Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006189

Physical Location & Seq

Genomic Coordinates Reverse (-)

32549590 .. 32556847

Gene Structure 7258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1270700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1524 bp

ATGCTTCAATTGTTTCTATCAGAGCCCATCTGGAATGACAATGGAGATGAGAATTCTGCCAAGATTAGAGTATCTCTCTTGAGTCAATTGGAATCTACTATTTGGTTGTTCATGGCATCTGGAGGCCGTTCAGAGGCTCGACTGTGGCTTTGTAACACAATAGGCAGAATAAGTTCTCTCACTCGTCACAATCAGTGCGAGTTACTTTTGGACTTGCTGAGATCTAAACCCCTTAAGAAGGGCTTCGCATCTCAGCTTGTAGAAATGATATTTGAGAATAGTCCACATAAAGCAGGGTCTATCATATCCAAGCGAAGTTACACACTAAAGAAATTTTTTGAAGGAAATCCAACACGAATATCTAAATGGTTTTCTAAAGCTGGTGGTGGATTGGGGCATGAACCAGGTGCTAAGGCGCTATCACAATTTTCTTTTGTTAATCGAGATACTTGTTGGGAGGAACTTGAGTGGAAGGGAAAACATGGGCAATCGCCAGCAGTGGTTGCTACAAAGCCCCATTACTTTCTTGATTTGGATGTCCAGGCAACTGTGGAGAATTTCCTTGAAAATGTCCCTGAATTTTGGTCCTCCAATGAGTTTTCTGAGTCACTTAAAGATGGTGAAATTCTGTTTGTTGACAGAAAATATTTTGTCGAATATTTTGTTGATCTGATGTATAAAGAGGATTCAAAAGATGTTTGGAAAGTTACAAGTGAGTTCCTGAAGGAGGAGTGTTTTTCTTCCTTATGCAAGCGCCTTCTTATTACTCTTGATGAGTCGGATTTATGTGATTTTCTTAAAATGCTTTTCAAGTATCTCAACCCTAGAATGGAGCAGAAGGATCTTATGGACTCATCTTATTTGTTTGAGGTTATACTTTCTAAGTGTGCGGATTTTAGAAGCTTTGATGAGATATTACTGTTAAATGCAGTTTTTAATCATGGACGCCAACTTTTACGACTTCTACGAGATGAAGAGGGCCACGAAGAACAAGCAAGAATTAAAGATATTGTTTCGAAGATCTGCACAATCCCAAGTGATGACAGTAGCTTGGGCCCAATAATCAAAGATTGCTTTAAAATGAAGAATATACAAGCATGCAAGTTGCTGGGGCTTCAGTCATGGGTTATTTATTACAGTTTATCAGAACAATGCCGGACTCATGATTCTTGGGAATCATTATTTTTGTGTAATGCAATAAGTTTCCGAACATCAGATAGATATTCATTTCTGGACAATCAAGGAGCCTATGAAGAAGGTGGTTCTGATTTGGATCGTAAAGCATCCAAAACAGTTAAGCACAAGAAAAAGCATAGCAGTAGAAGGAAAAGAAAAAAAAGGGACTTTGATCACAATGACAGCTATGACAATGAGGTGCTGGATTTGCAATCAAATGTTGGAAGTTGGTTTCTCTCAATTGATGAGTATTCTGCATCATGGAATATTGAGGATTTACCTGAATATGTTTCCAAGTATTGCTTATCTACATGGATGAAGTGGGTGCTTGAACAATGGGGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

508

Amino Acids

58.92

Weight (kDa)

5.88

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48340 AT5G48340 AT5G48340 AT5G48340
fragaria_vesca	FvH4_5g32260
malus_domestica	MD02G1270700.v1.1
prunus_persica	Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1
pyrus_communis	pycom02g23160
rosa_chinensis	RchiOBHm_Chr7g0228451
rosa_laevigata	RLG00000001563
rosa_multiflora	Rmu_sc0004041.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231130
rosa_rugosa	Rorug07G0249400 Rorug07G0249500.1 Rorug07G0249600
rosa_samantha	Rh7AG401900 Rh7BG382900 Rh7CG420900 Rh7DG398000
rosa_wichuraiana	Rw7G033410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	890
AclWI	GGATC	2 cut(s)	849, 1281
AcsI	RAATTY	5 cut(s)	52, 332, 556, 578, 624
AcuI	CTGAAG	2 cut(s)	743, 1100
AcyI	GRCGYC	1 cut(s)	946
AfiI	CCNNNNNNNGG	4 cut(s)	133, 238, 727, 829
AflII	CTTAAG	1 cut(s)	233
AgsI	TTSAA	6 cut(s)	8, 341, 566, 690, 811, 1508
AjnI	CCWGG	2 cut(s)	403, 540
AluBI	AGCT	5 cut(s)	256, 380, 903, 1050, 1362
AluI	AGCT	5 cut(s)	256, 380, 903, 1050, 1362
AlwI	GGATC	2 cut(s)	849, 1281
AoxI	GGCC	3 cut(s)	124, 979, 1054
ApaI	GGGCCC	1 cut(s)	1058
ApoI	RAATTY	5 cut(s)	52, 332, 556, 578, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
Asp700I	GAANNNNTTC	2 cut(s)	172, 242
AspLEI	GCGC	2 cut(s)	418, 756
AspS9I	GGNCC	4 cut(s)	585, 979, 1054, 1055
AsuHPI	GGTGA	1 cut(s)	632
AsuII	TTCGAA	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	585
BaeGI	GKGCMC	1 cut(s)	1058
BanII	GRGCYC	2 cut(s)	27, 1058
BccI	CCATC	2 cut(s)	35, 611
BceAI	ACGGC	1 cut(s)	111
BciT130I	CCWGG	2 cut(s)	405, 542
BclI	TGATCA	1 cut(s)	1348
BfaI	CTAG	1 cut(s)	825
BfoI	RGCGCY	2 cut(s)	419, 757
BfrI	CTTAAG	1 cut(s)	233
BglII	AGATCT	2 cut(s)	221, 1020
Bme1390I	CCNGG	2 cut(s)	405, 542
Bme18I	GGWCC	1 cut(s)	585
BmgT120I	GGNCC	4 cut(s)	585, 979, 1054, 1055
BmiI	GGNNCC	2 cut(s)	1056, 1246
BmrFI	CCNGG	2 cut(s)	405, 542
BmsI	GCATC	4 cut(s)	125, 257, 1292, 1442
BplI	GAGNNNNNCTC	2 cut(s)	60, 92
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	1016
BpuEI	CTTGAG	2 cut(s)	100, 485
BsaBI	GATNNNNATC	1 cut(s)	1272
BsaHI	GRCGYC	1 cut(s)	946
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 238, 727, 829
Bse8I	GATNNNNATC	1 cut(s)	1272
BseBI	CCWGG	2 cut(s)	405, 542
BseGI	GGATG	3 cut(s)	541, 1283, 1497
BseJI	GATNNNNATC	1 cut(s)	1272
BseLI	CCNNNNNNNGG	4 cut(s)	133, 238, 727, 829
BseMII	CTCAG	3 cut(s)	209, 266, 594
BseRI	GAGGAG	1 cut(s)	743
BseSI	GKGCMC	1 cut(s)	1058
BseYI	CCCAGC	1 cut(s)	1108
BsgI	GTGCAG	1 cut(s)	1009
BshFI	GGCC	3 cut(s)	126, 981, 1056
BsiSI	CCGG	1 cut(s)	1156
BslFI	GGGAC	2 cut(s)	557, 1355
BslI	CCNNNNNNNGG	4 cut(s)	133, 238, 727, 829
BsmFI	GGGAC	2 cut(s)	557, 1355
BsnI	GGCC	3 cut(s)	126, 981, 1056
Bsp119I	TTCGAA	1 cut(s)	1016
Bsp120I	GGGCCC	1 cut(s)	1054
Bsp1286I	GDGCHC	2 cut(s)	27, 1058
Bsp143I	GATC	6 cut(s)	221, 667, 841, 1020, 1273, 1348
BspACI	CCGC	1 cut(s)	890
BspANI	GGCC	3 cut(s)	126, 981, 1056
BspCNI	CTCAG	3 cut(s)	210, 265, 595
BspHI	TCATGA	1 cut(s)	1162
BspLI	GGNNCC	2 cut(s)	1056, 1246
BspPI	GGATC	2 cut(s)	849, 1281
BspT104I	TTCGAA	1 cut(s)	1016
BspTI	CTTAAG	1 cut(s)	233
BssMI	GATC	6 cut(s)	221, 667, 841, 1020, 1273, 1348
BssNI	GRCGYC	1 cut(s)	946
Bst2UI	CCWGG	2 cut(s)	405, 542
Bst4CI	ACNGT	6 cut(s)	144, 550, 921, 1046, 1139, 1294
Bst6I	CTCTTC	1 cut(s)	969
BstACI	GRCGYC	1 cut(s)	946
BstAFI	CTTAAG	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstBI	TTCGAA	1 cut(s)	1016
BstC8I	GCNNGC	3 cut(s)	495, 752, 1099
BstDEI	CTNAG	5 cut(s)	218, 252, 411, 603, 882
BstENI	CCTNNNNNAGG	2 cut(s)	236, 725
BstF5I	GGATG	3 cut(s)	541, 1283, 1497
BstH2I	RGCGCY	2 cut(s)	419, 757
BstHHI	GCGC	2 cut(s)	418, 756
BstKTI	GATC	6 cut(s)	224, 670, 844, 1023, 1276, 1351
BstMBI	GATC	6 cut(s)	221, 667, 841, 1020, 1273, 1348
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 1384
BstNI	CCWGG	2 cut(s)	405, 542
BstNSI	RCATGY	1 cut(s)	1101
BstSCI	CCNGG	2 cut(s)	403, 540
BstSLI	GKGCMC	1 cut(s)	1058
BstX2I	RGATCY	3 cut(s)	221, 841, 1020
BstYI	RGATCY	3 cut(s)	221, 841, 1020
BsuRI	GGCC	3 cut(s)	126, 981, 1056
BtsCI	GGATG	3 cut(s)	541, 1283, 1497
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	2 cut(s)	200, 504
Cac8I	GCNNGC	3 cut(s)	495, 752, 1099
CciI	TCATGA	1 cut(s)	1162
CfoI	GCGC	2 cut(s)	418, 756
Cfr13I	GGNCC	4 cut(s)	585, 979, 1054, 1055
CseI	GACGC	1 cut(s)	954
CsiI	ACCWGGT	1 cut(s)	403
CviAII	CATG	9 cut(s)	112, 398, 482, 941, 1098, 1122, 1163, 1437, 1488
DdeI	CTNAG	5 cut(s)	218, 252, 411, 603, 882
DpnI	GATC	6 cut(s)	223, 669, 843, 1022, 1275, 1350
DpnII	GATC	6 cut(s)	221, 667, 841, 1020, 1273, 1348
DraI	TTTAAA	1 cut(s)	1078
Eam1104I	CTCTTC	1 cut(s)	969
EarI	CTCTTC	1 cut(s)	969
Eco24I	GRGCYC	2 cut(s)	27, 1058
Eco47I	GGWCC	1 cut(s)	585
Eco57I	CTGAAG	2 cut(s)	743, 1100
EcoNI	CCTNNNNNAGG	2 cut(s)	236, 725
EcoRI	GAATTC	1 cut(s)	52
EcoRII	CCWGG	2 cut(s)	403, 540
EcoT38I	GRGCYC	2 cut(s)	27, 1058
FaeI	CATG	9 cut(s)	115, 401, 485, 944, 1101, 1125, 1166, 1440, 1491
FalI	AAGNNNNNCTT	4 cut(s)	227, 259, 1463, 1495
FaqI	GGGAC	2 cut(s)	557, 1355
FatI	CATG	9 cut(s)	111, 397, 481, 940, 1097, 1121, 1162, 1436, 1487
FbaI	TGATCA	1 cut(s)	1348
FokI	GGATG	3 cut(s)	548, 1270, 1504
FriOI	GRGCYC	2 cut(s)	27, 1058
FspBI	CTAG	1 cut(s)	825
GlaI	GCGC	2 cut(s)	417, 755
GsaI	CCCAGC	1 cut(s)	1112
GsuI	CTGGAG	1 cut(s)	141
HaeII	RGCGCY	2 cut(s)	419, 757
HaeIII	GGCC	3 cut(s)	126, 981, 1056
HapII	CCGG	1 cut(s)	1156
HgaI	GACGC	1 cut(s)	954
HhaI	GCGC	2 cut(s)	418, 756
Hin1I	GRCGYC	1 cut(s)	946
Hin1II	CATG	9 cut(s)	115, 401, 485, 944, 1101, 1125, 1166, 1440, 1491
Hin6I	GCGC	2 cut(s)	416, 754
HinP1I	GCGC	2 cut(s)	416, 754
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HindIII	AAGCTT	1 cut(s)	901
HinfI	GANTC	9 cut(s)	82, 92, 605, 686, 776, 851, 1159, 1166, 1175
HpaII	CCGG	1 cut(s)	1156
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	2 cut(s)	284, 637
Hpy188I	TCNGA	9 cut(s)	22, 133, 604, 672, 781, 1147, 1208, 1216, 1267
Hpy188III	TCNNGA	9 cut(s)	31, 79, 120, 443, 527, 721, 770, 1163, 1232
Hpy8I	GTNNAC	2 cut(s)	284, 637
HpyAV	CCTTC	8 cut(s)	232, 335, 466, 718, 767, 832, 1250, 1317
HpyCH4III	ACNGT	6 cut(s)	144, 550, 921, 1046, 1139, 1294
HpyCH4V	TGCA	7 cut(s)	750, 929, 1026, 1101, 1196, 1387, 1433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 1384
HpyF3I	CTNAG	5 cut(s)	218, 252, 411, 603, 882
Hsp92I	GRCGYC	1 cut(s)	946
Hsp92II	CATG	9 cut(s)	115, 401, 485, 944, 1101, 1125, 1166, 1440, 1491
HspAI	GCGC	2 cut(s)	416, 754
Ksp22I	TGATCA	1 cut(s)	1348
Kzo9I	GATC	6 cut(s)	221, 667, 841, 1020, 1273, 1348
LmnI	GCTCC	2 cut(s)	832, 1244
LweI	GCATC	4 cut(s)	125, 257, 1292, 1442
MabI	ACCWGGT	1 cut(s)	403
MaeI	CTAG	1 cut(s)	825
MaeIII	GTNAC	6 cut(s)	152, 185, 201, 317, 606, 706
MalI	GATC	6 cut(s)	223, 669, 843, 1022, 1275, 1350
MboI	GATC	6 cut(s)	221, 667, 841, 1020, 1273, 1348
MboII	GAAGA	6 cut(s)	732, 986, 998, 1030, 1096, 1265
MfeI	CAATTG	3 cut(s)	8, 86, 1416
MflI	RGATCY	3 cut(s)	221, 841, 1020
MhlI	GDGCHC	2 cut(s)	27, 1058
MlyI	GAGTC	5 cut(s)	91, 614, 785, 845, 1153
MmeI	TCCRAC	3 cut(s)	374, 759, 1378
MroXI	GAANNNNTTC	2 cut(s)	172, 242
MseI	TTAA	9 cut(s)	234, 438, 612, 798, 923, 936, 1002, 1077, 1296
MspCI	CTTAAG	1 cut(s)	233
MspI	CCGG	1 cut(s)	1156
MspR9I	CCNGG	2 cut(s)	405, 542
MunI	CAATTG	3 cut(s)	8, 86, 1416
MvaI	CCWGG	2 cut(s)	405, 542
MwoI	GCNNNNNNNGC	2 cut(s)	503, 1384
NdeII	GATC	6 cut(s)	221, 667, 841, 1020, 1273, 1348
NlaIII	CATG	9 cut(s)	115, 401, 485, 944, 1101, 1125, 1166, 1440, 1491
NlaIV	GGNNCC	2 cut(s)	1056, 1246
NmuCI	GTSAC	2 cut(s)	185, 606
NspI	RCATGY	1 cut(s)	1101
NspV	TTCGAA	1 cut(s)	1016
PaeI	GCATGC	1 cut(s)	1101
PagI	TCATGA	1 cut(s)	1162
PcsI	WCGNNNNNNNCGW	1 cut(s)	964
PdmI	GAANNNNTTC	2 cut(s)	172, 242
PfeI	GAWTC	4 cut(s)	92, 686, 1166, 1175
PleI	GAGTC	5 cut(s)	90, 613, 784, 845, 1153
PpsI	GAGTC	5 cut(s)	90, 613, 784, 845, 1153
Psp6I	CCWGG	2 cut(s)	403, 540
PspFI	CCCAGC	1 cut(s)	1108
PspGI	CCWGG	2 cut(s)	403, 540
PspN4I	GGNNCC	2 cut(s)	1056, 1246
PspOMI	GGGCCC	1 cut(s)	1054
PspPI	GGNCC	4 cut(s)	585, 979, 1054, 1055
PsuI	RGATCY	3 cut(s)	221, 841, 1020
SaqAI	TTAA	9 cut(s)	234, 438, 612, 798, 923, 936, 1002, 1077, 1296
Sau3AI	GATC	6 cut(s)	221, 667, 841, 1020, 1273, 1348
Sau96I	GGNCC	4 cut(s)	585, 979, 1054, 1055
SchI	GAGTC	5 cut(s)	91, 614, 785, 845, 1153
ScrFI	CCNGG	2 cut(s)	405, 542
SduI	GDGCHC	2 cut(s)	27, 1058
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	4 cut(s)	125, 257, 1292, 1442
SfuI	TTCGAA	1 cut(s)	1016
SinI	GGWCC	1 cut(s)	585
SmlI	CTYRAG	3 cut(s)	79, 233, 464
SmoI	CTYRAG	3 cut(s)	79, 233, 464
SphI	GCATGC	1 cut(s)	1101
SsiI	CCGC	1 cut(s)	890
SspI	AATATT	3 cut(s)	647, 659, 1444
SspMI	CTAG	1 cut(s)	825
StyD4I	CCNGG	2 cut(s)	403, 540
TaaI	ACNGT	6 cut(s)	144, 550, 921, 1046, 1139, 1294
TaqI	TCGA	4 cut(s)	139, 442, 654, 1016
TfiI	GAWTC	4 cut(s)	92, 686, 1166, 1175
Tru1I	TTAA	9 cut(s)	234, 438, 612, 798, 923, 936, 1002, 1077, 1296
Tru9I	TTAA	9 cut(s)	234, 438, 612, 798, 923, 936, 1002, 1077, 1296
TscAI	CASTG	2 cut(s)	200, 504
TseFI	GTSAC	2 cut(s)	185, 606
Tsp45I	GTSAC	2 cut(s)	185, 606
TspDTI	ATGAA	7 cut(s)	100, 414, 987, 1097, 1215, 1266, 1508
TspRI	CASTG	2 cut(s)	200, 504
Vha464I	CTTAAG	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	585
XagI	CCTNNNNNAGG	2 cut(s)	236, 725
XapI	RAATTY	5 cut(s)	52, 332, 556, 578, 624
XceI	RCATGY	1 cut(s)	1101
XmnI	GAANNNNTTC	2 cut(s)	172, 242
XspI	CTAG	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.