AT5G48570

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014948
Physical Location & Seq
Reverse (-)
19690461 .. 19693845
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48570.1

Sequence Viewer

Length: 1737 bp
ATGGAAGACGATTTCGACACGCAGAACCAGTTTCCGGAAGAGGAGCCAGAGGAGATGGATATGGATCTCCCCGACAATGACGAAGCTGACTCTGCTCCTTATCTGAAAATCGGCGAGGAAATGGAGATCGGAAAATCAGGATTGAAGAAGAAACTTGTTAAGGAATGTGAAAAATGGGACACGCCTGAGAACGGTGACGAAGTTGAAGTGCATTACACTGGAACTTTGTTAGATGGTACCAAGTTTGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATTTACTCTTGGCCAAGGACATGTCATTAAAGGATGGGACTTGGGGATCAAGACAATGAAGAAAGGTGAAAATGCTATTTTCACCATTCCTCCTGAGCTGGCATATGGTGAAACCGGTTCACCGCCGACTATACCTCCGAACGCTACTCTTCAGTTTGATGTGGAGTTGATAGCATGGAGGAGTGTTAAGGATATATGTGGTGATGGTGGTGTGTCTAAGAAAATAATTGTGGAAGGAGAAAAATGGGAGAAGCCAAAAGACCTTGATGAAGTTTACGTCAAGTATGAAGCTCGGCTTGAGGATGGCACCATTGTTGGAAAGTCTGATGGTGTAGAGTTTACTGTCAAGGAGGGCCATTTCTGTCCTGCGCTTTCTAAGGCTGTCAAAACCATGAAAAGAGGGGAGAAGGTTCTCCTGACTGTGAAGCCACAATATGGATTTGGGGAATTTGGAAGACCAGCTTCTGATGGTCTTCAAGCTGCAATCCCACCAAATGCAACCCTTCAGATTGACCTTGAGTTGGTTTCTTGGAAGACTGTGGTGGAAGTAACTGATGACAGGAAGGTTATTAAGAAAATACTCAAGGAAGGAGAAGGATATGAGCGTCCCAATGAAGGAGCGATTGTCAAATTGAAGTTGATTGGTAAACTTCAAGATGGAACAACCGTGTTTGTGAAGAAAGGTCATGAAGAAGATGAGGAGCCGTTCGAGTTCAAGATTGATGAAGAACAAGTGATAGAAGGGCTTGAAAAAGCTGTGATGGGCATGAAGAAGGGTGAGGTAGCACTCATCACAATTTCACCGGAATATGCTTTTGGTTCCTCTGAATCAAAACAGGAGCTGGCTGTAATACCGCCAAACTCGACTGTATACTATGAGGTCGAGTTGGTATCTTTCATCAAGGAGAAAGAGTCTTGGGATATGAACACACAGGAAAGGATAGAAGCTGCAGGCAAGAAGAAAGAAGAAGGCAATGTGTTGTTCAAAGCTGGAAAATACGCAAGAGCTTCAAAGAGATACGAGAGGGGTGTCAAATATATAGAATATGACTCAACTTTCGACGAAGAGGAGAAAAAGAAATCAAAAGATCTCAAGATTGCCTGTAACCTGAATGATGCAGCTTGCAAGCTGAAACTGAAAGATTACAAGGAAGCAGCAAAATTGTCCACAAAGGTGTTGGAGATGGATAGTAGGAACGTGAAGGCAATGTATAGGAGAGCACATGCCTACTTGGAGACGGCGGATCTTGATCTGGCTGAGCTTGATATCAAGAAAGCTCTCGAAATCGATCCAGACAACAAGGAGGTGAAGATAGAATATAAGAAGTTGAAGGAGAAGGTGAAAGAGTATAACAAGAAAGATGCTAAGTTTTACAGCAACATGTTGTCGAAAATGCTTGAGCCACACAAAGGAACTCAGAAGGAAGCACAAGCGATGAGTATTGACACCAAGGCATGA

Protein Analysis

578

Amino Acids

65.22

Weight (kDa)

5.16

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 61 - 150 1e-37 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C PF00254 175 - 268 2.6e-19 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C PF00254 293 - 390 1.1e-23 FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_19 PF14559 470 - 530 1.7e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014948)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48570
fragaria_vesca FvH4_4g12830
malus_domestica MD04G1022400.v1.1
prunus_persica Prupe.1G172600_v2.0.a1
pyrus_communis pycom04g01940
rosa_chinensis RchiOBHm_Chr4g0412331
rosa_laevigata RLG00000008307
rosa_multiflora Rmu_co8161348.1_g000001 Rmu_sc0010364.1_g000002 Rmu_sc0024446.1_g000002 Rmu_sc0041848.1_g000001
rosa_roxburghii Rroxscaffold_5G00356460
rosa_rugosa Rorug04G0104700
rosa_samantha Rh4AG172300 Rh4CG183200
rosa_wichuraiana Rw4G014400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 2 cut(s) 236, 584
AccB7I CCANNNNNTGG 1 cut(s) 713
AccI GTMKAC 1 cut(s) 1149
AccIII TCCGGA 1 cut(s) 34
AciI CCGC 3 cut(s) 401, 1133, 1520
AclWI GGATC 4 cut(s) 72, 332, 1530, 1562
AcoI YGGCCR 1 cut(s) 289
AcsI RAATTY 2 cut(s) 278, 725
AcuI CTGAAG 2 cut(s) 413, 767
AfaI GTAC 1 cut(s) 238
AfiI CCNNNNNNNGG 6 cut(s) 34, 191, 713, 799, 893, 1688
AflIII ACRYGT 2 cut(s) 298, 1659
AgeI ACCGGT 1 cut(s) 392
AjuI GAANNNNNNNTTGG 2 cut(s) 1077, 1109
AleI CACNNNNGTG 1 cut(s) 1451
Alw21I GWGCWC 1 cut(s) 1501
Alw26I GTCTC 1 cut(s) 1508
AlwI GGATC 4 cut(s) 72, 332, 1530, 1562
AlwNI CAGNNNCTG 2 cut(s) 743, 1120
Aor13HI TCCGGA 1 cut(s) 34
AoxI GGCC 2 cut(s) 289, 631
ApeKI GCWGC 4 cut(s) 758, 1226, 1397, 1433
ApoI RAATTY 2 cut(s) 278, 725
ArsI GACNNNNNNTTYG 2 cut(s) 1319, 1351
AsiGI ACCGGT 1 cut(s) 392
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 649
AspS9I GGNCC 1 cut(s) 631
BalI TGGCCA 1 cut(s) 291
BanI GGYRCC 2 cut(s) 236, 584
BbsI GAAGAC 4 cut(s) 12, 739, 743, 818
Bbv12I GWGCWC 1 cut(s) 1501
BbvI GCAGC 4 cut(s) 745, 1213, 1409, 1445
BceAI ACGGC 3 cut(s) 240, 967, 1533
BcoDI GTCTC 1 cut(s) 1508
BfmI CTRYAG 1 cut(s) 1227
BglII AGATCT 1 cut(s) 1366
BisI GCNGC 4 cut(s) 759, 1227, 1398, 1434
BlpI GCTNAGC 1 cut(s) 1536
BlsI GCNGC 4 cut(s) 760, 1228, 1399, 1435
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 5 cut(s) 45, 238, 586, 981, 1099
BmsI GCATC 2 cut(s) 1384, 1630
BpiI GAAGAC 4 cut(s) 12, 739, 743, 818
Bpu10I CCTNAGC 1 cut(s) 372
Bpu1102I GCTNAGC 1 cut(s) 1536
BpuEI CTTGAG 5 cut(s) 596, 815, 845, 1355, 1697
Bsa29I ATCGAT 1 cut(s) 1566
BsaBI GATNNNNATC 2 cut(s) 63, 1527
BsaJI CCNNGG 2 cut(s) 292, 1728
BsaWI WCCGGW 3 cut(s) 34, 392, 1081
BsaXI ACNNNNNCTCC 8 cut(s) 352, 382, 397, 427, 888, 918, 1175, 1205
Bsc4I CCNNNNNNNGG 6 cut(s) 34, 191, 713, 799, 893, 1688
Bse118I RCCGGY 1 cut(s) 392
Bse1I ACTGG 2 cut(s) 28, 223
Bse3DI GCAATG 2 cut(s) 1258, 1491
Bse8I GATNNNNATC 2 cut(s) 63, 1527
BseAI TCCGGA 1 cut(s) 34
BseCI ATCGAT 1 cut(s) 1566
BseDI CCNNGG 2 cut(s) 292, 1728
BseGI GGATG 2 cut(s) 317, 586
BseJI GATNNNNATC 2 cut(s) 63, 1527
BseLI CCNNNNNNNGG 6 cut(s) 34, 191, 713, 799, 893, 1688
BseMI GCAATG 2 cut(s) 1258, 1491
BseMII CTCAG 4 cut(s) 177, 363, 1527, 1709
BseNI ACTGG 2 cut(s) 28, 223
BseRI GAGGAG 5 cut(s) 56, 65, 472, 992, 1361
BseXI GCAGC 4 cut(s) 745, 1213, 1409, 1445
BshFI GGCC 2 cut(s) 291, 633
BshNI GGYRCC 2 cut(s) 236, 584
BshTI ACCGGT 1 cut(s) 392
BshVI ATCGAT 1 cut(s) 1566
BsiHKAI GWGCWC 1 cut(s) 1501
BsiSI CCGG 3 cut(s) 35, 393, 1082
BslFI GGGAC 3 cut(s) 191, 329, 870
BslI CCNNNNNNNGG 6 cut(s) 34, 191, 713, 799, 893, 1688
BsmAI GTCTC 1 cut(s) 1508
BsmBI CGTCTC 1 cut(s) 1508
BsmFI GGGAC 3 cut(s) 191, 329, 870
BsnI GGCC 2 cut(s) 291, 633
Bsp1286I GDGCHC 1 cut(s) 1501
Bsp13I TCCGGA 1 cut(s) 34
Bsp143I GATC 7 cut(s) 64, 126, 324, 1366, 1522, 1528, 1567
Bsp1720I GCTNAGC 1 cut(s) 1536
BspACI CCGC 3 cut(s) 401, 1133, 1520
BspANI GGCC 2 cut(s) 291, 633
BspCNI CTCAG 4 cut(s) 178, 364, 1528, 1708
BspDI ATCGAT 1 cut(s) 1566
BspEI TCCGGA 1 cut(s) 34
BspHI TCATGA 1 cut(s) 964
BspLI GGNNCC 5 cut(s) 45, 238, 586, 981, 1099
BspMAI CTGCAG 1 cut(s) 1231
BspPI GGATC 4 cut(s) 72, 332, 1530, 1562
BspT107I GGYRCC 2 cut(s) 236, 584
BsrDI GCAATG 2 cut(s) 1258, 1491
BsrFI RCCGGY 1 cut(s) 392
BsrI ACTGG 2 cut(s) 28, 223
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 2 cut(s) 292, 1728
BssMI GATC 7 cut(s) 64, 126, 324, 1366, 1522, 1528, 1567
BssNAI GTATAC 1 cut(s) 1150
BssT1I CCWWGG 2 cut(s) 292, 1728
Bst1107I GTATAC 1 cut(s) 1150
Bst4CI ACNGT 6 cut(s) 194, 622, 700, 817, 946, 1147
Bst6I CTCTTC 3 cut(s) 33, 432, 1338
BstC8I GCNNGC 5 cut(s) 378, 1122, 1231, 1402, 1406
BstDEI CTNAG 7 cut(s) 186, 372, 495, 654, 1536, 1644, 1695
BstF5I GGATG 2 cut(s) 317, 586
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 7 cut(s) 67, 129, 327, 1369, 1525, 1531, 1570
BstMAI GTCTC 1 cut(s) 1508
BstMBI GATC 7 cut(s) 64, 126, 324, 1366, 1522, 1528, 1567
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNSI RCATGY 3 cut(s) 302, 1505, 1663
BstSFI CTRYAG 1 cut(s) 1227
BstV1I GCAGC 4 cut(s) 745, 1213, 1409, 1445
BstV2I GAAGAC 4 cut(s) 12, 739, 743, 818
BstX2I RGATCY 3 cut(s) 64, 1366, 1522
BstYI RGATCY 3 cut(s) 64, 1366, 1522
BstZ17I GTATAC 1 cut(s) 1150
Bsu15I ATCGAT 1 cut(s) 1566
BsuRI GGCC 2 cut(s) 291, 633
BsuTUI ATCGAT 1 cut(s) 1566
BtgZI GCGATG 1 cut(s) 1727
BtsCI GGATG 2 cut(s) 317, 586
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 5 cut(s) 378, 1122, 1231, 1402, 1406
CaiI CAGNNNCTG 2 cut(s) 743, 1120
CciI TCATGA 1 cut(s) 964
CfoI GCGC 1 cut(s) 649
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 631
ClaI ATCGAT 1 cut(s) 1566
CseI GACGC 1 cut(s) 872
Csp6I GTAC 1 cut(s) 237
CspAI ACCGGT 1 cut(s) 392
CviAII CATG 8 cut(s) 299, 453, 670, 965, 1045, 1502, 1660, 1734
CviQI GTAC 1 cut(s) 237
DdeI CTNAG 7 cut(s) 186, 372, 495, 654, 1536, 1644, 1695
DpnI GATC 7 cut(s) 66, 128, 326, 1368, 1524, 1530, 1569
DpnII GATC 7 cut(s) 64, 126, 324, 1366, 1522, 1528, 1567
EaeI YGGCCR 1 cut(s) 289
Eam1104I CTCTTC 3 cut(s) 33, 432, 1338
EarI CTCTTC 3 cut(s) 33, 432, 1338
EciI GGCGGA 1 cut(s) 1535
Eco130I CCWWGG 2 cut(s) 292, 1728
Eco32I GATATC 1 cut(s) 1546
Eco57I CTGAAG 2 cut(s) 413, 767
EcoRV GATATC 1 cut(s) 1546
EcoT14I CCWWGG 2 cut(s) 292, 1728
ErhI CCWWGG 2 cut(s) 292, 1728
Esp3I CGTCTC 1 cut(s) 1508
FaeI CATG 8 cut(s) 302, 456, 673, 968, 1048, 1505, 1663, 1737
FalI AAGNNNNNCTT 4 cut(s) 558, 590, 724, 756
FaqI GGGAC 3 cut(s) 191, 329, 870
FatI CATG 8 cut(s) 298, 452, 669, 964, 1044, 1501, 1659, 1733
FauNDI CATATG 1 cut(s) 382
FblI GTMKAC 1 cut(s) 1149
Fnu4HI GCNGC 4 cut(s) 759, 1227, 1398, 1434
FokI GGATG 2 cut(s) 324, 593
Fsp4HI GCNGC 4 cut(s) 759, 1227, 1398, 1434
GlaI GCGC 1 cut(s) 648
GluI GCNGC 4 cut(s) 759, 1227, 1398, 1434
HaeIII GGCC 2 cut(s) 291, 633
HapII CCGG 3 cut(s) 35, 393, 1082
HgaI GACGC 1 cut(s) 872
HhaI GCGC 1 cut(s) 649
Hin1II CATG 8 cut(s) 302, 456, 673, 968, 1048, 1505, 1663, 1737
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HinfI GANTC 5 cut(s) 89, 248, 1106, 1190, 1328
HpaII CCGG 3 cut(s) 35, 393, 1082
Hpy166II GTNNAC 6 cut(s) 398, 553, 618, 926, 1150, 1446
Hpy188I TCNGA 8 cut(s) 105, 131, 417, 604, 745, 786, 1105, 1698
Hpy8I GTNNAC 6 cut(s) 398, 553, 618, 926, 1150, 1446
Hpy99I CGWCG 1 cut(s) 1343
HpyCH4III ACNGT 6 cut(s) 194, 622, 700, 817, 946, 1147
HpyCH4IV ACGT 2 cut(s) 555, 1476
HpyCH4V TGCA 6 cut(s) 211, 761, 776, 1229, 1397, 1404
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 7 cut(s) 186, 372, 495, 654, 1536, 1644, 1695
HpySE526I ACGT 2 cut(s) 555, 1476
Hsp92II CATG 8 cut(s) 302, 456, 673, 968, 1048, 1505, 1663, 1737
HspAI GCGC 1 cut(s) 647
Kpn2I TCCGGA 1 cut(s) 34
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 7 cut(s) 64, 126, 324, 1366, 1522, 1528, 1567
LmnI GCTCC 5 cut(s) 43, 100, 896, 979, 1117
Lsp1109I GCAGC 4 cut(s) 745, 1213, 1409, 1445
LweI GCATC 2 cut(s) 1384, 1630
MaeII ACGT 2 cut(s) 555, 1476
MaeIII GTNAC 4 cut(s) 194, 257, 826, 1382
MalI GATC 7 cut(s) 66, 128, 326, 1368, 1524, 1530, 1569
MboI GATC 7 cut(s) 64, 126, 324, 1366, 1522, 1528, 1567
MflI RGATCY 3 cut(s) 64, 1366, 1522
MhlI GDGCHC 1 cut(s) 1501
MlsI TGGCCA 1 cut(s) 291
MluCI AATT 6 cut(s) 278, 504, 725, 908, 1074, 1439
MluNI TGGCCA 1 cut(s) 291
MlyI GAGTC 3 cut(s) 83, 1199, 1322
MmeI TCCRAC 2 cut(s) 574, 1437
Mox20I TGGCCA 1 cut(s) 291
MroI TCCGGA 1 cut(s) 34
MscI TGGCCA 1 cut(s) 291
MseI TTAA 4 cut(s) 159, 306, 465, 849
MslI CAYNNNNRTG 1 cut(s) 1451
Msp20I TGGCCA 1 cut(s) 291
MspI CCGG 3 cut(s) 35, 393, 1082
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeI CATATG 1 cut(s) 382
NdeII GATC 7 cut(s) 64, 126, 324, 1366, 1522, 1528, 1567
NlaIII CATG 8 cut(s) 302, 456, 673, 968, 1048, 1505, 1663, 1737
NlaIV GGNNCC 5 cut(s) 45, 238, 586, 981, 1099
NmeAIII GCCGAG 1 cut(s) 550
NmuCI GTSAC 2 cut(s) 194, 257
NspI RCATGY 3 cut(s) 302, 1505, 1663
OliI CACNNNNGTG 1 cut(s) 1451
PagI TCATGA 1 cut(s) 964
PciI ACATGT 2 cut(s) 298, 1659
PfeI GAWTC 2 cut(s) 248, 1106
PflMI CCANNNNNTGG 1 cut(s) 713
PinAI ACCGGT 1 cut(s) 392
PkrI GCNGC 4 cut(s) 760, 1228, 1399, 1435
PleI GAGTC 3 cut(s) 83, 1198, 1322
PpsI GAGTC 3 cut(s) 83, 1198, 1322
PscI ACATGT 2 cut(s) 298, 1659
PspN4I GGNNCC 5 cut(s) 45, 238, 586, 981, 1099
PspPI GGNCC 1 cut(s) 631
PstI CTGCAG 1 cut(s) 1231
PstNI CAGNNNCTG 2 cut(s) 743, 1120
PsuI RGATCY 3 cut(s) 64, 1366, 1522
RsaI GTAC 1 cut(s) 238
RsaNI GTAC 1 cut(s) 237
RseI CAYNNNNRTG 1 cut(s) 1451
SaqAI TTAA 4 cut(s) 159, 306, 465, 849
SatI GCNGC 4 cut(s) 759, 1227, 1398, 1434
Sau3AI GATC 7 cut(s) 64, 126, 324, 1366, 1522, 1528, 1567
Sau96I GGNCC 1 cut(s) 631
SchI GAGTC 3 cut(s) 83, 1199, 1322
SduI GDGCHC 1 cut(s) 1501
SfaNI GCATC 2 cut(s) 1384, 1630
SfcI CTRYAG 1 cut(s) 1227
SmiMI CAYNNNNRTG 1 cut(s) 1451
SmlI CTYRAG 5 cut(s) 575, 794, 860, 1370, 1676
SmoI CTYRAG 5 cut(s) 575, 794, 860, 1370, 1676
Sse9I AATT 6 cut(s) 278, 504, 725, 908, 1074, 1439
SsiI CCGC 3 cut(s) 401, 1133, 1520
StyI CCWWGG 2 cut(s) 292, 1728
TaaI ACNGT 6 cut(s) 194, 622, 700, 817, 946, 1147
TaiI ACGT 2 cut(s) 558, 1479
TaqI TCGA 9 cut(s) 15, 251, 987, 1142, 1161, 1338, 1560, 1566, 1667
TasI AATT 6 cut(s) 278, 504, 725, 908, 1074, 1439
TfiI GAWTC 2 cut(s) 248, 1106
Tru1I TTAA 4 cut(s) 159, 306, 465, 849
Tru9I TTAA 4 cut(s) 159, 306, 465, 849
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 2 cut(s) 194, 257
TseI GCWGC 4 cut(s) 758, 1226, 1397, 1433
Tsp45I GTSAC 2 cut(s) 194, 257
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 1 cut(s) 713
XapI RAATTY 2 cut(s) 278, 725
XceI RCATGY 3 cut(s) 302, 1505, 1663
XcmI CCANNNNNNNNNTGG 1 cut(s) 1453
XmiI GTMKAC 1 cut(s) 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.