Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006189

Physical Location & Seq

Genomic Coordinates Reverse (-)

21309523 .. 21312736

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g23160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGATTGCCCATGAATCCAACATTTATTTTTCAAGATCCTTAGCAAAATGTTATCCTTATATCAGTTTAAATGGAGATTATTATATTTTTTTATGTGAAATTTCTATTATGTTAATTGTTTTTGCAATTGTATGGGTTCACATCTGTGCTCTGGTGATTCTGGTAATATATGTCGTTGGAATTCCTATTCTCTCTTTAAGTAGAAGTTTGACTGCTATACATGAAGTTCATAGTGATTTTCTGTTCTTGAACTTTTTGATGTATATTGATCATGCTATTTGTTTTATGCAGGACTTTGTTTTTGTGGAATCATTTAATTGGGATAAGCTGCTTGAGCACATTTATAATTTTGGATATATAATGCTTCAATTGTTTCTATCAGAGCCCATCTGGAATGACAATGGAGATGAGAATTCTGCCATGATTAGAGTATCTCTCTTGAGTCAATTGGAATCTACTATTTGGTTGTTCATGGCATCTGGAGGCCGTTCAGAGGCTCGACTGTGGCTTTGTAACACGATAGGCAGAATAAGTTCTCTCACTCGTCACAATCAGTGCGAGTTACTTTTGGACTTACTGAGATCTAAACCCCTTAAGAAGGGATTAGCATCTCAGCTTGTAGAAATGATATTTGAGAATAGTCCACATAAAGCAGGGTCTATCATATCCAAGCGAAGTTACACACTAAAGAAATTTTTTGAAGGAAATCCAACACGAATATCTAAATGGTTTTCTAAAGCTGGTGGTGGATTGGGGCATGAACCAGGTGCTAAGGCGCTATCACAATTTTCTTTTGTTAATCGAGATACTTGTTGGGAGGAACTTGAGTGGAAGGGAAAACATGGGCAATCGCCAGCAGTGGTTGCTACAAAACCCCATTACTTTCTTGATTTGGATGTCCAGGCAACTGTGGAGAATTTCCTTGAAAATGTCCCTGAATTTTGGTCCTCCAATGAGTTTTCCGAGTCACTTAAAGATGGTGAAATTCTGTTTGTTGACAGAAAATATTTTGTGGAATATTTTGTTGATCTGATGTATAAAGAGGATTCAAAAGATGTTTGGAAAGTTACAAGTGAGTTCCTGAAGGAGGAGTGTTTTTCTTCCTTATGCAAGCGCCTTCTTATTACTCTTGATGAGTCGGATTTATGTGATTTTCTTAAAATGCTTTACAAGTATCTCAACACTAGAATGGAGCAGAAGGATCTTATGGACTCATCTTATTTGTTTGAGGTTATACTTTCTAAGTGTGCAGATTTTAGAAGCTTTGATGAGATATTACTGTTAAATGCAGTTTTTAATCATGGACGCCAACTTTTACGACTTCTACGAGATGAAGAGGGCCACGAAGAACAAGCAAGAATTAAAGATATTGTTTCGAAGATCTGCACAATCCCAAGTGATAACAGTAGCTTGGGCCCAATAATCAAAGATTGCTTTAAAATGAAGAATATACAAGCATTAAAGTTGCTGGGGCTTCAGTCATGGGTTATTTATTACAGTTTATCAGAACAATGCCGGACTCGTGATTCTTGGGAATCATTATTTTTGTGTAATGCAATAAGTTTCCGAACATCAGATAGATATTCATTTCTAGACGATCAAGGAGCCTACGAAGAAGGTGGTTCTGATTTGGATCATAAAGCATCCAAAACAGTTAAGCACAAGAAAAAGCATAGTAGTAGAAGGAAAAGAAAAACAAGGGGCTTTGATCACAATGACAGCTATGACAATGAGGTGCTGGATTTGCAATCAAATGTTGGAAGTTGGTTTCTCTCAATTGATGAGTATTCTGCATCATGGAATATTGAGGATTTACCTGAATATCTTTCCAAGTATTGCTTGTCGACATGGATGAAGTGGGTGCTTGAAGAATGGGGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

628

Amino Acids

72.94

Weight (kDa)

5.6

Isoelectric Point (pI)

45.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48340 AT5G48340 AT5G48340 AT5G48340
fragaria_vesca	FvH4_5g32260
malus_domestica	MD02G1270700.v1.1
prunus_persica	Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1
pyrus_communis	pycom02g23160
rosa_chinensis	RchiOBHm_Chr7g0228451
rosa_laevigata	RLG00000001563
rosa_multiflora	Rmu_sc0004041.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231130
rosa_rugosa	Rorug07G0249400 Rorug07G0249500.1 Rorug07G0249600
rosa_samantha	Rh7AG401900 Rh7BG382900 Rh7CG420900 Rh7DG398000
rosa_wichuraiana	Rw7G033410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	1844
AclWI	GGATC	3 cut(s)	30, 1209, 1641
AcsI	RAATTY	7 cut(s)	99, 180, 412, 692, 916, 938, 984
AcuI	CTGAAG	2 cut(s)	1103, 1460
AcyI	GRCGYC	1 cut(s)	1306
AfiI	CCNNNNNNNGG	3 cut(s)	493, 598, 1087
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	7 cut(s)	33, 250, 368, 701, 926, 1050, 1868
AjnI	CCWGG	2 cut(s)	763, 900
AleI	CACNNNNGTG	1 cut(s)	144
AluBI	AGCT	6 cut(s)	328, 616, 740, 1263, 1410, 1722
AluI	AGCT	6 cut(s)	328, 616, 740, 1263, 1410, 1722
Alw21I	GWGCWC	2 cut(s)	151, 339
AlwI	GGATC	3 cut(s)	30, 1209, 1641
AoxI	GGCC	3 cut(s)	484, 1339, 1414
ApaI	GGGCCC	1 cut(s)	1418
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	7 cut(s)	99, 180, 412, 692, 916, 938, 984
ArsI	GACNNNNNNTTYG	4 cut(s)	284, 316, 492, 524
Asp700I	GAANNNNTTC	1 cut(s)	532
AspLEI	GCGC	2 cut(s)	778, 1116
AspS9I	GGNCC	4 cut(s)	945, 1339, 1414, 1415
AsuHPI	GGTGA	2 cut(s)	166, 992
AsuII	TTCGAA	1 cut(s)	1376
AvaII	GGWCC	1 cut(s)	945
BaeGI	GKGCMC	1 cut(s)	1418
BanII	GRGCYC	2 cut(s)	387, 1418
BauI	CACGAG	1 cut(s)	1521
Bbv12I	GWGCWC	2 cut(s)	151, 339
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	2 cut(s)	395, 971
BceAI	ACGGC	1 cut(s)	471
BciT130I	CCWGG	2 cut(s)	765, 902
BclI	TGATCA	2 cut(s)	268, 1708
BfaI	CTAG	2 cut(s)	1185, 1592
BfoI	RGCGCY	2 cut(s)	779, 1117
BfrI	CTTAAG	1 cut(s)	593
BglII	AGATCT	2 cut(s)	581, 1380
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	2 cut(s)	765, 902
Bme18I	GGWCC	1 cut(s)	945
BmgT120I	GGNCC	4 cut(s)	945, 1339, 1414, 1415
BmiI	GGNNCC	2 cut(s)	1416, 1606
BmrFI	CCNGG	2 cut(s)	765, 902
BmsI	GCATC	4 cut(s)	485, 617, 1652, 1802
BplI	GAGNNNNNCTC	2 cut(s)	420, 452
BpmI	CTGGAG	1 cut(s)	501
Bpu10I	CCTNAGC	2 cut(s)	40, 771
Bpu14I	TTCGAA	1 cut(s)	1376
BpuEI	CTTGAG	3 cut(s)	353, 460, 845
BsaBI	GATNNNNATC	2 cut(s)	607, 1632
BsaHI	GRCGYC	1 cut(s)	1306
Bsc4I	CCNNNNNNNGG	3 cut(s)	493, 598, 1087
Bse8I	GATNNNNATC	2 cut(s)	607, 1632
BseBI	CCWGG	2 cut(s)	765, 902
BseGI	GGATG	3 cut(s)	901, 1643, 1857
BseJI	GATNNNNATC	2 cut(s)	607, 1632
BseLI	CCNNNNNNNGG	3 cut(s)	493, 598, 1087
BseMII	CTCAG	2 cut(s)	569, 626
BseRI	GAGGAG	1 cut(s)	1103
BseSI	GKGCMC	1 cut(s)	1418
BseXI	GCAGC	1 cut(s)	315
BseYI	CCCAGC	1 cut(s)	1468
BsgI	GTGCAG	2 cut(s)	1269, 1369
BshFI	GGCC	3 cut(s)	486, 1341, 1416
BsiHKAI	GWGCWC	2 cut(s)	151, 339
BsiSI	CCGG	1 cut(s)	1516
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	3 cut(s)	493, 598, 1087
BsmFI	GGGAC	1 cut(s)	917
BsnI	GGCC	3 cut(s)	486, 1341, 1416
Bsp119I	TTCGAA	1 cut(s)	1376
Bsp120I	GGGCCC	1 cut(s)	1414
Bsp1286I	GDGCHC	4 cut(s)	151, 339, 387, 1418
Bsp143I	GATC	9 cut(s)	35, 268, 581, 1027, 1201, 1380, 1597, 1633, 1708
BspANI	GGCC	3 cut(s)	486, 1341, 1416
BspCNI	CTCAG	2 cut(s)	570, 625
BspLI	GGNNCC	2 cut(s)	1416, 1606
BspPI	GGATC	3 cut(s)	30, 1209, 1641
BspT104I	TTCGAA	1 cut(s)	1376
BspTI	CTTAAG	1 cut(s)	593
BssMI	GATC	9 cut(s)	35, 268, 581, 1027, 1201, 1380, 1597, 1633, 1708
BssNI	GRCGYC	1 cut(s)	1306
BssSI	CACGAG	1 cut(s)	1521
Bst2BI	CACGAG	1 cut(s)	1521
Bst2UI	CCWGG	2 cut(s)	765, 902
Bst4CI	ACNGT	6 cut(s)	504, 910, 1281, 1406, 1499, 1654
Bst6I	CTCTTC	1 cut(s)	1329
BstACI	GRCGYC	1 cut(s)	1306
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	863
BstBI	TTCGAA	1 cut(s)	1376
BstC8I	GCNNGC	2 cut(s)	855, 1112
BstDEI	CTNAG	5 cut(s)	40, 578, 612, 771, 1242
BstENI	CCTNNNNNAGG	2 cut(s)	596, 1085
BstF5I	GGATG	3 cut(s)	901, 1643, 1857
BstH2I	RGCGCY	2 cut(s)	779, 1117
BstHHI	GCGC	2 cut(s)	778, 1116
BstKTI	GATC	9 cut(s)	38, 271, 584, 1030, 1204, 1383, 1600, 1636, 1711
BstMBI	GATC	9 cut(s)	35, 268, 581, 1027, 1201, 1380, 1597, 1633, 1708
BstMWI	GCNNNNNNNGC	3 cut(s)	334, 863, 1744
BstNI	CCWGG	2 cut(s)	765, 902
BstSCI	CCNGG	2 cut(s)	763, 900
BstSLI	GKGCMC	1 cut(s)	1418
BstV1I	GCAGC	1 cut(s)	315
BstX2I	RGATCY	4 cut(s)	35, 581, 1201, 1380
BstYI	RGATCY	4 cut(s)	35, 581, 1201, 1380
BsuRI	GGCC	3 cut(s)	486, 1341, 1416
BtsCI	GGATG	3 cut(s)	901, 1643, 1857
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	2 cut(s)	560, 864
Cac8I	GCNNGC	2 cut(s)	855, 1112
CfoI	GCGC	2 cut(s)	778, 1116
Cfr13I	GGNCC	4 cut(s)	945, 1339, 1414, 1415
CseI	GACGC	1 cut(s)	1314
CsiI	ACCWGGT	1 cut(s)	763
DdeI	CTNAG	5 cut(s)	40, 578, 612, 771, 1242
DpnI	GATC	9 cut(s)	37, 270, 583, 1029, 1203, 1382, 1599, 1635, 1710
DpnII	GATC	9 cut(s)	35, 268, 581, 1027, 1201, 1380, 1597, 1633, 1708
DraI	TTTAAA	2 cut(s)	69, 1438
Eam1104I	CTCTTC	1 cut(s)	1329
EarI	CTCTTC	1 cut(s)	1329
Eco24I	GRGCYC	2 cut(s)	387, 1418
Eco47I	GGWCC	1 cut(s)	945
Eco57I	CTGAAG	2 cut(s)	1103, 1460
EcoNI	CCTNNNNNAGG	2 cut(s)	596, 1085
EcoRI	GAATTC	2 cut(s)	180, 412
EcoRII	CCWGG	2 cut(s)	763, 900
EcoT38I	GRGCYC	2 cut(s)	387, 1418
FalI	AAGNNNNNCTT	2 cut(s)	1823, 1855
FaqI	GGGAC	1 cut(s)	917
FbaI	TGATCA	2 cut(s)	268, 1708
FblI	GTMKAC	1 cut(s)	1844
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	3 cut(s)	908, 1630, 1864
FriOI	GRGCYC	2 cut(s)	387, 1418
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	2 cut(s)	1185, 1592
GlaI	GCGC	2 cut(s)	777, 1115
GluI	GCNGC	1 cut(s)	329
GsaI	CCCAGC	1 cut(s)	1472
GsuI	CTGGAG	1 cut(s)	501
HaeII	RGCGCY	2 cut(s)	779, 1117
HaeIII	GGCC	3 cut(s)	486, 1341, 1416
HapII	CCGG	1 cut(s)	1516
HgaI	GACGC	1 cut(s)	1314
HhaI	GCGC	2 cut(s)	778, 1116
Hin1I	GRCGYC	1 cut(s)	1306
Hin6I	GCGC	2 cut(s)	776, 1114
HinP1I	GCGC	2 cut(s)	776, 1114
HincII	GTYRAC	2 cut(s)	997, 1845
HindII	GTYRAC	2 cut(s)	997, 1845
HindIII	AAGCTT	1 cut(s)	1261
HpaII	CCGG	1 cut(s)	1516
HphI	GGTGA	2 cut(s)	166, 992
Hpy166II	GTNNAC	4 cut(s)	139, 644, 997, 1845
Hpy188I	TCNGA	9 cut(s)	382, 493, 964, 1032, 1141, 1507, 1568, 1576, 1627
Hpy8I	GTNNAC	4 cut(s)	139, 644, 997, 1845
HpyAV	CCTTC	8 cut(s)	592, 695, 826, 1078, 1127, 1192, 1610, 1677
HpyCH4III	ACNGT	6 cut(s)	504, 910, 1281, 1406, 1499, 1654
HpyCH4V	TGCA	9 cut(s)	125, 289, 1110, 1250, 1289, 1386, 1556, 1747, 1793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	334, 863, 1744
HpyF3I	CTNAG	5 cut(s)	40, 578, 612, 771, 1242
Hsp92I	GRCGYC	1 cut(s)	1306
HspAI	GCGC	2 cut(s)	776, 1114
Ksp22I	TGATCA	2 cut(s)	268, 1708
Kzo9I	GATC	9 cut(s)	35, 268, 581, 1027, 1201, 1380, 1597, 1633, 1708
LmnI	GCTCC	2 cut(s)	1192, 1604
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	4 cut(s)	485, 617, 1652, 1802
MabI	ACCWGGT	1 cut(s)	763
MaeI	CTAG	2 cut(s)	1185, 1592
MaeIII	GTNAC	6 cut(s)	512, 545, 561, 677, 966, 1066
MalI	GATC	9 cut(s)	37, 270, 583, 1029, 1203, 1382, 1599, 1635, 1710
MboI	GATC	9 cut(s)	35, 268, 581, 1027, 1201, 1380, 1597, 1633, 1708
MboII	GAAGA	7 cut(s)	1092, 1346, 1358, 1390, 1456, 1625, 1880
MfeI	CAATTG	4 cut(s)	126, 368, 446, 1776
MflI	RGATCY	4 cut(s)	35, 581, 1201, 1380
MhlI	GDGCHC	4 cut(s)	151, 339, 387, 1418
MlyI	GAGTC	5 cut(s)	451, 974, 1145, 1205, 1513
MmeI	TCCRAC	5 cut(s)	42, 157, 734, 1119, 1738
MroXI	GAANNNNTTC	1 cut(s)	532
MslI	CAYNNNNRTG	2 cut(s)	144, 1187
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	1516
MspR9I	CCNGG	2 cut(s)	765, 902
MunI	CAATTG	4 cut(s)	126, 368, 446, 1776
MvaI	CCWGG	2 cut(s)	765, 902
MwoI	GCNNNNNNNGC	3 cut(s)	334, 863, 1744
NdeII	GATC	9 cut(s)	35, 268, 581, 1027, 1201, 1380, 1597, 1633, 1708
NlaIV	GGNNCC	2 cut(s)	1416, 1606
NmuCI	GTSAC	2 cut(s)	545, 966
NspV	TTCGAA	1 cut(s)	1376
OliI	CACNNNNGTG	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	1324
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	7 cut(s)	14, 157, 308, 452, 1046, 1526, 1535
PkrI	GCNGC	1 cut(s)	330
PleI	GAGTC	5 cut(s)	450, 973, 1144, 1205, 1513
PpsI	GAGTC	5 cut(s)	450, 973, 1144, 1205, 1513
PsiI	TTATAA	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	763, 900
PspFI	CCCAGC	1 cut(s)	1468
PspGI	CCWGG	2 cut(s)	763, 900
PspN4I	GGNNCC	2 cut(s)	1416, 1606
PspOMI	GGGCCC	1 cut(s)	1414
PspPI	GGNCC	4 cut(s)	945, 1339, 1414, 1415
PsuI	RGATCY	4 cut(s)	35, 581, 1201, 1380
RseI	CAYNNNNRTG	2 cut(s)	144, 1187
SalI	GTCGAC	1 cut(s)	1843
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	9 cut(s)	35, 268, 581, 1027, 1201, 1380, 1597, 1633, 1708
Sau96I	GGNCC	4 cut(s)	945, 1339, 1414, 1415
SchI	GAGTC	5 cut(s)	451, 974, 1145, 1205, 1513
ScrFI	CCNGG	2 cut(s)	765, 902
SduI	GDGCHC	4 cut(s)	151, 339, 387, 1418
SexAI	ACCWGGT	1 cut(s)	763
SfaNI	GCATC	4 cut(s)	485, 617, 1652, 1802
SfuI	TTCGAA	1 cut(s)	1376
SinI	GGWCC	1 cut(s)	945
SmiMI	CAYNNNNRTG	2 cut(s)	144, 1187
SmlI	CTYRAG	4 cut(s)	332, 439, 593, 824
SmoI	CTYRAG	4 cut(s)	332, 439, 593, 824
SspI	AATATT	3 cut(s)	1007, 1019, 1804
SspMI	CTAG	2 cut(s)	1185, 1592
StyD4I	CCNGG	2 cut(s)	763, 900
TaaI	ACNGT	6 cut(s)	504, 910, 1281, 1406, 1499, 1654
TaqI	TCGA	4 cut(s)	499, 802, 1376, 1844
TfiI	GAWTC	7 cut(s)	14, 157, 308, 452, 1046, 1526, 1535
TscAI	CASTG	2 cut(s)	560, 864
TseFI	GTSAC	2 cut(s)	545, 966
TseI	GCWGC	1 cut(s)	328
Tsp45I	GTSAC	2 cut(s)	545, 966
TspDTI	ATGAA	9 cut(s)	27, 218, 237, 460, 774, 1347, 1457, 1575, 1868
TspRI	CASTG	2 cut(s)	560, 864
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	945
XagI	CCTNNNNNAGG	2 cut(s)	596, 1085
XapI	RAATTY	7 cut(s)	99, 180, 412, 692, 916, 938, 984
XbaI	TCTAGA	1 cut(s)	1591
XmiI	GTMKAC	1 cut(s)	1844
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	2 cut(s)	1185, 1592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.