pycom17g11450

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011236
Physical Location & Seq
Forward (+)
9046404 .. 9049195
2792 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g11450.1

Sequence Viewer

Length: 1404 bp
ATGAGGAAATGCCCCACTCACAGAGTCCCGCCGCTGGTTGTCTCTCCGAAGGCTGTTTCCGATTCCAAGAACTCCCAGACGTGTCTTGATCCCGATGCGAGCCGGAGTGTGTTGGGGATTATCCTGGGTGGGGGAGCTGGGACGAGGCTTTACCCATTGACGAAGAAGCGTGCGAAGCCTGCTGTTCCATTGGGAGCAAACTACAGGCTGATCGATATCCCAGTCAGTAATTGCCTCAACAGCAACGTGTCCAAGATCTATGTGCTGACCCAGTTCAATTCCGCTTCGCTCAATCGCCATCTTTCTCGTGCTTATGCTACTAATATGGGTGGCTACAAAAATGAAGGCTTTGTTGAGGTTCTTGCTGCCCAGCAGAGCCCTGAGAATCCCAATTGGTTTCAGGGTACTGCGGATGCCGTGAGACAGTACTTGTGGTTGTTTGAGGAGCACAATGTGTTGGAATTTTTGGTTCTTGCTGGGGATCATTTGTATAGGATGGACTATGAGAGGTTTATTCAGGCGCATAGAGAAACTGATGCAGACATCACTGTGGCTGCTCTGCCCATGGATGAGAAGCGTGCTACCGCCTTTGGTTTGATGAAGATTGATGAAGAGGGAAGGATTATTGAGTTTGCTGAGAAACCAAAAGGGGAGCAACTCAAAGCTATGAAGGTTGATACAACTATCCTGGGTCTTGATGATGAGAGAGCTAAAGAGATGCCTTATATTGCCAGCATGGGTATATATGTTGTGAGCAAAAATGTCATGTTAGATCTACTTCGAGACAAGTTTCCTGGTGCAAATGATTTCGGGAGTGAAGTTATTCCAGGCGCAACTTCCATTGGTTTGAGAGTTCAAGCTTATTTGTATGATGGCTACTGGGAAGATATTGGTACCATTGAGGCTTTCTACAATGCAAACTTGGGGATAACAAAAAAACCAGTTCCAGATTTCAGCTTTTATGATCGTTCATCCCCTATCTACACCCAACCTCGGTATTTACCTCCATCGAAAATGCTTGATGCTGATGTCACAGATAGTGTTATTGGCGAGGGATGTGTAATAAAGAACTGTAAAATTCACCATTCAGTCGTTGGACTTCGGTCTTGCATAGCAGAGGGTGCTGTCATTGAAGACACATTACTGATGGGAGCTGACTACTATGAGACTGATGCTGACAGGAGGTTCCTTTCTGCGAAGGGCAGCGTTCCAATTGGTATTGGCAAGAATTCCCACGTTAGGAGAGCTATAATTGATAAGAATGCGCGAATTGGAGAGAATGTTAAGATTATCAATAGCGACAATGTGCAAGAATCAGCAAGAGAAACAGACGGATATTTCATAAAGAGCGGGATTGTCACAGTGATCAAGGATGCCTTGATTCCTAGTGGAACAGTAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026
Pfam Domains
Protein Families
NTP_transferase

Protein Analysis

468

Amino Acids

51.57

Weight (kDa)

6.13

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 39 - 312 1.4e-65 Nucleotidyl transferase
LbH_GLGC PF25247 332 - 466 3.5e-54 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48300
fragaria_vesca FvH4_6g40220
malus_domestica MD09G1133900.v1.1 MD17G1122400.v1.1 MD17G1122900.v1.1
prunus_persica Prupe.3G192600_v2.0.a1
pyrus_communis pycom09g05520 pycom17g11260 pycom17g11350 pycom17g11450
rosa_chinensis RchiOBHm_Chr2g0155241
rosa_laevigata RLG00000020829
rosa_multiflora Rmu_sc0012066.1_g000006
rosa_roxburghii Rroxscaffold_2G00093840
rosa_rugosa Rorug02G0446300
rosa_samantha Rh2AG512700 Rh2BG523300 Rh2CG497700 Rh2DG533000
rosa_wichuraiana Rw2G042120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 893
AccB1I GGYRCC 1 cut(s) 893
AccBSI CCGCTC 1 cut(s) 1350
AccII CGCG 1 cut(s) 1267
AciI CCGC 6 cut(s) 29, 32, 282, 410, 585, 1350
AclWI GGATC 2 cut(s) 83, 489
AcsI RAATTY 3 cut(s) 461, 1077, 1228
AdeI CACNNNGTG 1 cut(s) 454
AfaI GTAC 3 cut(s) 406, 428, 895
AfiI CCNNNNNNNGG 4 cut(s) 34, 130, 993, 1239
AflIII ACRYGT 2 cut(s) 80, 246
AgsI TTSAA 3 cut(s) 277, 857, 1133
AjiI CACGTC 1 cut(s) 81
AjnI CCWGG 4 cut(s) 123, 687, 793, 826
AluBI AGCT 7 cut(s) 137, 665, 710, 860, 957, 1154, 1247
AluI AGCT 7 cut(s) 137, 665, 710, 860, 957, 1154, 1247
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 4 cut(s) 46, 415, 777, 1160
AlwI GGATC 2 cut(s) 83, 489
ApeKI GCWGC 3 cut(s) 365, 554, 1203
ApoI RAATTY 3 cut(s) 461, 1077, 1228
Asp700I GAANNNNTTC 1 cut(s) 822
Asp718I GGTACC 1 cut(s) 893
AspLEI GCGC 3 cut(s) 523, 833, 1267
AsuHPI GGTGA 1 cut(s) 1073
BanI GGYRCC 1 cut(s) 893
BanII GRGCYC 1 cut(s) 380
BarI GAAGNNNNNNTAC 2 cut(s) 1125, 1157
BauI CACGAG 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 1140
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 3 cut(s) 352, 541, 1215
BccI CCATC 5 cut(s) 306, 490, 866, 1015, 1141
BceAI ACGGC 1 cut(s) 401
BciT130I CCWGG 4 cut(s) 125, 689, 795, 828
BclI TGATCA 1 cut(s) 1365
BcoDI GTCTC 4 cut(s) 46, 415, 777, 1160
BfaI CTAG 2 cut(s) 1386, 1402
BfmI CTRYAG 1 cut(s) 202
BglII AGATCT 2 cut(s) 255, 772
BisI GCNGC 4 cut(s) 32, 366, 555, 1204
BlsI GCNGC 4 cut(s) 33, 367, 556, 1205
BmcAI AGTACT 1 cut(s) 428
Bme1390I CCNGG 4 cut(s) 125, 689, 795, 828
BmgBI CACGTC 1 cut(s) 81
BmiI GGNNCC 2 cut(s) 895, 1187
BmrFI CCNGG 4 cut(s) 125, 689, 795, 828
BmrI ACTGGG 3 cut(s) 215, 265, 889
BmsI GCATC 7 cut(s) 85, 403, 526, 708, 1012, 1162, 1363
BmuI ACTGGG 3 cut(s) 215, 265, 889
BoxI GACNNNNGTC 1 cut(s) 1102
BpiI GAAGAC 1 cut(s) 1140
Bsa29I ATCGAT 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 215
BsaJI CCNNGG 4 cut(s) 124, 564, 688, 992
BsaXI ACNNNNNCTCC 2 cut(s) 1266, 1296
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 130, 993, 1239
Bse1I ACTGG 4 cut(s) 221, 271, 884, 941
Bse8I GATNNNNATC 1 cut(s) 215
BseBI CCWGG 4 cut(s) 125, 689, 795, 828
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 4 cut(s) 124, 564, 688, 992
BseGI GGATG 6 cut(s) 418, 501, 574, 971, 1061, 1378
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 4 cut(s) 34, 130, 993, 1239
BseMII CTCAG 2 cut(s) 372, 627
BseNI ACTGG 4 cut(s) 221, 271, 884, 941
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 3 cut(s) 352, 541, 1215
BseYI CCCAGC 3 cut(s) 137, 369, 476
Bsh1236I CGCG 1 cut(s) 1267
BshNI GGYRCC 1 cut(s) 893
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 2 cut(s) 11, 154
BslI CCNNNNNNNGG 4 cut(s) 34, 130, 993, 1239
BsmAI GTCTC 4 cut(s) 46, 415, 777, 1160
BsmFI GGGAC 2 cut(s) 11, 154
BsmI GAATGC 1 cut(s) 1267
Bsp1286I GDGCHC 2 cut(s) 380, 450
Bsp143I GATC 7 cut(s) 88, 210, 255, 481, 772, 964, 1365
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 6 cut(s) 29, 32, 282, 410, 585, 1350
BspCNI CTCAG 2 cut(s) 373, 628
BspDI ATCGAT 1 cut(s) 213
BspFNI CGCG 1 cut(s) 1267
BspLI GGNNCC 2 cut(s) 895, 1187
BspPI GGATC 2 cut(s) 83, 489
BspT107I GGYRCC 1 cut(s) 893
BsrBI CCGCTC 1 cut(s) 1350
BsrI ACTGG 4 cut(s) 221, 271, 884, 941
BssECI CCNNGG 4 cut(s) 124, 564, 688, 992
BssMI GATC 7 cut(s) 88, 210, 255, 481, 772, 964, 1365
BssSI CACGAG 1 cut(s) 306
BssT1I CCWWGG 1 cut(s) 564
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 4 cut(s) 125, 689, 795, 828
Bst4CI ACNGT 5 cut(s) 426, 550, 1073, 1363, 1396
Bst6I CTCTTC 1 cut(s) 606
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstC8I GCNNGC 5 cut(s) 100, 171, 180, 579, 733
BstDEI CTNAG 2 cut(s) 381, 636
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 6 cut(s) 418, 501, 574, 971, 1061, 1378
BstFNI CGCG 1 cut(s) 1267
BstHHI GCGC 3 cut(s) 523, 833, 1267
BstKTI GATC 7 cut(s) 91, 213, 258, 484, 775, 967, 1368
BstMAI GTCTC 4 cut(s) 46, 415, 777, 1160
BstMBI GATC 7 cut(s) 88, 210, 255, 481, 772, 964, 1365
BstMWI GCNNNNNNNGC 4 cut(s) 175, 179, 240, 1121
BstNI CCWGG 4 cut(s) 125, 689, 795, 828
BstPAI GACNNNNGTC 1 cut(s) 1102
BstSCI CCNGG 4 cut(s) 123, 687, 793, 826
BstSFI CTRYAG 1 cut(s) 202
BstUI CGCG 1 cut(s) 1267
BstV1I GCAGC 3 cut(s) 352, 541, 1215
BstV2I GAAGAC 1 cut(s) 1140
BstX2I RGATCY 2 cut(s) 255, 772
BstYI RGATCY 2 cut(s) 255, 772
Bsu15I ATCGAT 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 564
BtrI CACGTC 1 cut(s) 81
BtsCI GGATG 6 cut(s) 418, 501, 574, 971, 1061, 1378
BtsIMutI CAGTG 2 cut(s) 546, 1368
Cac8I GCNNGC 5 cut(s) 100, 171, 180, 579, 733
CfoI GCGC 3 cut(s) 523, 833, 1267
ClaI ATCGAT 1 cut(s) 213
Csp6I GTAC 3 cut(s) 405, 427, 894
CviAII CATG 3 cut(s) 565, 736, 766
CviQI GTAC 3 cut(s) 405, 427, 894
DdeI CTNAG 2 cut(s) 381, 636
DpnI GATC 7 cut(s) 90, 212, 257, 483, 774, 966, 1367
DpnII GATC 7 cut(s) 88, 210, 255, 481, 772, 964, 1365
DraIII CACNNNGTG 1 cut(s) 454
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 380
Eco32I GATATC 1 cut(s) 217
EcoRI GAATTC 1 cut(s) 1228
EcoRII CCWGG 4 cut(s) 123, 687, 793, 826
EcoRV GATATC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 380
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 3 cut(s) 568, 739, 769
FalI AAGNNNNNCTT 2 cut(s) 1361, 1393
FaqI GGGAC 2 cut(s) 11, 154
FatI CATG 3 cut(s) 564, 735, 765
FauI CCCGC 2 cut(s) 36, 1343
FbaI TGATCA 1 cut(s) 1365
Fnu4HI GCNGC 4 cut(s) 32, 366, 555, 1204
FokI GGATG 6 cut(s) 425, 508, 581, 958, 1068, 1385
FriOI GRGCYC 1 cut(s) 380
Fsp4HI GCNGC 4 cut(s) 32, 366, 555, 1204
FspBI CTAG 2 cut(s) 1386, 1402
GlaI GCGC 3 cut(s) 522, 832, 1266
GluI GCNGC 4 cut(s) 32, 366, 555, 1204
GsaI CCCAGC 3 cut(s) 141, 373, 480
HapII CCGG 1 cut(s) 103
HhaI GCGC 3 cut(s) 523, 833, 1267
Hin1II CATG 3 cut(s) 568, 739, 769
Hin6I GCGC 3 cut(s) 521, 831, 1265
HinP1I GCGC 3 cut(s) 521, 831, 1265
HindIII AAGCTT 1 cut(s) 858
HinfI GANTC 5 cut(s) 24, 62, 385, 1313, 1381
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 1073
Hpy188I TCNGA 2 cut(s) 48, 61
Hpy188III TCNNGA 6 cut(s) 86, 92, 695, 782, 811, 947
HpyAV CCTTC 5 cut(s) 43, 338, 612, 664, 1192
HpyCH4III ACNGT 5 cut(s) 426, 550, 1073, 1363, 1396
HpyCH4IV ACGT 3 cut(s) 80, 246, 1236
HpyCH4V TGCA 5 cut(s) 539, 800, 917, 1110, 1309
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 179, 240, 1121
HpyF3I CTNAG 2 cut(s) 381, 636
HpySE526I ACGT 3 cut(s) 80, 246, 1236
Hsp92II CATG 3 cut(s) 568, 739, 769
HspAI GCGC 3 cut(s) 521, 831, 1265
KpnI GGTACC 1 cut(s) 897
Ksp22I TGATCA 1 cut(s) 1365
Kzo9I GATC 7 cut(s) 88, 210, 255, 481, 772, 964, 1365
LmnI GCTCC 5 cut(s) 134, 194, 445, 652, 1151
Lsp1109I GCAGC 3 cut(s) 352, 541, 1215
LweI GCATC 7 cut(s) 85, 403, 526, 708, 1012, 1162, 1363
MaeI CTAG 2 cut(s) 1386, 1402
MaeII ACGT 3 cut(s) 80, 246, 1236
MaeIII GTNAC 2 cut(s) 1030, 1357
MalI GATC 7 cut(s) 90, 212, 257, 483, 774, 966, 1367
MbiI CCGCTC 1 cut(s) 1350
MboI GATC 7 cut(s) 88, 210, 255, 481, 772, 964, 1365
MboII GAAGA 5 cut(s) 175, 613, 623, 896, 1145
MfeI CAATTG 2 cut(s) 391, 1212
MflI RGATCY 2 cut(s) 255, 772
MhlI GDGCHC 2 cut(s) 380, 450
MluCI AATT 9 cut(s) 229, 277, 391, 461, 1077, 1212, 1228, 1251, 1269
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 438, 1075
MroXI GAANNNNTTC 1 cut(s) 822
MseI TTAA 1 cut(s) 1284
MslI CAYNNNNRTG 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 4 cut(s) 125, 689, 795, 828
MunI CAATTG 2 cut(s) 391, 1212
Mva1269I GAATGC 1 cut(s) 1267
MvaI CCWGG 4 cut(s) 125, 689, 795, 828
MvnI CGCG 1 cut(s) 1267
MwoI GCNNNNNNNGC 4 cut(s) 175, 179, 240, 1121
NcoI CCATGG 1 cut(s) 564
NdeII GATC 7 cut(s) 88, 210, 255, 481, 772, 964, 1365
NlaIII CATG 3 cut(s) 568, 739, 769
NlaIV GGNNCC 2 cut(s) 895, 1187
NmuCI GTSAC 2 cut(s) 1030, 1357
PctI GAATGC 1 cut(s) 1267
PdmI GAANNNNTTC 1 cut(s) 822
PfeI GAWTC 4 cut(s) 62, 385, 1313, 1381
PkrI GCNGC 4 cut(s) 33, 367, 556, 1205
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PshAI GACNNNNGTC 1 cut(s) 1102
Psp6I CCWGG 4 cut(s) 123, 687, 793, 826
PspFI CCCAGC 3 cut(s) 137, 369, 476
PspGI CCWGG 4 cut(s) 123, 687, 793, 826
PspN4I GGNNCC 2 cut(s) 895, 1187
PsuI RGATCY 2 cut(s) 255, 772
RsaI GTAC 3 cut(s) 406, 428, 895
RsaNI GTAC 3 cut(s) 405, 427, 894
RseI CAYNNNNRTG 1 cut(s) 548
SaqAI TTAA 1 cut(s) 1284
SatI GCNGC 4 cut(s) 32, 366, 555, 1204
Sau3AI GATC 7 cut(s) 88, 210, 255, 481, 772, 964, 1365
ScaI AGTACT 1 cut(s) 428
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 4 cut(s) 125, 689, 795, 828
SduI GDGCHC 2 cut(s) 380, 450
SfaNI GCATC 7 cut(s) 85, 403, 526, 708, 1012, 1162, 1363
SfcI CTRYAG 1 cut(s) 202
SmiMI CAYNNNNRTG 1 cut(s) 548
Sse9I AATT 9 cut(s) 229, 277, 391, 461, 1077, 1212, 1228, 1251, 1269
SsiI CCGC 6 cut(s) 29, 32, 282, 410, 585, 1350
SspMI CTAG 2 cut(s) 1386, 1402
StyD4I CCNGG 4 cut(s) 123, 687, 793, 826
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 5 cut(s) 426, 550, 1073, 1363, 1396
TaiI ACGT 3 cut(s) 83, 249, 1239
TaqI TCGA 3 cut(s) 213, 781, 1010
TaqII GACCGA 1 cut(s) 1092
TasI AATT 9 cut(s) 229, 277, 391, 461, 1077, 1212, 1228, 1251, 1269
TatI WGTACW 1 cut(s) 426
TauI GCSGC 1 cut(s) 34
TfiI GAWTC 4 cut(s) 62, 385, 1313, 1381
Tru1I TTAA 1 cut(s) 1284
Tru9I TTAA 1 cut(s) 1284
TscAI CASTG 2 cut(s) 553, 1368
TseFI GTSAC 2 cut(s) 1030, 1357
TseI GCWGC 3 cut(s) 365, 554, 1203
Tsp45I GTSAC 2 cut(s) 1030, 1357
TspDTI ATGAA 6 cut(s) 357, 614, 624, 683, 960, 1330
TspGWI ACGGA 1 cut(s) 1347
TspRI CASTG 2 cut(s) 553, 1368
XapI RAATTY 3 cut(s) 461, 1077, 1228
XcmI CCANNNNNNNNNTGG 1 cut(s) 1091
XmnI GAANNNNTTC 1 cut(s) 822
XspI CTAG 2 cut(s) 1386, 1402
ZrmI AGTACT 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.