Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006189

Physical Location & Seq

Genomic Coordinates Forward (+)

19590309 .. 19593075

Gene Structure 2767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGTGAATTTGTTCTTATCTGAACCAAAGTGGAACGATGATGCCCAGAAAAGTAGTAACATCAATGTTATTTTGCCTCTGTTAAACAAATTAGGCTCTCAAATTCAATCATTGGTGACTCATGGAGCTCGATCAGAAGCTAGGCTTTGGCTTTGTAGTGCTCTTTCCACTATTTCTATATCTCCTAGCAAGCAACTTAATATCTTCATGAAGTTATTGAGATCAAAACCTAGAAAGATGCAGTTTTTATCTCAGGTTTTGACAATGATGTTTGAGAAGAGACCAAGGAAACTTGGATTTTTGTTAGCTAAAAGAAGTTATATACTTGAGAAGTTCTTTGAAGGGAATCAGAAGCGTATACTAGAGTGGTTTTCTGAGTTTGCTTATGATGGTGGGTCTGATCACAAGAGAGGTGCAAAAGCATTGGCGCAGTTTGCGTTTGCGAATCGGGATATTTGTTGGGAAGAGCTTGAGTGGCGAGGTAAACATGGGCAATCGCCTGCGGTTGTAGCTACAAAGCCTCATTATCTTCTTGATTTAGACGTTGAAAGAACTATTCAGAATTTTCTTGACAATGTCCCTGAGTTCTGGTCTTCCAATGAGTTTGCTGAGTCGCTTAAAGATGGACAGATTTTGTTTCTTGATACCAAATTCTTTATAGATCTCTTTATTCGTTTCATGTATGAAGAAGATATGTATGATGTGTGGGATGCTGTTGAGGAGTTTCTTAGGGAGGAGTCTTTCTCTTCGTTAACACAGCATCTCCTTATCACTCTTGAAGAACGTGACTTGTGTCGATTTCTTGAATTGCTTGGTAACTATTTTGAGCCAGGTATTGAATCTTGGGATAGTGGTGACTCGTCTCGCTGGCTTGGGGTTCTTCTTTCAAGATATGTTGACACAGAATCTATCGACGAGCTGCTGCTGCTGAGTTCTATTATCAATCAAGGTCGTCAGTTGCTGCGGCTTGTACGTGATGAAAACGGGAATGATGAGGGAGAACTGTTGAAAGAAACCATGGCAGAGATATGCAGAGGTTTGGAAAACGAAAGTAGCTTTTCTGTAATTCTGAGAGAGCTCTCGAAGATGAAACACATACAGGTGATAAAATTACTCGGGCTACTTTCTTGGACTATTCACTTCAGACTATCAGAGGAATGTCAGACGCCAGATTCTTGGGAGCTTCTATTTAGAGAAAATGGGATTGAGTTCCGCAGGTCTAGTGACCATTCGTTGCTAAGCTATAATGGATTCTCTGAAGAAAGTGAATCTGACTCAGATAGTAGAAGCCGTGTGTCTAAGAAGAGGCACAAGAGGGAGAAGAAGAAAAGAAAGAAGAAAAAGAAGAGGGCTTTTGATGATGATGATGATCGTGGTGATGATGAGCTTTTAGATCTGCATTCAATAAGTCGAAGTTGGTTGCTATCTACTGATGGGTTTTCTGCAACATGGACCAGTGTGGATTTACCGGAATACATCGCAAAGTATTGTTTGTCGACATGGATGAAGGGGTTATTAGCTAGACAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

510

Amino Acids

59.54

Weight (kDa)

5.76

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48340 AT5G48340 AT5G48340 AT5G48340
fragaria_vesca	FvH4_5g32260
malus_domestica	MD02G1270700.v1.1
prunus_persica	Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1
pyrus_communis	pycom02g23160
rosa_chinensis	RchiOBHm_Chr7g0228451
rosa_laevigata	RLG00000001563
rosa_multiflora	Rmu_sc0004041.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231130
rosa_rugosa	Rorug07G0249400 Rorug07G0249500.1 Rorug07G0249600
rosa_samantha	Rh7AG401900 Rh7BG382900 Rh7CG420900 Rh7DG398000
rosa_wichuraiana	Rw7G033410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1206
AccI	GTMKAC	2 cut(s)	358, 1496
AciI	CCGC	3 cut(s)	503, 964, 1213
AcsI	RAATTY	4 cut(s)	7, 102, 562, 650
AcuI	CTGAAG	2 cut(s)	1126, 1278
AcyI	GRCGYC	1 cut(s)	1166
AfaI	GTAC	1 cut(s)	972
AgsI	TTSAA	9 cut(s)	107, 341, 548, 779, 806, 839, 888, 1009, 1404
AjnI	CCWGG	1 cut(s)	829
Alw21I	GWGCWC	3 cut(s)	130, 163, 1080
Alw26I	GTCTC	2 cut(s)	274, 867
AlwNI	CAGNNNCTG	1 cut(s)	961
Ama87I	CYCGRG	1 cut(s)	1115
ApeKI	GCWGC	4 cut(s)	919, 922, 925, 961
ApoI	RAATTY	4 cut(s)	7, 102, 562, 650
Asp700I	GAANNNNTTC	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	1 cut(s)	1452
AsuHPI	GGTGA	5 cut(s)	16, 127, 866, 1114, 1388
AvaI	CYCGRG	1 cut(s)	1115
AvaII	GGWCC	1 cut(s)	1452
BanII	GRGCYC	2 cut(s)	130, 1080
BbsI	GAAGAC	1 cut(s)	585
Bbv12I	GWGCWC	3 cut(s)	130, 163, 1080
BbvI	GCAGC	4 cut(s)	906, 909, 912, 948
BccI	CCATC	3 cut(s)	383, 617, 1427
BceAI	ACGGC	1 cut(s)	1275
BciT130I	CCWGG	1 cut(s)	831
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	274, 867
BfaI	CTAG	6 cut(s)	141, 186, 231, 362, 1221, 1521
BfuAI	ACCTGC	1 cut(s)	1206
BglII	AGATCT	2 cut(s)	661, 1393
BisI	GCNGC	5 cut(s)	920, 923, 926, 962, 965
BlpI	GCTNAGC	1 cut(s)	1238
BlsI	GCNGC	5 cut(s)	921, 924, 927, 963, 966
Bme1390I	CCNGG	1 cut(s)	831
Bme18I	GGWCC	1 cut(s)	1452
BmeT110I	CYCGRG	1 cut(s)	1115
BmgT120I	GGNCC	1 cut(s)	1452
BmrFI	CCNGG	1 cut(s)	831
BmsI	GCATC	4 cut(s)	31, 228, 700, 769
BoxI	GACNNNNGTC	1 cut(s)	792
BpiI	GAAGAC	1 cut(s)	585
BplI	GAGNNNNNCTC	2 cut(s)	728, 760
Bpu1102I	GCTNAGC	1 cut(s)	1238
BpuEI	CTTGAG	2 cut(s)	347, 491
BsaAI	YACGTR	1 cut(s)	974
BsaBI	GATNNNNATC	1 cut(s)	1368
BsaHI	GRCGYC	1 cut(s)	1166
BsaI	GGTCTC	1 cut(s)	274
BsaJI	CCNNGG	2 cut(s)	284, 1017
BsaWI	WCCGGW	1 cut(s)	1468
BsaXI	ACNNNNNCTCC	2 cut(s)	747, 777
Bse1I	ACTGG	1 cut(s)	1455
Bse8I	GATNNNNATC	1 cut(s)	1368
BseBI	CCWGG	1 cut(s)	831
BseDI	CCNNGG	2 cut(s)	284, 1017
BseGI	GGATG	2 cut(s)	715, 1509
BseJI	GATNNNNATC	1 cut(s)	1368
BseMII	CTCAG	7 cut(s)	266, 366, 573, 600, 920, 1061, 1290
BseNI	ACTGG	1 cut(s)	1455
BseRI	GAGGAG	2 cut(s)	734, 749
BseXI	GCAGC	4 cut(s)	906, 909, 912, 948
BsiHKAI	GWGCWC	3 cut(s)	130, 163, 1080
BsiHKCI	CYCGRG	1 cut(s)	1115
BsiSI	CCGG	1 cut(s)	1469
BslFI	GGGAC	1 cut(s)	563
BsmAI	GTCTC	2 cut(s)	274, 867
BsmBI	CGTCTC	1 cut(s)	867
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	1399
Bso31I	GGTCTC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	1115
Bsp1286I	GDGCHC	3 cut(s)	130, 163, 1080
Bsp143I	GATC	6 cut(s)	131, 221, 400, 661, 1369, 1393
Bsp1720I	GCTNAGC	1 cut(s)	1238
Bsp19I	CCATGG	1 cut(s)	1017
BspACI	CCGC	3 cut(s)	503, 964, 1213
BspCNI	CTCAG	7 cut(s)	265, 367, 574, 601, 921, 1062, 1289
BspHI	TCATGA	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	1206
BspQI	GCTCTTC	1 cut(s)	459
BspTNI	GGTCTC	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	1455
BssECI	CCNNGG	2 cut(s)	284, 1017
BssMI	GATC	6 cut(s)	131, 221, 400, 661, 1369, 1393
BssNAI	GTATAC	1 cut(s)	359
BssNI	GRCGYC	1 cut(s)	1166
BssT1I	CCWWGG	2 cut(s)	284, 1017
Bst1107I	GTATAC	1 cut(s)	359
Bst2UI	CCWGG	1 cut(s)	831
Bst4CI	ACNGT	1 cut(s)	1005
Bst6I	CTCTTC	5 cut(s)	272, 459, 751, 1298, 1340
BstACI	GRCGYC	1 cut(s)	1166
BstBAI	YACGTR	1 cut(s)	974
BstC8I	GCNNGC	3 cut(s)	191, 501, 869
BstDSI	CCRYGG	1 cut(s)	1017
BstF5I	GGATG	2 cut(s)	715, 1509
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	6 cut(s)	134, 224, 403, 664, 1372, 1396
BstMAI	GTCTC	2 cut(s)	274, 867
BstMBI	GATC	6 cut(s)	131, 221, 400, 661, 1369, 1393
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 475, 509, 925
BstNI	CCWGG	1 cut(s)	831
BstPAI	GACNNNNGTC	1 cut(s)	792
BstSCI	CCNGG	1 cut(s)	829
BstV1I	GCAGC	4 cut(s)	906, 909, 912, 948
BstV2I	GAAGAC	1 cut(s)	585
BstX2I	RGATCY	2 cut(s)	661, 1393
BstXI	CCANNNNNNTGG	1 cut(s)	1176
BstYI	RGATCY	2 cut(s)	661, 1393
BstZ17I	GTATAC	1 cut(s)	359
BtgI	CCRYGG	1 cut(s)	1017
BtgZI	GCGATG	1 cut(s)	1462
BtsCI	GGATG	2 cut(s)	715, 1509
BtsIMutI	CAGTG	1 cut(s)	1462
BveI	ACCTGC	1 cut(s)	1206
Cac8I	GCNNGC	3 cut(s)	191, 501, 869
CaiI	CAGNNNCTG	1 cut(s)	961
CciI	TCATGA	1 cut(s)	207
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	1452
CseI	GACGC	1 cut(s)	1174
Csp6I	GTAC	1 cut(s)	971
CviAII	CATG	7 cut(s)	122, 208, 488, 679, 1018, 1449, 1500
CviQI	GTAC	1 cut(s)	971
DpnI	GATC	6 cut(s)	133, 223, 402, 663, 1371, 1395
DpnII	GATC	6 cut(s)	131, 221, 400, 661, 1369, 1393
Eam1104I	CTCTTC	5 cut(s)	272, 459, 751, 1298, 1340
EarI	CTCTTC	5 cut(s)	272, 459, 751, 1298, 1340
Ecl136II	GAGCTC	2 cut(s)	128, 1078
Eco130I	CCWWGG	2 cut(s)	284, 1017
Eco24I	GRGCYC	2 cut(s)	130, 1080
Eco31I	GGTCTC	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	1452
Eco53kI	GAGCTC	2 cut(s)	128, 1078
Eco57I	CTGAAG	2 cut(s)	1126, 1278
Eco88I	CYCGRG	1 cut(s)	1115
EcoICRI	GAGCTC	2 cut(s)	128, 1078
EcoRII	CCWGG	1 cut(s)	829
EcoT14I	CCWWGG	2 cut(s)	284, 1017
EcoT38I	GRGCYC	2 cut(s)	130, 1080
ErhI	CCWWGG	2 cut(s)	284, 1017
Esp3I	CGTCTC	1 cut(s)	867
FaeI	CATG	7 cut(s)	125, 211, 491, 682, 1021, 1452, 1503
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	7 cut(s)	121, 207, 487, 678, 1017, 1448, 1499
FbaI	TGATCA	1 cut(s)	400
FblI	GTMKAC	2 cut(s)	358, 1496
Fnu4HI	GCNGC	5 cut(s)	920, 923, 926, 962, 965
FokI	GGATG	2 cut(s)	722, 1516
FriOI	GRGCYC	2 cut(s)	130, 1080
Fsp4HI	GCNGC	5 cut(s)	920, 923, 926, 962, 965
FspBI	CTAG	6 cut(s)	141, 186, 231, 362, 1221, 1521
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	5 cut(s)	920, 923, 926, 962, 965
HapII	CCGG	1 cut(s)	1469
HgaI	GACGC	1 cut(s)	1174
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	1166
Hin1II	CATG	7 cut(s)	125, 211, 491, 682, 1021, 1452, 1503
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	3 cut(s)	753, 898, 1497
HindII	GTYRAC	3 cut(s)	753, 898, 1497
HpaI	GTTAAC	1 cut(s)	753
HpaII	CCGG	1 cut(s)	1469
HphI	GGTGA	5 cut(s)	16, 127, 866, 1114, 1388
Hpy166II	GTNNAC	5 cut(s)	359, 485, 753, 898, 1497
Hpy188III	TCNNGA	9 cut(s)	208, 449, 533, 569, 641, 776, 803, 888, 1081
Hpy8I	GTNNAC	5 cut(s)	359, 485, 753, 898, 1497
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	2 cut(s)	335, 1501
HpyCH4III	ACNGT	1 cut(s)	1005
HpyCH4IV	ACGT	3 cut(s)	543, 784, 973
HpyCH4V	TGCA	5 cut(s)	241, 416, 1032, 1399, 1445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 475, 509, 925
HpySE526I	ACGT	3 cut(s)	543, 784, 973
Hsp92I	GRCGYC	1 cut(s)	1166
Hsp92II	CATG	7 cut(s)	125, 211, 491, 682, 1021, 1452, 1503
HspAI	GCGC	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	400
KspAI	GTTAAC	1 cut(s)	753
Kzo9I	GATC	6 cut(s)	131, 221, 400, 661, 1369, 1393
LguI	GCTCTTC	1 cut(s)	459
LmnI	GCTCC	2 cut(s)	125, 1180
Lsp1109I	GCAGC	4 cut(s)	906, 909, 912, 948
LweI	GCATC	4 cut(s)	31, 228, 700, 769
MaeI	CTAG	6 cut(s)	141, 186, 231, 362, 1221, 1521
MaeII	ACGT	3 cut(s)	543, 784, 973
MaeIII	GTNAC	6 cut(s)	56, 115, 785, 815, 854, 1223
MalI	GATC	6 cut(s)	133, 223, 402, 663, 1371, 1395
MboI	GATC	6 cut(s)	131, 221, 400, 661, 1369, 1393
MflI	RGATCY	2 cut(s)	661, 1393
MhlI	GDGCHC	3 cut(s)	130, 163, 1080
MluCI	AATT	8 cut(s)	7, 89, 102, 562, 650, 806, 1065, 1109
MlyI	GAGTC	5 cut(s)	112, 620, 746, 851, 1268
MroXI	GAANNNNTTC	1 cut(s)	11
MseI	TTAA	4 cut(s)	83, 198, 618, 752
MslI	CAYNNNNRTG	1 cut(s)	1100
MspI	CCGG	1 cut(s)	1469
MspR9I	CCNGG	1 cut(s)	831
Mva1269I	GAATGC	1 cut(s)	1399
MvaI	CCWGG	1 cut(s)	831
MwoI	GCNNNNNNNGC	4 cut(s)	434, 475, 509, 925
NcoI	CCATGG	1 cut(s)	1017
NdeII	GATC	6 cut(s)	131, 221, 400, 661, 1369, 1393
NlaIII	CATG	7 cut(s)	125, 211, 491, 682, 1021, 1452, 1503
NmuCI	GTSAC	4 cut(s)	115, 785, 854, 1223
PagI	TCATGA	1 cut(s)	207
PciSI	GCTCTTC	1 cut(s)	459
PctI	GAATGC	1 cut(s)	1399
PdmI	GAANNNNTTC	1 cut(s)	11
PfeI	GAWTC	7 cut(s)	346, 445, 839, 905, 1172, 1251, 1268
PflFI	GACNNNGTC	1 cut(s)	575
PkrI	GCNGC	5 cut(s)	921, 924, 927, 963, 966
PleI	GAGTC	5 cut(s)	112, 619, 745, 851, 1268
PpsI	GAGTC	5 cut(s)	112, 619, 745, 851, 1268
Ppu21I	YACGTR	1 cut(s)	974
PshAI	GACNNNNGTC	1 cut(s)	792
Psp124BI	GAGCTC	2 cut(s)	130, 1080
Psp6I	CCWGG	1 cut(s)	829
PspGI	CCWGG	1 cut(s)	829
PspPI	GGNCC	1 cut(s)	1452
PstNI	CAGNNNCTG	1 cut(s)	961
PsuI	RGATCY	2 cut(s)	661, 1393
PsyI	GACNNNGTC	1 cut(s)	575
RsaI	GTAC	1 cut(s)	972
RsaNI	GTAC	1 cut(s)	971
RseI	CAYNNNNRTG	1 cut(s)	1100
SacI	GAGCTC	2 cut(s)	130, 1080
SalI	GTCGAC	1 cut(s)	1495
SapI	GCTCTTC	1 cut(s)	459
SaqAI	TTAA	4 cut(s)	83, 198, 618, 752
SatI	GCNGC	5 cut(s)	920, 923, 926, 962, 965
Sau3AI	GATC	6 cut(s)	131, 221, 400, 661, 1369, 1393
Sau96I	GGNCC	1 cut(s)	1452
SchI	GAGTC	5 cut(s)	112, 620, 746, 851, 1268
ScrFI	CCNGG	1 cut(s)	831
SduI	GDGCHC	3 cut(s)	130, 163, 1080
SfaNI	GCATC	4 cut(s)	31, 228, 700, 769
SinI	GGWCC	1 cut(s)	1452
SmiMI	CAYNNNNRTG	1 cut(s)	1100
SmlI	CTYRAG	2 cut(s)	326, 470
SmoI	CTYRAG	2 cut(s)	326, 470
Sse9I	AATT	8 cut(s)	7, 89, 102, 562, 650, 806, 1065, 1109
SsiI	CCGC	3 cut(s)	503, 964, 1213
SspMI	CTAG	6 cut(s)	141, 186, 231, 362, 1221, 1521
SstI	GAGCTC	2 cut(s)	130, 1080
StyD4I	CCNGG	1 cut(s)	829
StyI	CCWWGG	2 cut(s)	284, 1017
TaaI	ACNGT	1 cut(s)	1005
TaiI	ACGT	3 cut(s)	546, 787, 976
TaqI	TCGA	6 cut(s)	130, 796, 912, 1082, 1411, 1496
TasI	AATT	8 cut(s)	7, 89, 102, 562, 650, 806, 1065, 1109
TauI	GCSGC	1 cut(s)	967
TfiI	GAWTC	7 cut(s)	346, 445, 839, 905, 1172, 1251, 1268
Tru1I	TTAA	4 cut(s)	83, 198, 618, 752
Tru9I	TTAA	4 cut(s)	83, 198, 618, 752
TscAI	CASTG	1 cut(s)	1462
TseFI	GTSAC	4 cut(s)	115, 785, 854, 1223
TseI	GCWGC	4 cut(s)	919, 922, 925, 961
Tsp45I	GTSAC	4 cut(s)	115, 785, 854, 1223
TspDTI	ATGAA	7 cut(s)	196, 224, 667, 699, 993, 1103, 1520
TspRI	CASTG	1 cut(s)	1462
Tth111I	GACNNNGTC	1 cut(s)	575
VpaK11BI	GGWCC	1 cut(s)	1452
XapI	RAATTY	4 cut(s)	7, 102, 562, 650
XmiI	GTMKAC	2 cut(s)	358, 1496
XmnI	GAANNNNTTC	1 cut(s)	11
XspI	CTAG	6 cut(s)	141, 186, 231, 362, 1221, 1521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.