RLG00000001563

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006189
Physical Location & Seq
Reverse (-)
17547211 .. 17549787
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001563

Sequence Viewer

Length: 1530 bp
ATGCTTGATTTGTTTCTGTCGGAGCCCAATTGGAAAGAAGATGACTCTGCCGAGATGAGAGTGTCTCTCTTGAACAAATTGGAATCTGTTATTTGGTCGTTGATGGCTTCTGGGGGTCGATCAGAGGCTAGACTATGGCTTTGCAATACTATAGCTGGCATAAGTTCTATCACTCATCATCATCAACGTGAGTTATTTATCGACTTATTGAGATCTAAGCCGCTGAAGAAGCGCTTAGCAACTCAGCTCCTGCACATGATATTTGATAATAGGCCTCAAAAGGCAGGGTCTGTCATAGCCAAGAGAAGTTATGCGCTTAGGAAATTTTTTCAAGGAAACCCAACACGAATATCTCAGTGGTTTTCCAAAACTGGTTCTGGATTGGGGCAGGGACAAGGTGCTAATGTGTTATCCCAATTTGCTTTTGTTAATCGAGATAATTGTTGGGAGGAGCTTGAGTGGAAGGGAAAACATGGGCAGTCACCAGCGGTAGTTGCTACAAAACCCCATTACTTTCTTGATTTGGACGTCCAGCAAACCGTAGAGAATTTCCTTCAAAATGTGCCTGAATTTTGGTCATCCAATGAGTTTTCTGAGTCACTTAAAGGTGGAGAAATTTTGATCATTGATAGAAACTTTTTTGTTCTATATTTTCTGGATTTGATGTACAAAGAAGATGCCAGAGATGTATGGGAAGTTACGAATGAGTTCCTGGAGGAGGAGCGCTTTTCTTCCCTTTGTAAACATCTTCTTATTACTCTGGAGGAGTCAGACTTATGTGATTTTCTTAAAATGCTTCATAAACATGTCAAGCCTAAAGTAGAATGCAAAGATCCTATGGACTGCTCTTATATGTTTGAAGTTGTAGTATCTAGGTGCAGTGATTGTGAGTGCTTTGATCAGATATTACTGTTAAATGCAGTTTTTAACTATGGACGCCAGCTTCTACGACTCTTACGAGATGAAGGAGCGCCTGAGGATCAAGCAAAACTACAAGATATTGTGTCTGAGATTTGTGCAATCCCAGGCAATGAAAATAGCATGGCACCAATAATTAAAGGGGGCTCTAAACTGAAGACTATAGAAGCATTTAAATTGATGGGGATTCAGTCATGGGTCCTCTTTTTTAGTTTATCAGAAAAATGCCAGACTCCTCAGTCTTGGGAATCATTATTTTTTTATAATGAAATAAGTTTTCGAAAGTATGATAAATATTCATTTCTTCATGACAATGAAGTTGCCGAAGAAGGTGGTTCTGATTTGGATTATAGAGGGTCCAAAAAAGTTAAGCGAAGGAAAAAGACTAGTAGTAGAAGTAAAAGAAGAAGGGACTTTGATCATGATGACAATGAGTTGCTGGATTTCGATACTACAAATAATAGGCTGGATTTGCATTCTAGCGTGGGAAGTTGGTTGCTCTCACTTGATGGGTATTCTGCATCATGGAACAGTGTGGATTTACCCGAATATCTTTCCAAGTATTGCTTGTCTACATGGATGAAGTGGGCCTTAGCACAGTGGGATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

510

Amino Acids

59.0

Weight (kDa)

5.75

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1182
AasI GACNNNNNNGTC 1 cut(s) 1156
AatII GACGTC 1 cut(s) 531
AccB1I GGYRCC 1 cut(s) 1045
AccI GTMKAC 1 cut(s) 1490
AciI CCGC 2 cut(s) 221, 488
AclWI GGATC 2 cut(s) 827, 987
AcsI RAATTY 4 cut(s) 323, 547, 569, 615
AcuI CTGAAG 2 cut(s) 245, 1094
AcyI GRCGYC 2 cut(s) 528, 937
AfaI GTAC 1 cut(s) 668
AfeI AGCGCT 2 cut(s) 233, 725
AfiI CCNNNNNNNGG 1 cut(s) 718
AflIII ACRYGT 1 cut(s) 805
AgsI TTSAA 4 cut(s) 73, 332, 557, 860
AhlI ACTAGT 1 cut(s) 1304
AjnI CCWGG 2 cut(s) 711, 1024
AluBI AGCT 4 cut(s) 155, 247, 454, 943
AluI AGCT 4 cut(s) 155, 247, 454, 943
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 2 cut(s) 827, 987
AlwNI CAGNNNCTG 2 cut(s) 250, 290
Aor51HI AGCGCT 2 cut(s) 233, 725
AoxI GGCC 2 cut(s) 272, 1506
ApoI RAATTY 4 cut(s) 323, 547, 569, 615
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
Asp700I GAANNNNTTC 1 cut(s) 707
AspLEI GCGC 4 cut(s) 234, 316, 726, 973
AspS9I GGNCC 3 cut(s) 1117, 1275, 1506
AsuHPI GGTGA 1 cut(s) 474
AsuII TTCGAA 1 cut(s) 1198
AvaII GGWCC 2 cut(s) 1117, 1275
AxyI CCTNAGG 1 cut(s) 975
BanI GGYRCC 1 cut(s) 1045
BanII GRGCYC 2 cut(s) 27, 1067
BbsI GAAGAC 1 cut(s) 1082
BccI CCATC 3 cut(s) 97, 1093, 1421
BciT130I CCWGG 2 cut(s) 713, 1026
BclI TGATCA 3 cut(s) 621, 898, 1336
BcoDI GTCTC 1 cut(s) 69
BcuI ACTAGT 1 cut(s) 1304
BfaI CTAG 4 cut(s) 129, 873, 1305, 1398
BfmI CTRYAG 2 cut(s) 150, 1080
BfoI RGCGCY 3 cut(s) 235, 727, 974
BglII AGATCT 1 cut(s) 212
BisI GCNGC 1 cut(s) 221
BlpI GCTNAGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 222
Bme1390I CCNGG 2 cut(s) 713, 1026
Bme18I GGWCC 2 cut(s) 1117, 1275
BmgT120I GGNCC 3 cut(s) 1117, 1275, 1506
BmiI GGNNCC 4 cut(s) 24, 1047, 1118, 1276
BmrFI CCNGG 2 cut(s) 713, 1026
BmsI GCATC 2 cut(s) 667, 1448
BpiI GAAGAC 1 cut(s) 1082
BplI GAGNNNNNCTC 4 cut(s) 49, 81, 51, 83
BpmI CTGGAG 2 cut(s) 734, 782
Bpu10I CCTNAGC 2 cut(s) 317, 1510
Bpu1102I GCTNAGC 1 cut(s) 235
Bpu14I TTCGAA 1 cut(s) 1198
BpuEI CTTGAG 1 cut(s) 476
BsaHI GRCGYC 2 cut(s) 528, 937
BsaJI CCNNGG 1 cut(s) 1024
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 718
Bse1I ACTGG 1 cut(s) 376
Bse21I CCTNAGG 1 cut(s) 975
Bse3DI GCAATG 1 cut(s) 1036
BseBI CCWGG 2 cut(s) 713, 1026
BseDI CCNNGG 1 cut(s) 1024
BseGI GGATG 2 cut(s) 578, 1503
BseLI CCNNNNNNNGG 1 cut(s) 718
BseMI GCAATG 1 cut(s) 1036
BseMII CTCAG 6 cut(s) 257, 368, 585, 966, 999, 1169
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 5 cut(s) 464, 731, 734, 779, 1143
BsgI GTGCAG 2 cut(s) 236, 898
BshFI GGCC 2 cut(s) 274, 1508
BshNI GGYRCC 1 cut(s) 1045
BslFI GGGAC 2 cut(s) 405, 1343
BslI CCNNNNNNNGG 1 cut(s) 718
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 2 cut(s) 405, 1343
BsmI GAATGC 2 cut(s) 830, 1393
BsnI GGCC 2 cut(s) 274, 1508
Bsp119I TTCGAA 1 cut(s) 1198
Bsp1286I GDGCHC 2 cut(s) 27, 1067
Bsp1407I TGTACA 1 cut(s) 666
Bsp143I GATC 8 cut(s) 119, 212, 621, 832, 898, 979, 1336, 1522
Bsp1720I GCTNAGC 1 cut(s) 235
BspACI CCGC 2 cut(s) 221, 488
BspANI GGCC 2 cut(s) 274, 1508
BspCNI CTCAG 6 cut(s) 256, 367, 586, 967, 1000, 1168
BspHI TCATGA 2 cut(s) 1225, 1339
BspLI GGNNCC 4 cut(s) 24, 1047, 1118, 1276
BspPI GGATC 2 cut(s) 827, 987
BspT104I TTCGAA 1 cut(s) 1198
BspT107I GGYRCC 1 cut(s) 1045
BsrDI GCAATG 1 cut(s) 1036
BsrGI TGTACA 1 cut(s) 666
BsrI ACTGG 1 cut(s) 376
BssECI CCNNGG 1 cut(s) 1024
BssMI GATC 8 cut(s) 119, 212, 621, 832, 898, 979, 1336, 1522
BssNI GRCGYC 2 cut(s) 528, 937
Bst2UI CCWGG 2 cut(s) 713, 1026
Bst4CI ACNGT 4 cut(s) 541, 912, 1451, 1518
BstACI GRCGYC 2 cut(s) 528, 937
BstAUI TGTACA 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 1198
BstC8I GCNNGC 2 cut(s) 157, 941
BstENI CCTNNNNNAGG 1 cut(s) 716
BstF5I GGATG 2 cut(s) 578, 1503
BstH2I RGCGCY 3 cut(s) 235, 727, 974
BstHHI GCGC 4 cut(s) 234, 316, 726, 973
BstKTI GATC 8 cut(s) 122, 215, 624, 835, 901, 982, 1339, 1525
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 8 cut(s) 119, 212, 621, 832, 898, 979, 1336, 1522
BstMWI GCNNNNNNNGC 3 cut(s) 229, 494, 1390
BstNI CCWGG 2 cut(s) 713, 1026
BstNSI RCATGY 1 cut(s) 809
BstSCI CCNGG 2 cut(s) 711, 1024
BstSFI CTRYAG 2 cut(s) 150, 1080
BstV2I GAAGAC 1 cut(s) 1082
BstX2I RGATCY 2 cut(s) 212, 832
BstYI RGATCY 2 cut(s) 212, 832
Bsu36I CCTNAGG 1 cut(s) 975
BsuRI GGCC 2 cut(s) 274, 1508
BtsCI GGATG 2 cut(s) 578, 1503
BtsI GCAGTG 1 cut(s) 886
BtsIMutI CAGTG 4 cut(s) 362, 886, 1456, 1523
Cac8I GCNNGC 2 cut(s) 157, 941
CaiI CAGNNNCTG 2 cut(s) 250, 290
CciI TCATGA 2 cut(s) 1225, 1339
CfoI GCGC 4 cut(s) 234, 316, 726, 973
Cfr13I GGNCC 3 cut(s) 1117, 1275, 1506
CseI GACGC 1 cut(s) 945
Csp6I GTAC 1 cut(s) 667
CviAII CATG 9 cut(s) 256, 473, 806, 1042, 1113, 1226, 1340, 1443, 1494
CviQI GTAC 1 cut(s) 667
DpnI GATC 8 cut(s) 121, 214, 623, 834, 900, 981, 1338, 1524
DpnII GATC 8 cut(s) 119, 212, 621, 832, 898, 979, 1336, 1522
DraI TTTAAA 1 cut(s) 1093
DrdI GACNNNNNNGTC 1 cut(s) 1156
DseDI GACNNNNNNGTC 1 cut(s) 1156
Eco147I AGGCCT 1 cut(s) 274
Eco24I GRGCYC 2 cut(s) 27, 1067
Eco47I GGWCC 2 cut(s) 1117, 1275
Eco47III AGCGCT 2 cut(s) 233, 725
Eco57I CTGAAG 2 cut(s) 245, 1094
Eco81I CCTNAGG 1 cut(s) 975
EcoNI CCTNNNNNAGG 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 1117
EcoRII CCWGG 2 cut(s) 711, 1024
EcoT38I GRGCYC 2 cut(s) 27, 1067
FaeI CATG 9 cut(s) 259, 476, 809, 1045, 1116, 1229, 1343, 1446, 1497
FalI AAGNNNNNCTT 6 cut(s) 218, 250, 1469, 1501, 1493, 1525
FaqI GGGAC 2 cut(s) 405, 1343
FatI CATG 9 cut(s) 255, 472, 805, 1041, 1112, 1225, 1339, 1442, 1493
FbaI TGATCA 3 cut(s) 621, 898, 1336
FblI GTMKAC 1 cut(s) 1490
Fnu4HI GCNGC 1 cut(s) 221
FokI GGATG 2 cut(s) 565, 1510
FriOI GRGCYC 2 cut(s) 27, 1067
Fsp4HI GCNGC 1 cut(s) 221
FspBI CTAG 4 cut(s) 129, 873, 1305, 1398
GlaI GCGC 4 cut(s) 233, 315, 725, 972
GluI GCNGC 1 cut(s) 221
GsuI CTGGAG 2 cut(s) 734, 782
HaeII RGCGCY 3 cut(s) 235, 727, 974
HaeIII GGCC 2 cut(s) 274, 1508
HgaI GACGC 1 cut(s) 945
HhaI GCGC 4 cut(s) 234, 316, 726, 973
Hin1I GRCGYC 2 cut(s) 528, 937
Hin1II CATG 9 cut(s) 259, 476, 809, 1045, 1116, 1229, 1343, 1446, 1497
Hin6I GCGC 4 cut(s) 232, 314, 724, 971
HinP1I GCGC 4 cut(s) 232, 314, 724, 971
HinfI GANTC 8 cut(s) 44, 83, 596, 767, 951, 1105, 1150, 1166
HphI GGTGA 1 cut(s) 474
Hpy166II GTNNAC 2 cut(s) 743, 1491
Hpy188I TCNGA 8 cut(s) 22, 124, 595, 772, 903, 1009, 1138, 1258
Hpy188III TCNNGA 8 cut(s) 70, 378, 434, 518, 656, 761, 1226, 1340
Hpy8I GTNNAC 2 cut(s) 743, 1491
HpyAV CCTTC 6 cut(s) 457, 563, 959, 1241, 1287, 1320
HpyCH4III ACNGT 4 cut(s) 541, 912, 1451, 1518
HpyCH4IV ACGT 2 cut(s) 187, 528
HpyCH4V TGCA 8 cut(s) 144, 253, 828, 879, 920, 1019, 1393, 1439
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 494, 1390
HpySE526I ACGT 2 cut(s) 187, 528
Hsp92I GRCGYC 2 cut(s) 528, 937
Hsp92II CATG 9 cut(s) 259, 476, 809, 1045, 1116, 1229, 1343, 1446, 1497
HspAI GCGC 4 cut(s) 232, 314, 724, 971
Ksp22I TGATCA 3 cut(s) 621, 898, 1336
Kzo9I GATC 8 cut(s) 119, 212, 621, 832, 898, 979, 1336, 1522
LmnI GCTCC 5 cut(s) 22, 252, 451, 721, 968
LweI GCATC 2 cut(s) 667, 1448
MaeI CTAG 4 cut(s) 129, 873, 1305, 1398
MaeII ACGT 2 cut(s) 187, 528
MaeIII GTNAC 3 cut(s) 480, 597, 697
MalI GATC 8 cut(s) 121, 214, 623, 834, 900, 981, 1338, 1524
MboI GATC 8 cut(s) 119, 212, 621, 832, 898, 979, 1336, 1522
MboII GAAGA 9 cut(s) 50, 238, 686, 723, 740, 1087, 1214, 1256, 1335
MfeI CAATTG 1 cut(s) 28
MflI RGATCY 2 cut(s) 212, 832
MhlI GDGCHC 2 cut(s) 27, 1067
MlyI GAGTC 5 cut(s) 38, 605, 776, 945, 1144
MroXI GAANNNNTTC 1 cut(s) 707
MseI TTAA 8 cut(s) 429, 603, 789, 914, 927, 1056, 1092, 1287
MslI CAYNNNNRTG 3 cut(s) 186, 804, 1230
MspA1I CMGCKG 2 cut(s) 223, 488
MspR9I CCNGG 2 cut(s) 713, 1026
MunI CAATTG 1 cut(s) 28
Mva1269I GAATGC 2 cut(s) 830, 1393
MvaI CCWGG 2 cut(s) 713, 1026
MwoI GCNNNNNNNGC 3 cut(s) 229, 494, 1390
NdeII GATC 8 cut(s) 119, 212, 621, 832, 898, 979, 1336, 1522
NlaIII CATG 9 cut(s) 259, 476, 809, 1045, 1116, 1229, 1343, 1446, 1497
NlaIV GGNNCC 4 cut(s) 24, 1047, 1118, 1276
NmeAIII GCCGAG 1 cut(s) 76
NmuCI GTSAC 2 cut(s) 480, 597
NspI RCATGY 1 cut(s) 809
NspV TTCGAA 1 cut(s) 1198
PagI TCATGA 2 cut(s) 1225, 1339
PceI AGGCCT 1 cut(s) 274
PciI ACATGT 1 cut(s) 805
PcsI WCGNNNNNNNCGW 1 cut(s) 955
PctI GAATGC 2 cut(s) 830, 1393
PdmI GAANNNNTTC 1 cut(s) 707
PfeI GAWTC 3 cut(s) 83, 1105, 1166
PfoI TCCNGGA 1 cut(s) 711
PkrI GCNGC 1 cut(s) 222
PleI GAGTC 5 cut(s) 38, 604, 775, 945, 1144
PpsI GAGTC 5 cut(s) 38, 604, 775, 945, 1144
PpuMI RGGWCCY 1 cut(s) 1117
PscI ACATGT 1 cut(s) 805
PsiI TTATAA 1 cut(s) 1182
Psp5II RGGWCCY 1 cut(s) 1117
Psp6I CCWGG 2 cut(s) 711, 1024
PspGI CCWGG 2 cut(s) 711, 1024
PspN4I GGNNCC 4 cut(s) 24, 1047, 1118, 1276
PspPI GGNCC 3 cut(s) 1117, 1275, 1506
PspPPI RGGWCCY 1 cut(s) 1117
PstNI CAGNNNCTG 2 cut(s) 250, 290
PsuI RGATCY 2 cut(s) 212, 832
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
RseI CAYNNNNRTG 3 cut(s) 186, 804, 1230
SaqAI TTAA 8 cut(s) 429, 603, 789, 914, 927, 1056, 1092, 1287
SatI GCNGC 1 cut(s) 221
Sau3AI GATC 8 cut(s) 119, 212, 621, 832, 898, 979, 1336, 1522
Sau96I GGNCC 3 cut(s) 1117, 1275, 1506
SchI GAGTC 5 cut(s) 38, 605, 776, 945, 1144
ScrFI CCNGG 2 cut(s) 713, 1026
SduI GDGCHC 2 cut(s) 27, 1067
SfaNI GCATC 2 cut(s) 667, 1448
SfcI CTRYAG 2 cut(s) 150, 1080
SfuI TTCGAA 1 cut(s) 1198
SinI GGWCC 2 cut(s) 1117, 1275
SmiI ATTTAAAT 1 cut(s) 1093
SmiMI CAYNNNNRTG 3 cut(s) 186, 804, 1230
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SpeI ACTAGT 1 cut(s) 1304
SseBI AGGCCT 1 cut(s) 274
SsiI CCGC 2 cut(s) 221, 488
SspI AATATT 1 cut(s) 1214
SspMI CTAG 4 cut(s) 129, 873, 1305, 1398
StuI AGGCCT 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 711, 1024
SwaI ATTTAAAT 1 cut(s) 1093
TaaI ACNGT 4 cut(s) 541, 912, 1451, 1518
TaiI ACGT 2 cut(s) 190, 531
TaqI TCGA 5 cut(s) 118, 201, 433, 1198, 1365
TatI WGTACW 1 cut(s) 666
TauI GCSGC 1 cut(s) 223
TfiI GAWTC 3 cut(s) 83, 1105, 1166
Tru1I TTAA 8 cut(s) 429, 603, 789, 914, 927, 1056, 1092, 1287
Tru9I TTAA 8 cut(s) 429, 603, 789, 914, 927, 1056, 1092, 1287
TscAI CASTG 4 cut(s) 362, 886, 1456, 1523
TseFI GTSAC 2 cut(s) 480, 597
Tsp45I GTSAC 2 cut(s) 480, 597
TspDTI ATGAA 8 cut(s) 788, 978, 1047, 1200, 1206, 1214, 1248, 1514
TspRI CASTG 4 cut(s) 362, 886, 1456, 1523
VpaK11BI GGWCC 2 cut(s) 1117, 1275
XagI CCTNNNNNAGG 1 cut(s) 716
XapI RAATTY 4 cut(s) 323, 547, 569, 615
XceI RCATGY 1 cut(s) 809
XmiI GTMKAC 1 cut(s) 1490
XmnI GAANNNNTTC 1 cut(s) 707
XspI CTAG 4 cut(s) 129, 873, 1305, 1398
ZraI GACGTC 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.