Rh7BG382900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0006189
Physical Location & Seq
Forward (+)
41406864 .. 41409448
2585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG382900.1

Sequence Viewer

Length: 1530 bp
ATGCTTGATCTGTTTCTGTCGGAGCCCAATTGGAAAGAAGACGACTCTGCTGAGATGAGAGTGTCTCTTTTGAACAAATTGGAATCTGTTATTTGGTCGTTGATGGCTTCTGGAGGTCGATCAGAGGCTAGACTATGGCTTTGCAACACTATAGCTGGCATAAGTTCTATCACTCATCATCATCAACGTGAGTTATTTATCGACTTATTGAGATCTAAGCCACTGAAGAAGCGCTTAGCAACTCAGCTCCTGCACATGATATTTGATAATAGGCCACAAAAGGCAGGGTCTGTCATAGCCAAGAGAAGTTATGCGCTTAGGAAATTTTTTCAAGGAAACCCAACACGAATATCTCAGTGGTTTTCCAAAACTGGTTCTGGATTGAGGCAGGGACAAGGTTCTAATGCGTTATCCCAATTTGCTTTTGTTAATCGAGATAATTGTTGGGAGGAGCTTGAGTGGAAGGGAAAACATGGGCAGTCACCGGCGGTAGTTGCTACCAAACCCCATTACTTTCTTGATTTGGACGTCCAGCAAACCGTAGAGAATTTCCTTGAAAATGTGCCTGAATTTTGGTCATCCAATGAGTTTTCTGAGTCACTTAAAGGTGGAGAAATTTTGATCATTGATAGAAACTTTTTTGTTCTATATTTTCTGGATTTGATGTACAAAGAAGATGCCAGAGATGTATGGGAAGTTACGAATGAGTTCCTGGAGGAGGAGCGCTTTTCTTCCTTGTGTAAACATCTTCTTATTACTCTTGAGGAGTCAGACTTATGTGATTTTCTTAAAATGCTTCATAAACATGTCAAGCCTAAAGTAGAATGCAAAGATCCTATGGACTCCTCTTATTTGTTTGAAGTTGTAGTATCTAGGTGCAGTGATTGTGGGTGCTTTGATCAGATATTACTGTTAAATGCAGTTTTTAACTATCGACGCCAGCTTCTACGACTCTTACGAGATGAAGGAGCGCCCGAGGATCAAGCAAGATTACAAGATATTGTGTCCGAGATTTGTGCAATCCCAGGCAGTGAAAATAGCATGGCACCAATAATTAAAGGGGGTTCTAAACTGAAGACTATAGAAGCATTTAAATTGATGGGGCTTCAGTCATGGGTCCTCTTTTTTAGTTTATCAGAAAAATGCCAGACTCCTCAGTCTTGGGAATCATTATTTTTTGATAATGAAATAAGTTTTCGAAAGTATGATAAATATTCATTTATTCATGATAATGAAGTTGCTGAAGAAGGTGGTTCTGATTTGGATTATAGAGGGTCCAAAAAAGTTAAGCGAAGGAAAAAGACTAGTAGTAGAAGGAAAAGAAGAAGGCACTTTGATCATGATGACAATGAGTTGCTGGATTTCGATGCTACAAATAATAGGCTGGATTTGCATTCTAGTGTGGGAAGTTGGTTGCTCTCACTTGATGGGTATACTGCATCATGGAACAGTGCGGATTTACCCGAATATCTTTCCAAGTATTGCTTGTCTACATGGATGAAGTGGGCATTAGCACAGTGGGATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

509

Amino Acids

59.08

Weight (kDa)

6.06

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1156
AatII GACGTC 1 cut(s) 531
AccB1I GGYRCC 1 cut(s) 1045
AccI GTMKAC 2 cut(s) 1433, 1490
AciI CCGC 2 cut(s) 488, 1454
AclWI GGATC 2 cut(s) 827, 987
AcsI RAATTY 4 cut(s) 323, 547, 569, 615
AcuI CTGAAG 4 cut(s) 245, 1091, 1094, 1263
AcyI GRCGYC 2 cut(s) 528, 937
AfaI GTAC 1 cut(s) 668
AfeI AGCGCT 2 cut(s) 233, 725
AfiI CCNNNNNNNGG 1 cut(s) 718
AflIII ACRYGT 1 cut(s) 805
AgsI TTSAA 4 cut(s) 73, 332, 557, 860
AhlI ACTAGT 1 cut(s) 1304
AjnI CCWGG 2 cut(s) 711, 1024
AluBI AGCT 4 cut(s) 155, 247, 454, 943
AluI AGCT 4 cut(s) 155, 247, 454, 943
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 2 cut(s) 827, 987
AlwNI CAGNNNCTG 2 cut(s) 250, 290
Ama87I CYCGRG 1 cut(s) 974
Aor51HI AGCGCT 2 cut(s) 233, 725
AoxI GGCC 1 cut(s) 272
ApoI RAATTY 4 cut(s) 323, 547, 569, 615
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
Asp700I GAANNNNTTC 1 cut(s) 707
AspLEI GCGC 4 cut(s) 234, 316, 726, 973
AspS9I GGNCC 2 cut(s) 1117, 1275
AsuHPI GGTGA 1 cut(s) 474
AsuII TTCGAA 1 cut(s) 1198
AvaI CYCGRG 1 cut(s) 974
AvaII GGWCC 2 cut(s) 1117, 1275
BanI GGYRCC 1 cut(s) 1045
BanII GRGCYC 1 cut(s) 27
BbsI GAAGAC 2 cut(s) 45, 1082
BccI CCATC 3 cut(s) 97, 1093, 1421
BcgI CGANNNNNNTGC 2 cut(s) 998, 1032
BciT130I CCWGG 2 cut(s) 713, 1026
BclI TGATCA 3 cut(s) 621, 898, 1336
BcoDI GTCTC 1 cut(s) 69
BcuI ACTAGT 1 cut(s) 1304
BfaI CTAG 4 cut(s) 129, 873, 1305, 1398
BfmI CTRYAG 2 cut(s) 150, 1080
BfoI RGCGCY 3 cut(s) 235, 727, 974
BglII AGATCT 1 cut(s) 212
BlpI GCTNAGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 713, 1026
Bme18I GGWCC 2 cut(s) 1117, 1275
BmeT110I CYCGRG 1 cut(s) 974
BmgT120I GGNCC 2 cut(s) 1117, 1275
BmiI GGNNCC 4 cut(s) 24, 1047, 1118, 1276
BmrFI CCNGG 2 cut(s) 713, 1026
BmsI GCATC 3 cut(s) 667, 1357, 1448
BpiI GAAGAC 2 cut(s) 45, 1082
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 2 cut(s) 132, 734
Bpu10I CCTNAGC 1 cut(s) 317
Bpu1102I GCTNAGC 1 cut(s) 235
Bpu14I TTCGAA 1 cut(s) 1198
BpuEI CTTGAG 2 cut(s) 476, 782
BsaHI GRCGYC 2 cut(s) 528, 937
BsaJI CCNNGG 2 cut(s) 975, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 376
BseBI CCWGG 2 cut(s) 713, 1026
BseDI CCNNGG 2 cut(s) 975, 1024
BseGI GGATG 2 cut(s) 578, 1503
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMII CTCAG 5 cut(s) 42, 257, 368, 585, 1169
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 6 cut(s) 464, 731, 734, 779, 835, 1143
BsgI GTGCAG 2 cut(s) 236, 898
BshFI GGCC 1 cut(s) 274
BshNI GGYRCC 1 cut(s) 1045
BsiHKCI CYCGRG 1 cut(s) 974
BsiSI CCGG 1 cut(s) 485
BslFI GGGAC 1 cut(s) 405
BslI CCNNNNNNNGG 1 cut(s) 718
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 405
BsmI GAATGC 2 cut(s) 830, 1393
BsnI GGCC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 974
Bsp119I TTCGAA 1 cut(s) 1198
Bsp1286I GDGCHC 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 9 cut(s) 7, 119, 212, 621, 832, 898, 979, 1336, 1522
Bsp1720I GCTNAGC 1 cut(s) 235
BspACI CCGC 2 cut(s) 488, 1454
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 5 cut(s) 43, 256, 367, 586, 1168
BspHI TCATGA 2 cut(s) 1225, 1339
BspLI GGNNCC 4 cut(s) 24, 1047, 1118, 1276
BspPI GGATC 2 cut(s) 827, 987
BspT104I TTCGAA 1 cut(s) 1198
BspT107I GGYRCC 1 cut(s) 1045
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 975, 1024
BssMI GATC 9 cut(s) 7, 119, 212, 621, 832, 898, 979, 1336, 1522
BssNAI GTATAC 1 cut(s) 1434
BssNI GRCGYC 2 cut(s) 528, 937
Bst1107I GTATAC 1 cut(s) 1434
Bst2UI CCWGG 2 cut(s) 713, 1026
Bst4CI ACNGT 4 cut(s) 541, 912, 1451, 1518
BstACI GRCGYC 2 cut(s) 528, 937
BstAUI TGTACA 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 1198
BstC8I GCNNGC 2 cut(s) 157, 941
BstDEI CTNAG 8 cut(s) 51, 216, 235, 243, 317, 354, 594, 1155
BstENI CCTNNNNNAGG 1 cut(s) 716
BstF5I GGATG 2 cut(s) 578, 1503
BstH2I RGCGCY 3 cut(s) 235, 727, 974
BstHHI GCGC 4 cut(s) 234, 316, 726, 973
BstKTI GATC 9 cut(s) 10, 122, 215, 624, 835, 901, 982, 1339, 1525
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 9 cut(s) 7, 119, 212, 621, 832, 898, 979, 1336, 1522
BstMWI GCNNNNNNNGC 2 cut(s) 494, 1390
BstNI CCWGG 2 cut(s) 713, 1026
BstNSI RCATGY 1 cut(s) 809
BstSCI CCNGG 2 cut(s) 711, 1024
BstSFI CTRYAG 2 cut(s) 150, 1080
BstV2I GAAGAC 2 cut(s) 45, 1082
BstX2I RGATCY 2 cut(s) 212, 832
BstYI RGATCY 2 cut(s) 212, 832
BstZ17I GTATAC 1 cut(s) 1434
BsuRI GGCC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 578, 1503
BtsI GCAGTG 2 cut(s) 886, 1036
BtsIMutI CAGTG 6 cut(s) 221, 362, 886, 1036, 1456, 1523
Cac8I GCNNGC 2 cut(s) 157, 941
CaiI CAGNNNCTG 2 cut(s) 250, 290
CciI TCATGA 2 cut(s) 1225, 1339
CfoI GCGC 4 cut(s) 234, 316, 726, 973
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 1117, 1275
CseI GACGC 1 cut(s) 945
Csp6I GTAC 1 cut(s) 667
CviAII CATG 9 cut(s) 256, 473, 806, 1042, 1113, 1226, 1340, 1443, 1494
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 8 cut(s) 51, 216, 235, 243, 317, 354, 594, 1155
DpnI GATC 9 cut(s) 9, 121, 214, 623, 834, 900, 981, 1338, 1524
DpnII GATC 9 cut(s) 7, 119, 212, 621, 832, 898, 979, 1336, 1522
DraI TTTAAA 1 cut(s) 1093
DrdI GACNNNNNNGTC 1 cut(s) 1156
DseDI GACNNNNNNGTC 1 cut(s) 1156
Eco24I GRGCYC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 1117, 1275
Eco47III AGCGCT 2 cut(s) 233, 725
Eco57I CTGAAG 4 cut(s) 245, 1091, 1094, 1263
Eco88I CYCGRG 1 cut(s) 974
EcoNI CCTNNNNNAGG 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 1117
EcoRII CCWGG 2 cut(s) 711, 1024
EcoT38I GRGCYC 1 cut(s) 27
FaeI CATG 9 cut(s) 259, 476, 809, 1045, 1116, 1229, 1343, 1446, 1497
FalI AAGNNNNNCTT 4 cut(s) 218, 250, 1469, 1501
FaqI GGGAC 1 cut(s) 405
FatI CATG 9 cut(s) 255, 472, 805, 1041, 1112, 1225, 1339, 1442, 1493
FbaI TGATCA 3 cut(s) 621, 898, 1336
FblI GTMKAC 2 cut(s) 1433, 1490
FokI GGATG 2 cut(s) 565, 1510
FriOI GRGCYC 1 cut(s) 27
FspBI CTAG 4 cut(s) 129, 873, 1305, 1398
GlaI GCGC 4 cut(s) 233, 315, 725, 972
GsuI CTGGAG 2 cut(s) 132, 734
HaeII RGCGCY 3 cut(s) 235, 727, 974
HaeIII GGCC 1 cut(s) 274
HapII CCGG 1 cut(s) 485
HgaI GACGC 1 cut(s) 945
HhaI GCGC 4 cut(s) 234, 316, 726, 973
Hin1I GRCGYC 2 cut(s) 528, 937
Hin1II CATG 9 cut(s) 259, 476, 809, 1045, 1116, 1229, 1343, 1446, 1497
Hin6I GCGC 4 cut(s) 232, 314, 724, 971
HinP1I GCGC 4 cut(s) 232, 314, 724, 971
HinfI GANTC 8 cut(s) 44, 83, 596, 767, 842, 951, 1150, 1166
HpaII CCGG 1 cut(s) 485
HphI GGTGA 1 cut(s) 474
Hpy166II GTNNAC 3 cut(s) 743, 1434, 1491
Hpy188I TCNGA 8 cut(s) 22, 124, 595, 772, 903, 1009, 1138, 1258
Hpy188III TCNNGA 8 cut(s) 111, 378, 434, 518, 656, 761, 1226, 1340
Hpy8I GTNNAC 3 cut(s) 743, 1434, 1491
Hpy99I CGWCG 1 cut(s) 939
HpyAV CCTTC 6 cut(s) 457, 959, 1241, 1287, 1308, 1320
HpyCH4III ACNGT 4 cut(s) 541, 912, 1451, 1518
HpyCH4IV ACGT 2 cut(s) 187, 528
HpyCH4V TGCA 8 cut(s) 144, 253, 828, 879, 920, 1019, 1393, 1439
HpyF10VI GCNNNNNNNGC 2 cut(s) 494, 1390
HpyF3I CTNAG 8 cut(s) 51, 216, 235, 243, 317, 354, 594, 1155
HpySE526I ACGT 2 cut(s) 187, 528
Hsp92I GRCGYC 2 cut(s) 528, 937
Hsp92II CATG 9 cut(s) 259, 476, 809, 1045, 1116, 1229, 1343, 1446, 1497
HspAI GCGC 4 cut(s) 232, 314, 724, 971
Ksp22I TGATCA 3 cut(s) 621, 898, 1336
Kzo9I GATC 9 cut(s) 7, 119, 212, 621, 832, 898, 979, 1336, 1522
LmnI GCTCC 5 cut(s) 22, 252, 451, 721, 968
LweI GCATC 3 cut(s) 667, 1357, 1448
MaeI CTAG 4 cut(s) 129, 873, 1305, 1398
MaeII ACGT 2 cut(s) 187, 528
MaeIII GTNAC 3 cut(s) 480, 597, 697
MalI GATC 9 cut(s) 9, 121, 214, 623, 834, 900, 981, 1338, 1524
MboI GATC 9 cut(s) 7, 119, 212, 621, 832, 898, 979, 1336, 1522
MboII GAAGA 8 cut(s) 50, 238, 686, 723, 740, 1087, 1256, 1335
MfeI CAATTG 1 cut(s) 28
MflI RGATCY 2 cut(s) 212, 832
MhlI GDGCHC 1 cut(s) 27
MlyI GAGTC 6 cut(s) 38, 605, 776, 836, 945, 1144
MroXI GAANNNNTTC 1 cut(s) 707
MseI TTAA 8 cut(s) 429, 603, 789, 914, 927, 1056, 1092, 1287
MslI CAYNNNNRTG 4 cut(s) 186, 804, 1230, 1398
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 2 cut(s) 713, 1026
MunI CAATTG 1 cut(s) 28
Mva1269I GAATGC 2 cut(s) 830, 1393
MvaI CCWGG 2 cut(s) 713, 1026
MwoI GCNNNNNNNGC 2 cut(s) 494, 1390
NdeII GATC 9 cut(s) 7, 119, 212, 621, 832, 898, 979, 1336, 1522
NlaIII CATG 9 cut(s) 259, 476, 809, 1045, 1116, 1229, 1343, 1446, 1497
NlaIV GGNNCC 4 cut(s) 24, 1047, 1118, 1276
NmuCI GTSAC 2 cut(s) 480, 597
NspI RCATGY 1 cut(s) 809
NspV TTCGAA 1 cut(s) 1198
PagI TCATGA 2 cut(s) 1225, 1339
PciI ACATGT 1 cut(s) 805
PcsI WCGNNNNNNNCGW 1 cut(s) 955
PctI GAATGC 2 cut(s) 830, 1393
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 2 cut(s) 83, 1166
PfoI TCCNGGA 1 cut(s) 711
PleI GAGTC 6 cut(s) 38, 604, 775, 836, 945, 1144
PpsI GAGTC 6 cut(s) 38, 604, 775, 836, 945, 1144
PpuMI RGGWCCY 1 cut(s) 1117
PscI ACATGT 1 cut(s) 805
Psp5II RGGWCCY 1 cut(s) 1117
Psp6I CCWGG 2 cut(s) 711, 1024
PspGI CCWGG 2 cut(s) 711, 1024
PspN4I GGNNCC 4 cut(s) 24, 1047, 1118, 1276
PspPI GGNCC 2 cut(s) 1117, 1275
PspPPI RGGWCCY 1 cut(s) 1117
PstNI CAGNNNCTG 2 cut(s) 250, 290
PsuI RGATCY 2 cut(s) 212, 832
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 4 cut(s) 186, 804, 1230, 1398
SaqAI TTAA 8 cut(s) 429, 603, 789, 914, 927, 1056, 1092, 1287
Sau3AI GATC 9 cut(s) 7, 119, 212, 621, 832, 898, 979, 1336, 1522
Sau96I GGNCC 2 cut(s) 1117, 1275
SchI GAGTC 6 cut(s) 38, 605, 776, 836, 945, 1144
ScrFI CCNGG 2 cut(s) 713, 1026
SduI GDGCHC 1 cut(s) 27
SfaNI GCATC 3 cut(s) 667, 1357, 1448
SfcI CTRYAG 2 cut(s) 150, 1080
SfuI TTCGAA 1 cut(s) 1198
SgrAI CRCCGGYG 1 cut(s) 484
SinI GGWCC 2 cut(s) 1117, 1275
SmiI ATTTAAAT 1 cut(s) 1093
SmiMI CAYNNNNRTG 4 cut(s) 186, 804, 1230, 1398
SmlI CTYRAG 2 cut(s) 455, 761
SmoI CTYRAG 2 cut(s) 455, 761
SpeI ACTAGT 1 cut(s) 1304
SsiI CCGC 2 cut(s) 488, 1454
SspI AATATT 1 cut(s) 1214
SspMI CTAG 4 cut(s) 129, 873, 1305, 1398
StyD4I CCNGG 2 cut(s) 711, 1024
SwaI ATTTAAAT 1 cut(s) 1093
TaaI ACNGT 4 cut(s) 541, 912, 1451, 1518
TaiI ACGT 2 cut(s) 190, 531
TaqI TCGA 6 cut(s) 118, 201, 433, 934, 1198, 1365
TatI WGTACW 1 cut(s) 666
TfiI GAWTC 2 cut(s) 83, 1166
Tru1I TTAA 8 cut(s) 429, 603, 789, 914, 927, 1056, 1092, 1287
Tru9I TTAA 8 cut(s) 429, 603, 789, 914, 927, 1056, 1092, 1287
TscAI CASTG 6 cut(s) 228, 362, 886, 1036, 1456, 1523
TseFI GTSAC 2 cut(s) 480, 597
Tsp45I GTSAC 2 cut(s) 480, 597
TspDTI ATGAA 7 cut(s) 788, 978, 1200, 1206, 1214, 1248, 1514
TspRI CASTG 6 cut(s) 228, 362, 886, 1036, 1456, 1523
VpaK11BI GGWCC 2 cut(s) 1117, 1275
XagI CCTNNNNNAGG 1 cut(s) 716
XapI RAATTY 4 cut(s) 323, 547, 569, 615
XceI RCATGY 1 cut(s) 809
XmiI GTMKAC 2 cut(s) 1433, 1490
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 4 cut(s) 129, 873, 1305, 1398
ZraI GACGTC 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.