAGAAGTTTCCTGGAGCAAATGATTTTGGGAGTGAAGTCATTCCTGGTGCTACTTCCATTGGGTTGAGGGTTCAAGCTTATCTGTATGATGGCTACTGGGAAGACATTGGTACCATTGAGGCTTTCTATAATGCTAATCTGGGTATAACTAAAAAGCCAATTCCAGATTTCAGCTTCTACGATCGTTCATCCCCGATCTACACCCAACCTCGGTATTTGCCCCCATCCAAAATGCTTGATGCTGATGTCACAGATAGTGTTATTGGCGAAGGTTGTGTGATAAAGAACTGTAAAATTCACCATTCTGTCGTTGGGCTTCGTTCTTGCATATCAGAAGGTGCTGTTATTGAAGACACATTACTGATGGGGGCAGACTACTATGAGACGGATGCTGACAGGAGGTATCTGGCTGGAAGAGGCGGTGTTCCAATTGGTATCGGAAAGAATTCTCACATTAAGAGAGCTATAATTGACAAGAATGCTCGAATTGGGGACAATGTGAAGATTGTCAACAGTGACAGTGTGCAAGAAGCTGCAAGAGAAACAGATGGATATTTCATCAAAAGCGGGATTGTCACAGTGATCAAGGATGCCTTGATTCCTAGTGGAACCGTAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008878 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0016051 GO:0016740 GO:0016772 GO:0016779 GO:0019252 GO:0022414 GO:0030929 GO:0030931 GO:0032501 GO:0032502 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070566 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

359

Amino Acids

39.88

Weight (kDa)

4.94

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	10 - 204	5.6e-40	Nucleotidyl transferase
LbH_GLGC	PF25247	224 - 358	4.7e-54	GLGC left-handed parallel beta-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48300
fragaria_vesca	FvH4_6g40220
malus_domestica	MD09G1133900.v1.1 MD17G1122400.v1.1 MD17G1122900.v1.1
prunus_persica	Prupe.3G192600_v2.0.a1
pyrus_communis	pycom09g05520 pycom17g11260 pycom17g11350 pycom17g11450
rosa_chinensis	RchiOBHm_Chr2g0155241
rosa_laevigata	RLG00000020829
rosa_multiflora	Rmu_sc0012066.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093840
rosa_rugosa	Rorug02G0446300
rosa_samantha	Rh2AG512700 Rh2BG523300 Rh2CG497700 Rh2DG533000
rosa_wichuraiana	Rw2G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	569
AccB1I	GGYRCC	1 cut(s)	569
AciI	CCGC	4 cut(s)	41, 86, 879, 1026
AcsI	RAATTY	2 cut(s)	753, 904
AdeI	CACNNNGTG	1 cut(s)	130
AfaI	GTAC	3 cut(s)	11, 82, 571
AfiI	CCNNNNNNNGG	1 cut(s)	669
AgsI	TTSAA	3 cut(s)	119, 533, 809
AjnI	CCWGG	2 cut(s)	469, 502
AluBI	AGCT	6 cut(s)	341, 386, 536, 633, 923, 992
AluI	AGCT	6 cut(s)	341, 386, 536, 633, 923, 992
Alw26I	GTCTC	1 cut(s)	836
AlwNI	CAGNNNCTG	1 cut(s)	106
Ama87I	CYCGRG	1 cut(s)	56
ApeKI	GCWGC	3 cut(s)	46, 230, 992
ApoI	RAATTY	2 cut(s)	753, 904
Asp700I	GAANNNNTTC	2 cut(s)	498, 904
Asp718I	GGTACC	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	749
AvaI	CYCGRG	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	157
BaeI	ACNNNNGTAYC	2 cut(s)	553, 586
BanI	GGYRCC	1 cut(s)	569
BarI	GAAGNNNNNNTAC	2 cut(s)	801, 833
BbsI	GAAGAC	2 cut(s)	567, 816
BbvI	GCAGC	3 cut(s)	58, 217, 979
BccI	CCATC	5 cut(s)	166, 542, 691, 817, 1001
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	2 cut(s)	471, 504
BclI	TGATCA	1 cut(s)	1041
BcnI	CCSGG	1 cut(s)	154
BcoDI	GTCTC	1 cut(s)	836
BfaI	CTAG	1 cut(s)	1062
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	4 cut(s)	42, 47, 231, 993
BlsI	GCNGC	4 cut(s)	43, 48, 232, 994
Bme1390I	CCNGG	3 cut(s)	154, 471, 504
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	3 cut(s)	158, 571, 1069
BmrFI	CCNGG	3 cut(s)	154, 471, 504
BmrI	ACTGGG	1 cut(s)	565
BmsI	GCATC	6 cut(s)	79, 202, 384, 688, 838, 1039
BmuI	ACTGGG	1 cut(s)	565
BoxI	GACNNNNGTC	1 cut(s)	291
BpiI	GAAGAC	2 cut(s)	567, 816
BpmI	CTGGAG	1 cut(s)	492
BpuMI	CCSGG	1 cut(s)	154
BsaJI	CCNNGG	3 cut(s)	153, 240, 668
Bsc4I	CCNNNNNNNGG	1 cut(s)	669
Bse1I	ACTGG	2 cut(s)	408, 560
BseBI	CCWGG	2 cut(s)	471, 504
BseDI	CCNNGG	3 cut(s)	153, 240, 668
BseGI	GGATG	7 cut(s)	94, 177, 250, 647, 683, 853, 1054
BseLI	CCNNNNNNNGG	1 cut(s)	669
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	408, 560
BseXI	GCAGC	3 cut(s)	58, 217, 979
Bsh1285I	CGRYCG	1 cut(s)	643
BshNI	GGYRCC	1 cut(s)	569
BsiEI	CGRYCG	1 cut(s)	643
BsiHKCI	CYCGRG	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	3 cut(s)	39, 170, 965
BslI	CCNNNNNNNGG	1 cut(s)	669
BsmAI	GTCTC	1 cut(s)	836
BsmBI	CGTCTC	1 cut(s)	836
BsmFI	GGGAC	3 cut(s)	39, 170, 965
BsmI	GAATGC	1 cut(s)	943
BsoBI	CYCGRG	1 cut(s)	56
Bsp143I	GATC	4 cut(s)	448, 640, 654, 1041
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	4 cut(s)	41, 86, 879, 1026
BspCNI	CTCAG	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	158, 571, 1069
BspT107I	GGYRCC	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	408, 560
BssECI	CCNNGG	3 cut(s)	153, 240, 668
BssMI	GATC	4 cut(s)	448, 640, 654, 1041
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	471, 504
Bst4CI	ACNGT	6 cut(s)	226, 749, 974, 980, 1039, 1072
Bst6I	CTCTTC	1 cut(s)	868
BstC8I	GCNNGC	2 cut(s)	39, 255
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	240
BstF5I	GGATG	7 cut(s)	94, 177, 250, 647, 683, 853, 1054
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	4 cut(s)	451, 643, 657, 1044
BstMAI	GTCTC	1 cut(s)	836
BstMBI	GATC	4 cut(s)	448, 640, 654, 1041
BstMCI	CGRYCG	1 cut(s)	643
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNI	CCWGG	2 cut(s)	471, 504
BstPAI	GACNNNNGTC	1 cut(s)	291
BstSCI	CCNGG	3 cut(s)	152, 469, 502
BstV1I	GCAGC	3 cut(s)	58, 217, 979
BstV2I	GAAGAC	2 cut(s)	567, 816
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BtgI	CCRYGG	1 cut(s)	240
BtgZI	GCGATG	1 cut(s)	388
BtsCI	GGATG	7 cut(s)	94, 177, 250, 647, 683, 853, 1054
BtsIMutI	CAGTG	4 cut(s)	222, 979, 985, 1044
Cac8I	GCNNGC	2 cut(s)	39, 255
CaiI	CAGNNNCTG	1 cut(s)	106
CfoI	GCGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	3 cut(s)	10, 81, 570
CviAII	CATG	1 cut(s)	241
CviQI	GTAC	3 cut(s)	10, 81, 570
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	4 cut(s)	450, 642, 656, 1043
DpnII	GATC	4 cut(s)	448, 640, 654, 1041
DraIII	CACNNNGTG	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	868
EarI	CTCTTC	1 cut(s)	868
Eco130I	CCWWGG	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	904
EcoRII	CCWGG	2 cut(s)	469, 502
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	836
FaeI	CATG	1 cut(s)	244
FalI	AAGNNNNNCTT	2 cut(s)	1037, 1069
FaqI	GGGAC	3 cut(s)	39, 170, 965
FatI	CATG	1 cut(s)	240
FauI	CCCGC	1 cut(s)	1019
FbaI	TGATCA	1 cut(s)	1041
Fnu4HI	GCNGC	4 cut(s)	42, 47, 231, 993
FokI	GGATG	7 cut(s)	101, 184, 257, 634, 670, 860, 1061
Fsp4HI	GCNGC	4 cut(s)	42, 47, 231, 993
FspBI	CTAG	1 cut(s)	1062
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	4 cut(s)	42, 47, 231, 993
GsuI	CTGGAG	1 cut(s)	492
HapII	CCGG	1 cut(s)	153
HhaI	GCGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	1 cut(s)	534
HinfI	GANTC	3 cut(s)	52, 61, 1057
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	1 cut(s)	970
Hpy188I	TCNGA	3 cut(s)	171, 793, 899
Hpy188III	TCNNGA	4 cut(s)	56, 371, 458, 623
Hpy8I	GTNNAC	1 cut(s)	970
HpyAV	CCTTC	5 cut(s)	14, 274, 340, 722, 788
HpyCH4III	ACNGT	6 cut(s)	226, 749, 974, 980, 1039, 1072
HpyCH4V	TGCA	4 cut(s)	215, 786, 985, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	1 cut(s)	44
KpnI	GGTACC	1 cut(s)	573
Ksp22I	TGATCA	1 cut(s)	1041
Kzo9I	GATC	4 cut(s)	448, 640, 654, 1041
LmnI	GCTCC	2 cut(s)	328, 473
Lsp1109I	GCAGC	3 cut(s)	58, 217, 979
LweI	GCATC	6 cut(s)	79, 202, 384, 688, 838, 1039
MaeI	CTAG	1 cut(s)	1062
MaeIII	GTNAC	3 cut(s)	706, 974, 1033
MalI	GATC	4 cut(s)	450, 642, 656, 1043
MboI	GATC	4 cut(s)	448, 640, 654, 1041
MboII	GAAGA	6 cut(s)	131, 289, 572, 821, 885, 973
MfeI	CAATTG	2 cut(s)	67, 888
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	7 cut(s)	67, 618, 753, 888, 904, 927, 945
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	8 cut(s)	90, 177, 283, 519, 571, 678, 852, 869
MroXI	GAANNNNTTC	2 cut(s)	498, 904
MseI	TTAA	1 cut(s)	915
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	3 cut(s)	154, 471, 504
MunI	CAATTG	2 cut(s)	67, 888
Mva1269I	GAATGC	1 cut(s)	943
MvaI	CCWGG	2 cut(s)	471, 504
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	154
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	448, 640, 654, 1041
NlaIII	CATG	1 cut(s)	244
NlaIV	GGNNCC	3 cut(s)	158, 571, 1069
NmuCI	GTSAC	3 cut(s)	706, 974, 1033
PctI	GAATGC	1 cut(s)	943
PdmI	GAANNNNTTC	2 cut(s)	498, 904
PfeI	GAWTC	2 cut(s)	61, 1057
PfoI	TCCNGGA	1 cut(s)	469
PkrI	GCNGC	4 cut(s)	43, 48, 232, 994
Ple19I	CGATCG	1 cut(s)	643
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PshAI	GACNNNNGTC	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	469, 502
PspGI	CCWGG	2 cut(s)	469, 502
PspN4I	GGNNCC	3 cut(s)	158, 571, 1069
PspPI	GGNCC	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	448
PvuI	CGATCG	1 cut(s)	643
RsaI	GTAC	3 cut(s)	11, 82, 571
RsaNI	GTAC	3 cut(s)	10, 81, 570
SaqAI	TTAA	1 cut(s)	915
SatI	GCNGC	4 cut(s)	42, 47, 231, 993
Sau3AI	GATC	4 cut(s)	448, 640, 654, 1041
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	3 cut(s)	154, 471, 504
SfaNI	GCATC	6 cut(s)	79, 202, 384, 688, 838, 1039
SinI	GGWCC	1 cut(s)	157
Sse9I	AATT	7 cut(s)	67, 618, 753, 888, 904, 927, 945
SsiI	CCGC	4 cut(s)	41, 86, 879, 1026
SspMI	CTAG	1 cut(s)	1062
StyD4I	CCNGG	3 cut(s)	152, 469, 502
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	6 cut(s)	226, 749, 974, 980, 1039, 1072
TaqI	TCGA	3 cut(s)	30, 457, 943
TasI	AATT	7 cut(s)	67, 618, 753, 888, 904, 927, 945
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	61, 1057
Tru1I	TTAA	1 cut(s)	915
Tru9I	TTAA	1 cut(s)	915
TscAI	CASTG	4 cut(s)	229, 979, 985, 1044
TseFI	GTSAC	3 cut(s)	706, 974, 1033
TseI	GCWGC	3 cut(s)	46, 230, 992
Tsp45I	GTSAC	3 cut(s)	706, 974, 1033
TspDTI	ATGAA	6 cut(s)	33, 178, 290, 359, 636, 1006
TspGWI	ACGGA	1 cut(s)	860
TspRI	CASTG	4 cut(s)	229, 979, 985, 1044
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	753, 904
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XmnI	GAANNNNTTC	2 cut(s)	498, 904
XspI	CTAG	1 cut(s)	1062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.