Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006189

Physical Location & Seq

Genomic Coordinates Forward (+)

5698959 .. 5706691

Gene Structure 7733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G049600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGCTTCATTTGTTTCTATCAGAGCCCATCTGGAATGACAACGGAGATGACAATTCTGCCAAGATGAGAGTATCTCTCTTGAGTAATTTGGAATCTGTTATTTGGTCGGTCATGGCATCTGGAGGTCGATCAGAGGCTCGTCTGTGGCTTTGTAACACGATAGCTGGCATAAGTTCCATCAGTCGTCAACATCAGTGCGAGTTACTTACAAACTTGCTGAGATCTAAGCCGCTGAAGAGGGGCTTCGCATCTCAGCTCCTAGAAATGATATTTGAGAATAGGCCACACAAGGCAGGGTCCATTATTGCCAAGAGAAGTTACATACTTAAGAAATTCTTTGAAGGAAATCCAACACGAATATCTCAATGGTTTTCTAGAACTGGCGGTGGATTGGGCCATGGACCTGGTGCTAAGGCATTGTCGCAATTTTCTTTTGTTAATCGAGATATTTGTTGGGAGGAGCTTGAGTGGAAGGGAAAACATGGGCAATCACCAGCAGTGGTTGCTACAAAGCCCCATTACTTTCTTGATTTGGATGTCCAGGAAACTGTAGAGAATTTCCTTGAAAATGTCCCTGAATTTTGGTTGTCCAATGAGCTTTCTGAGTCACTTAAAGATGGTGAAATTTTGTTCGTTGATAGAAAATTTTTTGTTGAATTTTTTGTTGATTTGATGTATAAAGAGGATTCAAGAGATGTATGGGAAGTCACAAGTGAGTATCTGAAGGAGGAATGTTTTTCTTCGTTGTGCAAACGCCTTCTTATTACTCTTGATGAGTGGGACTTATGTGATTTTCTTAACATGCTTCATAAGAATCTCAACCCTAGAATGGAGCTCAAGGATCCTATGGACTCAAGTTATTTGTTTGAGGTTATACTTTCTAAGTGTGGTGATTTTAGGTGCTTCGATCAGATATTACTGTTAAATGCAGTTTTTAATCATGGACGCCAGCTTTTACGACTTCTACGAGATGAAGAGGCCCACGAGGAAAAGGAAAAACTTGAAGACATTGTTTTGAAGATTTGCGGAATCCCAAACAATGACAGTAGCTTGGCCTCAATAATCAAAGATTGCTTTAAAATGAAGAATATAGAAGCATTTAAATTGCTGGGGCTTCAGTCATGGGTTATCTATTACAGTTTAGCAGAAAAATGCCAGACTCCCAAGTCTTGGGAATTATTATTTATGCATAATGAAATAAGTTTCCGAAAATCAGATAGATATTTATTTCTAGATAATCATGGAGTGTTGGAAGGTGGTGTTTCTGATTTGGATCATAGAGCATCCAAAACAGTTAAGCACAGGAAAAAACATAGTAGAAGGAAAAGAAAAAGGGACATCAATCATGATGACAGCGACAATGAGTTGCTGGATTTGGGAACCACAAAAAATAGGCTGGATTTGCAATCTAATGTTGGAAGTTGGTTGCTCTCAATTGATGAGTATTCTGCATCATGGAACAGTGAGGATTTACCCGAATATCTTTCCAAGTATTGCTTATCTACATGGATGAAGTGGGTGTTTGCACAATGGGGTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

514

Amino Acids

59.66

Weight (kDa)

5.98

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006189)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48340 AT5G48340 AT5G48340 AT5G48340
fragaria_vesca	FvH4_5g32260
malus_domestica	MD02G1270700.v1.1
prunus_persica	Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1 Prupe.2G049600_v2.0.a1
pyrus_communis	pycom02g23160
rosa_chinensis	RchiOBHm_Chr7g0228451
rosa_laevigata	RLG00000001563
rosa_multiflora	Rmu_sc0004041.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231130
rosa_rugosa	Rorug07G0249400 Rorug07G0249500.1 Rorug07G0249600
rosa_samantha	Rh7AG401900 Rh7BG382900 Rh7CG420900 Rh7DG398000
rosa_wichuraiana	Rw7G033410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1165
AccB7I	CCANNNNNTGG	1 cut(s)	1170
AciI	CCGC	3 cut(s)	230, 384, 1026
AclWI	GGATC	3 cut(s)	836, 849, 1281
AcsI	RAATTY	6 cut(s)	332, 556, 578, 624, 644, 656
AcuI	CTGAAG	3 cut(s)	254, 743, 1100
AcyI	GRCGYC	1 cut(s)	946
AfiI	CCNNNNNNNGG	2 cut(s)	829, 1170
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	6 cut(s)	341, 566, 656, 690, 1004, 1018
AjnI	CCWGG	2 cut(s)	403, 540
AluBI	AGCT	7 cut(s)	164, 256, 463, 598, 835, 952, 1050
AluI	AGCT	7 cut(s)	164, 256, 463, 598, 835, 952, 1050
Alw21I	GWGCWC	1 cut(s)	837
AlwI	GGATC	3 cut(s)	836, 849, 1281
AoxI	GGCC	4 cut(s)	281, 394, 978, 1053
ApoI	RAATTY	6 cut(s)	332, 556, 578, 624, 644, 656
AspS9I	GGNCC	4 cut(s)	297, 394, 401, 979
AsuHPI	GGTGA	3 cut(s)	483, 632, 902
AvaII	GGWCC	2 cut(s)	297, 401
BamHI	GGATCC	1 cut(s)	841
BanII	GRGCYC	2 cut(s)	27, 837
BauI	CACGAG	1 cut(s)	983
BbsI	GAAGAC	1 cut(s)	1011
Bbv12I	GWGCWC	1 cut(s)	837
BccI	CCATC	3 cut(s)	35, 185, 611
BciT130I	CCWGG	2 cut(s)	405, 542
BfaI	CTAG	4 cut(s)	260, 375, 825, 1232
BfmI	CTRYAG	1 cut(s)	549
BfrI	CTTAAG	1 cut(s)	326
BglII	AGATCT	1 cut(s)	221
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	2 cut(s)	405, 542
Bme18I	GGWCC	2 cut(s)	297, 401
BmgT120I	GGNCC	4 cut(s)	297, 394, 401, 979
BmiI	GGNNCC	3 cut(s)	298, 843, 1381
BmrFI	CCNGG	2 cut(s)	405, 542
BmsI	GCATC	4 cut(s)	125, 257, 1292, 1460
BpiI	GAAGAC	1 cut(s)	1011
BplI	GAGNNNNNCTC	4 cut(s)	58, 90, 60, 92
BpmI	CTGGAG	1 cut(s)	141
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	4 cut(s)	100, 485, 821, 838
BsaBI	GATNNNNATC	1 cut(s)	1272
BsaHI	GRCGYC	1 cut(s)	946
BsaJI	CCNNGG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	829, 1170
Bse1I	ACTGG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	1272
BseBI	CCWGG	2 cut(s)	405, 542
BseDI	CCNNGG	1 cut(s)	397
BseGI	GGATG	3 cut(s)	541, 1283, 1515
BseJI	GATNNNNATC	1 cut(s)	1272
BseLI	CCNNNNNNNGG	2 cut(s)	829, 1170
BseMII	CTCAG	3 cut(s)	209, 266, 594
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	1 cut(s)	473
BseYI	CCCAGC	1 cut(s)	1108
BshFI	GGCC	4 cut(s)	283, 396, 980, 1055
BsiHKAI	GWGCWC	1 cut(s)	837
BslFI	GGGAC	3 cut(s)	557, 794, 1349
BslI	CCNNNNNNNGG	2 cut(s)	829, 1170
BsmFI	GGGAC	3 cut(s)	557, 794, 1349
BsnI	GGCC	4 cut(s)	283, 396, 980, 1055
Bsp1286I	GDGCHC	2 cut(s)	27, 837
Bsp143I	GATC	5 cut(s)	128, 221, 841, 907, 1273
Bsp19I	CCATGG	1 cut(s)	397
BspACI	CCGC	3 cut(s)	230, 384, 1026
BspANI	GGCC	4 cut(s)	283, 396, 980, 1055
BspCNI	CTCAG	3 cut(s)	210, 265, 595
BspHI	TCATGA	1 cut(s)	1345
BspLI	GGNNCC	3 cut(s)	298, 843, 1381
BspPI	GGATC	3 cut(s)	836, 849, 1281
BspTI	CTTAAG	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	5 cut(s)	128, 221, 841, 907, 1273
BssNI	GRCGYC	1 cut(s)	946
BssSI	CACGAG	1 cut(s)	983
BssT1I	CCWWGG	1 cut(s)	397
Bst2BI	CACGAG	1 cut(s)	983
Bst2UI	CCWGG	2 cut(s)	405, 542
Bst4CI	ACNGT	6 cut(s)	550, 921, 1046, 1139, 1294, 1463
Bst6I	CTCTTC	2 cut(s)	230, 969
BstACI	GRCGYC	1 cut(s)	946
BstAFI	CTTAAG	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	166, 950
BstDEI	CTNAG	6 cut(s)	218, 225, 252, 411, 603, 882
BstDSI	CCRYGG	1 cut(s)	397
BstF5I	GGATG	3 cut(s)	541, 1283, 1515
BstKTI	GATC	5 cut(s)	131, 224, 844, 910, 1276
BstMBI	GATC	5 cut(s)	128, 221, 841, 907, 1273
BstMWI	GCNNNNNNNGC	2 cut(s)	503, 1402
BstNI	CCWGG	2 cut(s)	405, 542
BstNSI	RCATGY	1 cut(s)	805
BstSCI	CCNGG	2 cut(s)	403, 540
BstSFI	CTRYAG	1 cut(s)	549
BstV2I	GAAGAC	1 cut(s)	1011
BstX2I	RGATCY	2 cut(s)	221, 841
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	2 cut(s)	221, 841
BsuRI	GGCC	4 cut(s)	283, 396, 980, 1055
BtgI	CCRYGG	1 cut(s)	397
BtsCI	GGATG	3 cut(s)	541, 1283, 1515
BtsI	GCAGTG	1 cut(s)	504
BtsIMutI	CAGTG	3 cut(s)	200, 504, 1468
Cac8I	GCNNGC	2 cut(s)	166, 950
CciI	TCATGA	1 cut(s)	1345
Cfr13I	GGNCC	4 cut(s)	297, 394, 401, 979
CseI	GACGC	1 cut(s)	954
CsiI	ACCWGGT	1 cut(s)	403
DdeI	CTNAG	6 cut(s)	218, 225, 252, 411, 603, 882
DpnI	GATC	5 cut(s)	130, 223, 843, 909, 1275
DpnII	GATC	5 cut(s)	128, 221, 841, 907, 1273
DraI	TTTAAA	2 cut(s)	1078, 1102
DrdI	GACNNNNNNGTC	1 cut(s)	1165
DseDI	GACNNNNNNGTC	1 cut(s)	1165
Eam1104I	CTCTTC	2 cut(s)	230, 969
EarI	CTCTTC	2 cut(s)	230, 969
Ecl136II	GAGCTC	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	397
Eco24I	GRGCYC	2 cut(s)	27, 837
Eco47I	GGWCC	2 cut(s)	297, 401
Eco53kI	GAGCTC	1 cut(s)	835
Eco57I	CTGAAG	3 cut(s)	254, 743, 1100
EcoICRI	GAGCTC	1 cut(s)	835
EcoRII	CCWGG	2 cut(s)	403, 540
EcoT14I	CCWWGG	1 cut(s)	397
EcoT22I	ATGCAT	1 cut(s)	1191
EcoT38I	GRGCYC	2 cut(s)	27, 837
ErhI	CCWWGG	1 cut(s)	397
FalI	AAGNNNNNCTT	6 cut(s)	227, 259, 320, 352, 1481, 1513
FaqI	GGGAC	3 cut(s)	557, 794, 1349
Fnu4HI	GCNGC	1 cut(s)	230
FokI	GGATG	3 cut(s)	548, 1270, 1522
FriOI	GRGCYC	2 cut(s)	27, 837
Fsp4HI	GCNGC	1 cut(s)	230
FspBI	CTAG	4 cut(s)	260, 375, 825, 1232
GluI	GCNGC	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	1112
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	283, 396, 980, 1055
HgaI	GACGC	1 cut(s)	954
Hin1I	GRCGYC	1 cut(s)	946
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HinfI	GANTC	7 cut(s)	92, 605, 686, 814, 851, 1029, 1159
HphI	GGTGA	3 cut(s)	483, 632, 902
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	8 cut(s)	22, 133, 604, 723, 912, 1208, 1216, 1267
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	6 cut(s)	335, 466, 718, 767, 1247, 1314
HpyCH4III	ACNGT	6 cut(s)	550, 921, 1046, 1139, 1294, 1463
HpyCH4V	TGCA	6 cut(s)	750, 929, 1189, 1405, 1451, 1526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	503, 1402
HpyF3I	CTNAG	6 cut(s)	218, 225, 252, 411, 603, 882
Hsp92I	GRCGYC	1 cut(s)	946
Kzo9I	GATC	5 cut(s)	128, 221, 841, 907, 1273
LmnI	GCTCC	3 cut(s)	261, 460, 832
LweI	GCATC	4 cut(s)	125, 257, 1292, 1460
MabI	ACCWGGT	1 cut(s)	403
MaeI	CTAG	4 cut(s)	260, 375, 825, 1232
MaeIII	GTNAC	5 cut(s)	152, 201, 317, 606, 706
MalI	GATC	5 cut(s)	130, 223, 843, 909, 1275
MboI	GATC	5 cut(s)	128, 221, 841, 907, 1273
MboII	GAAGA	6 cut(s)	247, 732, 986, 1016, 1030, 1096
MfeI	CAATTG	1 cut(s)	1434
MflI	RGATCY	2 cut(s)	221, 841
MhlI	GDGCHC	2 cut(s)	27, 837
MlyI	GAGTC	3 cut(s)	614, 845, 1153
MmeI	TCCRAC	3 cut(s)	374, 1230, 1396
Mph1103I	ATGCAT	1 cut(s)	1191
MseI	TTAA	9 cut(s)	327, 438, 612, 798, 923, 936, 1077, 1101, 1296
MspA1I	CMGCKG	1 cut(s)	232
MspCI	CTTAAG	1 cut(s)	326
MspR9I	CCNGG	2 cut(s)	405, 542
MunI	CAATTG	1 cut(s)	1434
MvaI	CCWGG	2 cut(s)	405, 542
MwoI	GCNNNNNNNGC	2 cut(s)	503, 1402
NcoI	CCATGG	1 cut(s)	397
NdeII	GATC	5 cut(s)	128, 221, 841, 907, 1273
NlaIV	GGNNCC	3 cut(s)	298, 843, 1381
NmuCI	GTSAC	2 cut(s)	606, 706
NsiI	ATGCAT	1 cut(s)	1191
NspI	RCATGY	1 cut(s)	805
PagI	TCATGA	1 cut(s)	1345
PcsI	WCGNNNNNNNCGW	1 cut(s)	964
PfeI	GAWTC	4 cut(s)	92, 686, 814, 1029
PflMI	CCANNNNNTGG	1 cut(s)	1170
PfoI	TCCNGGA	1 cut(s)	540
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	3 cut(s)	613, 845, 1153
PpsI	GAGTC	3 cut(s)	613, 845, 1153
Psp124BI	GAGCTC	1 cut(s)	837
Psp6I	CCWGG	2 cut(s)	403, 540
PspFI	CCCAGC	1 cut(s)	1108
PspGI	CCWGG	2 cut(s)	403, 540
PspN4I	GGNNCC	3 cut(s)	298, 843, 1381
PspPI	GGNCC	4 cut(s)	297, 394, 401, 979
PsuI	RGATCY	2 cut(s)	221, 841
SacI	GAGCTC	1 cut(s)	837
SaqAI	TTAA	9 cut(s)	327, 438, 612, 798, 923, 936, 1077, 1101, 1296
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	5 cut(s)	128, 221, 841, 907, 1273
Sau96I	GGNCC	4 cut(s)	297, 394, 401, 979
SchI	GAGTC	3 cut(s)	614, 845, 1153
ScrFI	CCNGG	2 cut(s)	405, 542
SduI	GDGCHC	2 cut(s)	27, 837
SexAI	ACCWGGT	1 cut(s)	403
SfaNI	GCATC	4 cut(s)	125, 257, 1292, 1460
SfcI	CTRYAG	1 cut(s)	549
SinI	GGWCC	2 cut(s)	297, 401
SmiI	ATTTAAAT	1 cut(s)	1102
SmlI	CTYRAG	5 cut(s)	79, 326, 464, 836, 853
SmoI	CTYRAG	5 cut(s)	79, 326, 464, 836, 853
SsiI	CCGC	3 cut(s)	230, 384, 1026
SspMI	CTAG	4 cut(s)	260, 375, 825, 1232
SstI	GAGCTC	1 cut(s)	837
StyD4I	CCNGG	2 cut(s)	403, 540
StyI	CCWWGG	1 cut(s)	397
SwaI	ATTTAAAT	1 cut(s)	1102
TaaI	ACNGT	6 cut(s)	550, 921, 1046, 1139, 1294, 1463
TaqI	TCGA	3 cut(s)	127, 442, 906
TaqII	GACCGA	1 cut(s)	97
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	4 cut(s)	92, 686, 814, 1029
Tru1I	TTAA	9 cut(s)	327, 438, 612, 798, 923, 936, 1077, 1101, 1296
Tru9I	TTAA	9 cut(s)	327, 438, 612, 798, 923, 936, 1077, 1101, 1296
TscAI	CASTG	3 cut(s)	200, 504, 1468
TseFI	GTSAC	2 cut(s)	606, 706
Tsp45I	GTSAC	2 cut(s)	606, 706
TspDTI	ATGAA	5 cut(s)	797, 987, 1097, 1209, 1526
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	3 cut(s)	200, 504, 1468
Van91I	CCANNNNNTGG	1 cut(s)	1170
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	297, 401
XapI	RAATTY	6 cut(s)	332, 556, 578, 624, 644, 656
XbaI	TCTAGA	2 cut(s)	374, 1231
XceI	RCATGY	1 cut(s)	805
XspI	CTAG	4 cut(s)	260, 375, 825, 1232
Zsp2I	ATGCAT	1 cut(s)	1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.