Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0011236

Physical Location & Seq

Genomic Coordinates Forward (+)

4109031 .. 4111474

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g05520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGGTGGCTACAAAAATGAAGGCTTTGTTGAGGTTCTTGCTGCCCAGCAGAGCCCAGAGAATCCCAATTGGTTTCAGGGCACCGCGGATGCCGTGAGGCAGTATTTGTGGTTGTTTGAGGAGCACAATGTGTTGGAGTTTTTGGTTCTTGCTGGGGACCACTTGTATAGGATGGACTATGAAAGGTTTATTCAGGCACATAGAGAAACTGATGCAGACATCACTGTGGCTGCTCTGCCCATGGATGAGAAGCGTGCTACCGCCTTTGGTTTGATGAAGATTGATGAAGAGGGAAGGATTATTGAGTATGCTGAGAAACCCAAAGGGGAGCAACTCAAAGCTATGAAGGTTGATACTACTATCTTGGGTCTTGATGATGAGAGAGCTAAAGAGATGCCTTATATTGCCAGTATGGGTATATATGTTGTGAGCAAAAATGTCATGGATCTACTTCGAGACAAGTTTCCTGGTGCAAATGATTTCGGGAGTGAAGTTATTCCAGGTGCAACTTCCATTGGTTTGAGGGTTCAAGCTTATCTGTATGATGGCTATTGGGAAGATATTGGTACCATTGAAGCTTTCTACAATGCAAACTTGGGGATAACAAAAAAACCAGTTCCAGATTTCAGCTTTTATGATCGTTCATCCCCAATCTACACCCAACCTCGGTATTTACCCCCATCAAAAATGCTTGATGCTGATGTCACAGATAGTGTTATTGGCGAGGGATGTGTAATAAAGAACTGTAAAATTCACCATTCAGTCGTTGGGCTTCGGTCTTGCATAGCGGAGGGTGCTGTCATTGAAGACACATTACTGATGGGAGCTGACTACTATGAGACTGATGCTGACAGGAGGTTTCTAGCTGCAAAGGGTAGCGTTCCAATCGGTATTGGCAAGAATTCTCACATTAGGAGAGCTATAATTGATAAGAATGCTCGAATTGGAGAAAATGTTAAGATTATCAATATCGACAATGTGCAAGAAGCAGCAAGGGAAACAGATGGATATTTCATAAAGAGCGCGATTGTCACAGTGATCAAGGATGCCTTGATTCCTAGTGGAACGGTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

359

Amino Acids

39.88

Weight (kDa)

4.94

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	10 - 203	3.7e-38	Nucleotidyl transferase
LbH_GLGC	PF25247	223 - 357	1.4e-53	GLGC left-handed parallel beta-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011236)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48300
fragaria_vesca	FvH4_6g40220
malus_domestica	MD09G1133900.v1.1 MD17G1122400.v1.1 MD17G1122900.v1.1
prunus_persica	Prupe.3G192600_v2.0.a1
pyrus_communis	pycom09g05520 pycom17g11260 pycom17g11350 pycom17g11450
rosa_chinensis	RchiOBHm_Chr2g0155241
rosa_laevigata	RLG00000020829
rosa_multiflora	Rmu_sc0012066.1_g000006
rosa_roxburghii	Rroxscaffold_2G00093840
rosa_rugosa	Rorug02G0446300
rosa_samantha	Rh2AG512700 Rh2BG523300 Rh2CG497700 Rh2DG533000
rosa_wichuraiana	Rw2G042120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	566
AccB1I	GGYRCC	2 cut(s)	80, 566
AccII	CGCG	2 cut(s)	86, 1025
AciI	CCGC	4 cut(s)	84, 86, 261, 788
AclWI	GGATC	1 cut(s)	453
AcsI	RAATTY	2 cut(s)	750, 901
AdeI	CACNNNGTG	1 cut(s)	130
AfaI	GTAC	1 cut(s)	568
AfiI	CCNNNNNNNGG	1 cut(s)	666
AgsI	TTSAA	3 cut(s)	530, 575, 806
AjnI	CCWGG	2 cut(s)	466, 499
AluBI	AGCT	8 cut(s)	341, 386, 533, 578, 630, 827, 866, 920
AluI	AGCT	8 cut(s)	341, 386, 533, 578, 630, 827, 866, 920
Alw21I	GWGCWC	1 cut(s)	126
Alw26I	GTCTC	2 cut(s)	450, 833
AlwI	GGATC	1 cut(s)	453
ApeKI	GCWGC	4 cut(s)	41, 230, 866, 989
ApoI	RAATTY	2 cut(s)	750, 901
Asp700I	GAANNNNTTC	1 cut(s)	495
Asp718I	GGTACC	1 cut(s)	566
AspLEI	GCGC	1 cut(s)	1025
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	746
AvaII	GGWCC	1 cut(s)	157
BaeGI	GKGCMC	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	80, 566
BanII	GRGCYC	1 cut(s)	56
BarI	GAAGNNNNNNTAC	2 cut(s)	798, 830
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	4 cut(s)	28, 217, 853, 1001
BccI	CCATC	5 cut(s)	166, 539, 688, 814, 998
BceAI	ACGGC	1 cut(s)	77
BciT130I	CCWGG	2 cut(s)	468, 501
BclI	TGATCA	1 cut(s)	1038
BcoDI	GTCTC	2 cut(s)	450, 833
BfaI	CTAG	3 cut(s)	863, 1059, 1075
BisI	GCNGC	4 cut(s)	42, 231, 867, 990
BlsI	GCNGC	4 cut(s)	43, 232, 868, 991
Bme1390I	CCNGG	2 cut(s)	468, 501
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	3 cut(s)	82, 158, 568
BmrFI	CCNGG	2 cut(s)	468, 501
BmsI	GCATC	6 cut(s)	79, 202, 384, 685, 835, 1036
BpiI	GAAGAC	1 cut(s)	813
BsaJI	CCNNGG	3 cut(s)	84, 240, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	939, 969
Bsc4I	CCNNNNNNNGG	1 cut(s)	666
Bse1I	ACTGG	2 cut(s)	408, 614
BseBI	CCWGG	2 cut(s)	468, 501
BseDI	CCNNGG	3 cut(s)	84, 240, 665
BseGI	GGATG	6 cut(s)	94, 177, 250, 644, 734, 1051
BseLI	CCNNNNNNNGG	1 cut(s)	666
BseMII	CTCAG	1 cut(s)	303
BseNI	ACTGG	2 cut(s)	408, 614
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	4 cut(s)	28, 217, 853, 1001
BseYI	CCCAGC	2 cut(s)	45, 152
Bsh1236I	CGCG	2 cut(s)	86, 1025
BshNI	GGYRCC	2 cut(s)	80, 566
BsiHKAI	GWGCWC	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	666
BsmAI	GTCTC	2 cut(s)	450, 833
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	1 cut(s)	940
Bsp1286I	GDGCHC	3 cut(s)	56, 83, 126
Bsp143I	GATC	3 cut(s)	445, 637, 1038
Bsp19I	CCATGG	1 cut(s)	240
BspACI	CCGC	4 cut(s)	84, 86, 261, 788
BspCNI	CTCAG	1 cut(s)	304
BspFNI	CGCG	2 cut(s)	86, 1025
BspLI	GGNNCC	3 cut(s)	82, 158, 568
BspPI	GGATC	1 cut(s)	453
BspT107I	GGYRCC	2 cut(s)	80, 566
BsrI	ACTGG	2 cut(s)	408, 614
BssECI	CCNNGG	3 cut(s)	84, 240, 665
BssMI	GATC	3 cut(s)	445, 637, 1038
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	2 cut(s)	468, 501
Bst4CI	ACNGT	4 cut(s)	226, 746, 1036, 1069
Bst6I	CTCTTC	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	255
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	2 cut(s)	84, 240
BstF5I	GGATG	6 cut(s)	94, 177, 250, 644, 734, 1051
BstFNI	CGCG	2 cut(s)	86, 1025
BstHHI	GCGC	1 cut(s)	1025
BstKTI	GATC	3 cut(s)	448, 640, 1041
BstMAI	GTCTC	2 cut(s)	450, 833
BstMBI	GATC	3 cut(s)	445, 637, 1038
BstMWI	GCNNNNNNNGC	1 cut(s)	794
BstNI	CCWGG	2 cut(s)	468, 501
BstSCI	CCNGG	2 cut(s)	466, 499
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	2 cut(s)	86, 1025
BstV1I	GCAGC	4 cut(s)	28, 217, 853, 1001
BstV2I	GAAGAC	1 cut(s)	813
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
BtgI	CCRYGG	2 cut(s)	84, 240
BtsCI	GGATG	6 cut(s)	94, 177, 250, 644, 734, 1051
BtsIMutI	CAGTG	2 cut(s)	222, 1041
Cac8I	GCNNGC	1 cut(s)	255
CfoI	GCGC	1 cut(s)	1025
Cfr13I	GGNCC	1 cut(s)	157
Cfr42I	CCGCGG	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	567
CviAII	CATG	2 cut(s)	241, 442
CviQI	GTAC	1 cut(s)	567
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	3 cut(s)	447, 639, 1040
DpnII	GATC	3 cut(s)	445, 637, 1038
DraIII	CACNNNGTG	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	157
EcoRI	GAATTC	1 cut(s)	901
EcoRII	CCWGG	2 cut(s)	466, 499
EcoT14I	CCWWGG	1 cut(s)	240
EcoT38I	GRGCYC	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	2 cut(s)	244, 445
FalI	AAGNNNNNCTT	2 cut(s)	1034, 1066
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	240, 441
FbaI	TGATCA	1 cut(s)	1038
Fnu4HI	GCNGC	4 cut(s)	42, 231, 867, 990
FokI	GGATG	6 cut(s)	101, 184, 257, 631, 741, 1058
FriOI	GRGCYC	1 cut(s)	56
Fsp4HI	GCNGC	4 cut(s)	42, 231, 867, 990
FspBI	CTAG	3 cut(s)	863, 1059, 1075
GlaI	GCGC	1 cut(s)	1024
GluI	GCNGC	4 cut(s)	42, 231, 867, 990
GsaI	CCCAGC	2 cut(s)	49, 156
HhaI	GCGC	1 cut(s)	1025
Hin1II	CATG	2 cut(s)	244, 445
Hin6I	GCGC	1 cut(s)	1023
HinP1I	GCGC	1 cut(s)	1023
HindIII	AAGCTT	2 cut(s)	531, 576
HinfI	GANTC	2 cut(s)	61, 1054
HphI	GGTGA	1 cut(s)	746
Hpy188III	TCNNGA	4 cut(s)	371, 455, 484, 620
HpyAV	CCTTC	3 cut(s)	14, 288, 340
HpyCH4III	ACNGT	4 cut(s)	226, 746, 1036, 1069
HpyCH4V	TGCA	7 cut(s)	215, 473, 506, 590, 783, 869, 982
HpyF10VI	GCNNNNNNNGC	1 cut(s)	794
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	244, 445
HspAI	GCGC	1 cut(s)	1023
KpnI	GGTACC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	1038
KspI	CCGCGG	1 cut(s)	87
Kzo9I	GATC	3 cut(s)	445, 637, 1038
LmnI	GCTCC	3 cut(s)	121, 328, 824
Lsp1109I	GCAGC	4 cut(s)	28, 217, 853, 1001
LweI	GCATC	6 cut(s)	79, 202, 384, 685, 835, 1036
MaeI	CTAG	3 cut(s)	863, 1059, 1075
MaeIII	GTNAC	2 cut(s)	703, 1030
MalI	GATC	3 cut(s)	447, 639, 1040
MboI	GATC	3 cut(s)	445, 637, 1038
MboII	GAAGA	4 cut(s)	289, 299, 569, 818
MfeI	CAATTG	1 cut(s)	67
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	3 cut(s)	56, 83, 126
MluCI	AATT	5 cut(s)	67, 750, 901, 924, 942
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	9 cut(s)	25, 90, 112, 283, 516, 675, 718, 784, 849
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	1 cut(s)	957
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	1 cut(s)	86
MspR9I	CCNGG	2 cut(s)	468, 501
MunI	CAATTG	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	940
MvaI	CCWGG	2 cut(s)	468, 501
MvnI	CGCG	2 cut(s)	86, 1025
MwoI	GCNNNNNNNGC	1 cut(s)	794
NcoI	CCATGG	1 cut(s)	240
NdeII	GATC	3 cut(s)	445, 637, 1038
NlaIII	CATG	2 cut(s)	244, 445
NlaIV	GGNNCC	3 cut(s)	82, 158, 568
NmuCI	GTSAC	2 cut(s)	703, 1030
PctI	GAATGC	1 cut(s)	940
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	61, 1054
PkrI	GCNGC	4 cut(s)	43, 232, 868, 991
Psp6I	CCWGG	2 cut(s)	466, 499
PspFI	CCCAGC	2 cut(s)	45, 152
PspGI	CCWGG	2 cut(s)	466, 499
PspN4I	GGNNCC	3 cut(s)	82, 158, 568
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	445
RsaI	GTAC	1 cut(s)	568
RsaNI	GTAC	1 cut(s)	567
RseI	CAYNNNNRTG	1 cut(s)	224
SacII	CCGCGG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	957
SatI	GCNGC	4 cut(s)	42, 231, 867, 990
Sau3AI	GATC	3 cut(s)	445, 637, 1038
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	468, 501
SduI	GDGCHC	3 cut(s)	56, 83, 126
SfaNI	GCATC	6 cut(s)	79, 202, 384, 685, 835, 1036
Sfr303I	CCGCGG	1 cut(s)	87
SgrBI	CCGCGG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	5 cut(s)	67, 750, 901, 924, 942
SsiI	CCGC	4 cut(s)	84, 86, 261, 788
SspMI	CTAG	3 cut(s)	863, 1059, 1075
StyD4I	CCNGG	2 cut(s)	466, 499
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	4 cut(s)	226, 746, 1036, 1069
TaqI	TCGA	3 cut(s)	454, 940, 972
TaqII	GACCGA	1 cut(s)	765
TasI	AATT	5 cut(s)	67, 750, 901, 924, 942
TfiI	GAWTC	2 cut(s)	61, 1054
Tru1I	TTAA	1 cut(s)	957
Tru9I	TTAA	1 cut(s)	957
TscAI	CASTG	2 cut(s)	229, 1041
TseFI	GTSAC	2 cut(s)	703, 1030
TseI	GCWGC	4 cut(s)	41, 230, 866, 989
Tsp45I	GTSAC	2 cut(s)	703, 1030
TspDTI	ATGAA	7 cut(s)	33, 195, 290, 300, 359, 633, 1003
TspRI	CASTG	2 cut(s)	229, 1041
VpaK11BI	GGWCC	1 cut(s)	157
XapI	RAATTY	2 cut(s)	750, 901
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	3 cut(s)	863, 1059, 1075

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.