Rmu_sc0004041.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004041.1
Physical Location & Seq
Forward (+)
1 .. 2444
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004041.1_g000001.1.cds

Sequence Viewer

Length: 1413 bp
cgatcagaggctagactatggctttgcaacactatagctagcataagttctatcactcatcatcatcaacgtgagttatttatcgacttattgagatctaagccgctgaagaagcgcttagcaactcagctcctgcacatgatatttgataataggccacaagaggcagggtctgtcatatccaagagaagttatgcacttaggaaattttttcaaggaaacccaacacgaatatctcagtggttttccaaaactggttctggattgaggcagggacaaggtgctaatgcgttatcccaatttgcttttgttaatcgagataattgttgggaggagcttgagtggaagggaaaacatgggcaatcaccggcggtagttgctacaaaaccccattactttcttgatttggacgtccagcaaaccgtagagaatttccttgaaaatgtgcctgaattttggtcatccaatgagttttctgagtcacttaaaggtggagaaattttgatcattgatagaaacttttttgttctatattttctggatttgatgtacaaagaagatgccagagatgtatgggaagttacgaatgagttcctggaggaggagcacttttcttccctgtgtaaacatcttcttattactcttgagaagtcagacttatgtgattttcttaaaatgcttcataaacatgtcaagcctaaagtagaatgcaaagatcctatggactcctcttatttgtttgaagttgtagtatccaggtgcagtgattgtgggtgctttgatcagatattactgttaaatgcagtttttaactatggccgccagcttctacgactcttacgagatgaaggagcgcctgaggatcaagcaaaactacaagatattgtgtccgagatttgtgcaatcccaggcaatgaaaatagcatggcaccaataattaaagggggctctaaactgaagactatagaagcatttaaattgatggggcttcagtcatgggtcctcttttttagtttatcagaaaaatgccagactcctcagtcttgggaatcattatttgttgataatgaaataagttttcgaaagtatgataaatattcatttcttcatgataatgaagttgccggagaaggtggttctgatttggattatagagggtccaaaaaagttaagcgaaggaaaaagactagtagtagaaggaaaagaagaagggactttgatcatgatgacaatgagttgctggattccgatactacaaataataggctggatttgcattctagtgtgggaagttggttgctctcacttgatgggtattctgcatcatggaacagtgcggatttacccgaatatctttccaagtattgcttgtctacatggatgaagtgggccttagcacagtgggatcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

470

Amino Acids

54.41

Weight (kDa)

6.27

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1039
AatII GACGTC 1 cut(s) 414
AccB1I GGYRCC 1 cut(s) 928
AccI GTMKAC 1 cut(s) 1373
AciI CCGC 4 cut(s) 104, 371, 820, 1337
AclWI GGATC 2 cut(s) 710, 870
AcoI YGGCCR 1 cut(s) 817
AcsI RAATTY 4 cut(s) 206, 430, 452, 498
AcuI CTGAAG 3 cut(s) 128, 974, 977
AcyI GRCGYC 1 cut(s) 411
AfaI GTAC 1 cut(s) 551
AfeI AGCGCT 1 cut(s) 116
AfiI CCNNNNNNNGG 1 cut(s) 601
AflIII ACRYGT 1 cut(s) 688
AgsI TTSAA 3 cut(s) 215, 440, 743
AhlI ACTAGT 1 cut(s) 1187
AjnI CCWGG 3 cut(s) 594, 755, 907
AluBI AGCT 4 cut(s) 38, 130, 337, 826
AluI AGCT 4 cut(s) 38, 130, 337, 826
Alw21I GWGCWC 1 cut(s) 609
AlwI GGATC 2 cut(s) 710, 870
AlwNI CAGNNNCTG 2 cut(s) 133, 173
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 3 cut(s) 155, 817, 1389
ApoI RAATTY 4 cut(s) 206, 430, 452, 498
ArsI GACNNNNNNTTYG 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 590
AspLEI GCGC 2 cut(s) 117, 856
AspS9I GGNCC 3 cut(s) 1000, 1158, 1389
AsuHPI GGTGA 1 cut(s) 357
AsuII TTCGAA 1 cut(s) 1081
AsuNHI GCTAGC 1 cut(s) 38
AvaII GGWCC 2 cut(s) 1000, 1158
AxyI CCTNAGG 1 cut(s) 858
BanI GGYRCC 1 cut(s) 928
BanII GRGCYC 1 cut(s) 950
BbsI GAAGAC 1 cut(s) 965
Bbv12I GWGCWC 1 cut(s) 609
BccI CCATC 2 cut(s) 976, 1304
BcgI CGANNNNNNTGC 2 cut(s) 881, 915
BciT130I CCWGG 3 cut(s) 596, 757, 909
BciVI GTATCC 1 cut(s) 763
BclI TGATCA 3 cut(s) 504, 781, 1219
BcuI ACTAGT 1 cut(s) 1187
BfaI CTAG 4 cut(s) 12, 39, 1188, 1281
BfmI CTRYAG 2 cut(s) 33, 963
BfoI RGCGCY 2 cut(s) 118, 857
BfuI GTATCC 1 cut(s) 763
BglII AGATCT 1 cut(s) 95
BisI GCNGC 2 cut(s) 104, 820
BlpI GCTNAGC 1 cut(s) 118
BlsI GCNGC 2 cut(s) 105, 821
Bme1390I CCNGG 3 cut(s) 596, 757, 909
Bme18I GGWCC 2 cut(s) 1000, 1158
BmgT120I GGNCC 3 cut(s) 1000, 1158, 1389
BmiI GGNNCC 3 cut(s) 930, 1001, 1159
BmrFI CCNGG 3 cut(s) 596, 757, 909
BmsI GCATC 2 cut(s) 550, 1331
BmtI GCTAGC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 965
BpmI CTGGAG 1 cut(s) 617
Bpu10I CCTNAGC 1 cut(s) 1393
Bpu1102I GCTNAGC 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 1081
BpuEI CTTGAG 2 cut(s) 359, 665
BsaHI GRCGYC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 907
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 1 cut(s) 601
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 858
Bse3DI GCAATG 1 cut(s) 919
BseBI CCWGG 3 cut(s) 596, 757, 909
BseDI CCNNGG 1 cut(s) 907
BseGI GGATG 2 cut(s) 461, 1386
BseLI CCNNNNNNNGG 1 cut(s) 601
BseMI GCAATG 1 cut(s) 919
BseMII CTCAG 5 cut(s) 140, 251, 468, 849, 1052
BseNI ACTGG 1 cut(s) 259
BseRI GAGGAG 5 cut(s) 347, 614, 617, 718, 1026
BsgI GTGCAG 2 cut(s) 119, 781
BshFI GGCC 3 cut(s) 157, 819, 1391
BshNI GGYRCC 1 cut(s) 928
BsiHKAI GWGCWC 1 cut(s) 609
BsiSI CCGG 2 cut(s) 368, 1125
BslFI GGGAC 2 cut(s) 288, 1226
BslI CCNNNNNNNGG 1 cut(s) 601
BsmFI GGGAC 2 cut(s) 288, 1226
BsmI GAATGC 2 cut(s) 713, 1276
BsnI GGCC 3 cut(s) 157, 819, 1391
Bsp119I TTCGAA 1 cut(s) 1081
Bsp1286I GDGCHC 2 cut(s) 609, 950
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 8 cut(s) 2, 95, 504, 715, 781, 862, 1219, 1405
Bsp1720I GCTNAGC 1 cut(s) 118
BspACI CCGC 4 cut(s) 104, 371, 820, 1337
BspANI GGCC 3 cut(s) 157, 819, 1391
BspCNI CTCAG 5 cut(s) 139, 250, 469, 850, 1051
BspHI TCATGA 2 cut(s) 1108, 1222
BspLI GGNNCC 3 cut(s) 930, 1001, 1159
BspOI GCTAGC 1 cut(s) 42
BspPI GGATC 2 cut(s) 710, 870
BspT104I TTCGAA 1 cut(s) 1081
BspT107I GGYRCC 1 cut(s) 928
BsrDI GCAATG 1 cut(s) 919
BsrFI RCCGGY 1 cut(s) 367
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 907
BssMI GATC 8 cut(s) 2, 95, 504, 715, 781, 862, 1219, 1405
BssNI GRCGYC 1 cut(s) 411
Bst2UI CCWGG 3 cut(s) 596, 757, 909
Bst4CI ACNGT 4 cut(s) 424, 795, 1334, 1401
BstACI GRCGYC 1 cut(s) 411
BstAUI TGTACA 1 cut(s) 549
BstBI TTCGAA 1 cut(s) 1081
BstC8I GCNNGC 2 cut(s) 40, 824
BstDEI CTNAG 9 cut(s) 99, 118, 126, 200, 237, 477, 858, 1038, 1393
BstENI CCTNNNNNAGG 1 cut(s) 599
BstF5I GGATG 2 cut(s) 461, 1386
BstH2I RGCGCY 2 cut(s) 118, 857
BstHHI GCGC 2 cut(s) 117, 856
BstKTI GATC 8 cut(s) 5, 98, 507, 718, 784, 865, 1222, 1408
BstMBI GATC 8 cut(s) 2, 95, 504, 715, 781, 862, 1219, 1405
BstMWI GCNNNNNNNGC 3 cut(s) 112, 377, 1273
BstNI CCWGG 3 cut(s) 596, 757, 909
BstNSI RCATGY 1 cut(s) 692
BstSCI CCNGG 3 cut(s) 594, 755, 907
BstSFI CTRYAG 2 cut(s) 33, 963
BstV2I GAAGAC 1 cut(s) 965
BstX2I RGATCY 2 cut(s) 95, 715
BstYI RGATCY 2 cut(s) 95, 715
Bsu36I CCTNAGG 1 cut(s) 858
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 3 cut(s) 157, 819, 1391
BtsCI GGATG 2 cut(s) 461, 1386
BtsI GCAGTG 1 cut(s) 769
BtsIMutI CAGTG 4 cut(s) 245, 769, 1339, 1406
Cac8I GCNNGC 2 cut(s) 40, 824
CaiI CAGNNNCTG 2 cut(s) 133, 173
CciI TCATGA 2 cut(s) 1108, 1222
CfoI GCGC 2 cut(s) 117, 856
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 3 cut(s) 1000, 1158, 1389
Csp6I GTAC 1 cut(s) 550
CviAII CATG 9 cut(s) 139, 356, 689, 925, 996, 1109, 1223, 1326, 1377
CviQI GTAC 1 cut(s) 550
DdeI CTNAG 9 cut(s) 99, 118, 126, 200, 237, 477, 858, 1038, 1393
DpnI GATC 8 cut(s) 4, 97, 506, 717, 783, 864, 1221, 1407
DpnII GATC 8 cut(s) 2, 95, 504, 715, 781, 862, 1219, 1405
DraI TTTAAA 1 cut(s) 976
DrdI GACNNNNNNGTC 1 cut(s) 1039
DseDI GACNNNNNNGTC 1 cut(s) 1039
EaeI YGGCCR 1 cut(s) 817
Eco24I GRGCYC 1 cut(s) 950
Eco47I GGWCC 2 cut(s) 1000, 1158
Eco47III AGCGCT 1 cut(s) 116
Eco57I CTGAAG 3 cut(s) 128, 974, 977
Eco81I CCTNAGG 1 cut(s) 858
EcoNI CCTNNNNNAGG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 1000
EcoRII CCWGG 3 cut(s) 594, 755, 907
EcoT38I GRGCYC 1 cut(s) 950
FaeI CATG 9 cut(s) 142, 359, 692, 928, 999, 1112, 1226, 1329, 1380
FalI AAGNNNNNCTT 8 cut(s) 101, 133, 641, 673, 1352, 1384, 1376, 1408
FaqI GGGAC 2 cut(s) 288, 1226
FatI CATG 9 cut(s) 138, 355, 688, 924, 995, 1108, 1222, 1325, 1376
FbaI TGATCA 3 cut(s) 504, 781, 1219
FblI GTMKAC 1 cut(s) 1373
Fnu4HI GCNGC 2 cut(s) 104, 820
FokI GGATG 2 cut(s) 448, 1393
FriOI GRGCYC 1 cut(s) 950
Fsp4HI GCNGC 2 cut(s) 104, 820
FspBI CTAG 4 cut(s) 12, 39, 1188, 1281
GlaI GCGC 2 cut(s) 116, 855
GluI GCNGC 2 cut(s) 104, 820
GsuI CTGGAG 1 cut(s) 617
HaeII RGCGCY 2 cut(s) 118, 857
HaeIII GGCC 3 cut(s) 157, 819, 1391
HapII CCGG 2 cut(s) 368, 1125
HhaI GCGC 2 cut(s) 117, 856
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 9 cut(s) 142, 359, 692, 928, 999, 1112, 1226, 1329, 1380
Hin6I GCGC 2 cut(s) 115, 854
HinP1I GCGC 2 cut(s) 115, 854
HinfI GANTC 6 cut(s) 479, 725, 834, 1033, 1049, 1244
HpaII CCGG 2 cut(s) 368, 1125
HphI GGTGA 1 cut(s) 357
Hpy166II GTNNAC 2 cut(s) 626, 1374
Hpy188I TCNGA 8 cut(s) 7, 478, 655, 786, 892, 1021, 1141, 1249
Hpy188III TCNNGA 7 cut(s) 261, 317, 401, 539, 644, 1109, 1223
Hpy8I GTNNAC 2 cut(s) 626, 1374
HpyAV CCTTC 6 cut(s) 340, 842, 1124, 1170, 1191, 1203
HpyCH4III ACNGT 4 cut(s) 424, 795, 1334, 1401
HpyCH4IV ACGT 2 cut(s) 70, 411
HpyCH4V TGCA 9 cut(s) 27, 136, 197, 711, 762, 803, 902, 1276, 1322
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 377, 1273
HpyF3I CTNAG 9 cut(s) 99, 118, 126, 200, 237, 477, 858, 1038, 1393
HpySE526I ACGT 2 cut(s) 70, 411
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 9 cut(s) 142, 359, 692, 928, 999, 1112, 1226, 1329, 1380
HspAI GCGC 2 cut(s) 115, 854
Ksp22I TGATCA 3 cut(s) 504, 781, 1219
Kzo9I GATC 8 cut(s) 2, 95, 504, 715, 781, 862, 1219, 1405
LmnI GCTCC 4 cut(s) 135, 334, 604, 851
LweI GCATC 2 cut(s) 550, 1331
MaeI CTAG 4 cut(s) 12, 39, 1188, 1281
MaeII ACGT 2 cut(s) 70, 411
MaeIII GTNAC 2 cut(s) 480, 580
MalI GATC 8 cut(s) 4, 97, 506, 717, 783, 864, 1221, 1407
MboI GATC 8 cut(s) 2, 95, 504, 715, 781, 862, 1219, 1405
MboII GAAGA 7 cut(s) 121, 569, 606, 623, 970, 1097, 1218
MflI RGATCY 2 cut(s) 95, 715
MhlI GDGCHC 2 cut(s) 609, 950
MluCI AATT 8 cut(s) 206, 299, 322, 430, 452, 498, 936, 977
MlyI GAGTC 4 cut(s) 488, 719, 828, 1027
MroXI GAANNNNTTC 1 cut(s) 590
MseI TTAA 8 cut(s) 312, 486, 672, 797, 810, 939, 975, 1170
MslI CAYNNNNRTG 4 cut(s) 69, 687, 1113, 1281
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 2 cut(s) 368, 1125
MspR9I CCNGG 3 cut(s) 596, 757, 909
Mva1269I GAATGC 2 cut(s) 713, 1276
MvaI CCWGG 3 cut(s) 596, 757, 909
MwoI GCNNNNNNNGC 3 cut(s) 112, 377, 1273
NdeII GATC 8 cut(s) 2, 95, 504, 715, 781, 862, 1219, 1405
NheI GCTAGC 1 cut(s) 38
NlaIII CATG 9 cut(s) 142, 359, 692, 928, 999, 1112, 1226, 1329, 1380
NlaIV GGNNCC 3 cut(s) 930, 1001, 1159
NmuCI GTSAC 1 cut(s) 480
NspI RCATGY 1 cut(s) 692
NspV TTCGAA 1 cut(s) 1081
PagI TCATGA 2 cut(s) 1108, 1222
PciI ACATGT 1 cut(s) 688
PcsI WCGNNNNNNNCGW 1 cut(s) 838
PctI GAATGC 2 cut(s) 713, 1276
PdmI GAANNNNTTC 1 cut(s) 590
PfeI GAWTC 2 cut(s) 1049, 1244
PfoI TCCNGGA 1 cut(s) 594
PkrI GCNGC 2 cut(s) 105, 821
PleI GAGTC 4 cut(s) 487, 719, 828, 1027
PpsI GAGTC 4 cut(s) 487, 719, 828, 1027
PpuMI RGGWCCY 1 cut(s) 1000
PscI ACATGT 1 cut(s) 688
Psp5II RGGWCCY 1 cut(s) 1000
Psp6I CCWGG 3 cut(s) 594, 755, 907
PspGI CCWGG 3 cut(s) 594, 755, 907
PspN4I GGNNCC 3 cut(s) 930, 1001, 1159
PspPI GGNCC 3 cut(s) 1000, 1158, 1389
PspPPI RGGWCCY 1 cut(s) 1000
PstNI CAGNNNCTG 2 cut(s) 133, 173
PsuI RGATCY 2 cut(s) 95, 715
RsaI GTAC 1 cut(s) 551
RsaNI GTAC 1 cut(s) 550
RseI CAYNNNNRTG 4 cut(s) 69, 687, 1113, 1281
SaqAI TTAA 8 cut(s) 312, 486, 672, 797, 810, 939, 975, 1170
SatI GCNGC 2 cut(s) 104, 820
Sau3AI GATC 8 cut(s) 2, 95, 504, 715, 781, 862, 1219, 1405
Sau96I GGNCC 3 cut(s) 1000, 1158, 1389
SchI GAGTC 4 cut(s) 488, 719, 828, 1027
ScrFI CCNGG 3 cut(s) 596, 757, 909
SduI GDGCHC 2 cut(s) 609, 950
SfaNI GCATC 2 cut(s) 550, 1331
SfcI CTRYAG 2 cut(s) 33, 963
SfuI TTCGAA 1 cut(s) 1081
SgrAI CRCCGGYG 1 cut(s) 367
SinI GGWCC 2 cut(s) 1000, 1158
SmiI ATTTAAAT 1 cut(s) 976
SmiMI CAYNNNNRTG 4 cut(s) 69, 687, 1113, 1281
SmlI CTYRAG 2 cut(s) 338, 644
SmoI CTYRAG 2 cut(s) 338, 644
SpeI ACTAGT 1 cut(s) 1187
Sse9I AATT 8 cut(s) 206, 299, 322, 430, 452, 498, 936, 977
SsiI CCGC 4 cut(s) 104, 371, 820, 1337
SspI AATATT 1 cut(s) 1097
SspMI CTAG 4 cut(s) 12, 39, 1188, 1281
StyD4I CCNGG 3 cut(s) 594, 755, 907
SwaI ATTTAAAT 1 cut(s) 976
TaaI ACNGT 4 cut(s) 424, 795, 1334, 1401
TaiI ACGT 2 cut(s) 73, 414
TaqI TCGA 3 cut(s) 84, 316, 1081
TasI AATT 8 cut(s) 206, 299, 322, 430, 452, 498, 936, 977
TatI WGTACW 1 cut(s) 549
TauI GCSGC 2 cut(s) 106, 822
TfiI GAWTC 2 cut(s) 1049, 1244
Tru1I TTAA 8 cut(s) 312, 486, 672, 797, 810, 939, 975, 1170
Tru9I TTAA 8 cut(s) 312, 486, 672, 797, 810, 939, 975, 1170
TscAI CASTG 4 cut(s) 245, 769, 1339, 1406
TseFI GTSAC 1 cut(s) 480
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 8 cut(s) 671, 861, 930, 1083, 1089, 1097, 1131, 1397
TspRI CASTG 4 cut(s) 245, 769, 1339, 1406
VpaK11BI GGWCC 2 cut(s) 1000, 1158
XagI CCTNNNNNAGG 1 cut(s) 599
XapI RAATTY 4 cut(s) 206, 430, 452, 498
XceI RCATGY 1 cut(s) 692
XmiI GTMKAC 1 cut(s) 1373
XmnI GAANNNNTTC 1 cut(s) 590
XspI CTAG 4 cut(s) 12, 39, 1188, 1281
ZraI GACGTC 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.