Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8161348.1

Orthogroup ID

OG0014948

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 581

Gene Structure 581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8161348.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 379 bp

atgaagaagggtgagaatgcaattttcaccataccacccgagttggcttatggcgagtctggatcccctccaactattcctcccaatgccacactccagtttgatgtggagttgctttcctggactagtgtcaaggacatatgcaaggatggcggagttataaagaaaattcttactgaaggggagaaatgggagaatccaaaagacctcgatgaagtatttgttaagtatgaggctcgacttgaagatgggactcttgtttcaaaatctgatggggtggagtttactgttgaagatggctatttctgcccagccttggcaaaagctgtgaaaacaatgaagaaaaatgaaaaggtccatttgatcgtaaaaccacaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_8

Protein Analysis

126

Amino Acids

13.97

Weight (kDa)

5.09

Isoelectric Point (pI)

24.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014948)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48570
fragaria_vesca	FvH4_4g12830
malus_domestica	MD04G1022400.v1.1
prunus_persica	Prupe.1G172600_v2.0.a1
pyrus_communis	pycom04g01940
rosa_chinensis	RchiOBHm_Chr4g0412331
rosa_laevigata	RLG00000008307
rosa_multiflora	Rmu_co8161348.1_g000001 Rmu_sc0010364.1_g000002 Rmu_sc0024446.1_g000002 Rmu_sc0041848.1_g000001
rosa_roxburghii	Rroxscaffold_5G00356460
rosa_rugosa	Rorug04G0104700
rosa_samantha	Rh4AG172300 Rh4CG183200
rosa_wichuraiana	Rw4G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	57, 70
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	198
AfiI	CCNNNNNNNGG	1 cut(s)	316
AgsI	TTSAA	3 cut(s)	245, 264, 293
AhlI	ACTAGT	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
AlwI	GGATC	2 cut(s)	57, 70
Ama87I	CYCGRG	1 cut(s)	38
ApoI	RAATTY	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	19, 23
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	355
BamHI	GGATCC	1 cut(s)	62
BccI	CCATC	4 cut(s)	143, 242, 266, 290
BciT130I	CCWGG	1 cut(s)	121
BcuI	ACTAGT	1 cut(s)	125
BfaI	CTAG	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	355
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	121
BoxI	GACNNNNGTC	1 cut(s)	128
BpmI	CTGGAG	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	154
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	62, 363
BspACI	CCGC	1 cut(s)	153
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	57, 70
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	62, 363
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	2 cut(s)	65, 366
BstMBI	GATC	2 cut(s)	62, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 306
BstNI	CCWGG	1 cut(s)	121
BstPAI	GACNNNNGTC	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	355
CspCI	CAANNNNNGTGG	2 cut(s)	24, 59
CviJI	RGCY	5 cut(s)	47, 236, 300, 314, 326
CviKI_1	RGCY	5 cut(s)	47, 236, 300, 314, 326
DpnI	GATC	2 cut(s)	64, 365
DpnII	GATC	2 cut(s)	62, 363
EciI	GGCGGA	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	355
Eco57I	CTGAAG	1 cut(s)	198
Eco88I	CYCGRG	1 cut(s)	38
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaiI	YATR	6 cut(s)	32, 51, 140, 142, 161, 231
FaqI	GGGAC	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	140
FokI	GGATG	1 cut(s)	161
FspBI	CTAG	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	314
GsuI	CTGGAG	1 cut(s)	80
HinfI	GANTC	3 cut(s)	56, 196, 253
HphI	GGTGA	2 cut(s)	19, 23
Hpy166II	GTNNAC	1 cut(s)	285
Hpy188I	TCNGA	1 cut(s)	271
Hpy188III	TCNNGA	1 cut(s)	60
Hpy8I	GTNNAC	1 cut(s)	285
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	20, 144
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 306
Kzo9I	GATC	2 cut(s)	62, 363
LpnPI	CCDG	5 cut(s)	45, 106, 110, 133, 324
MaeI	CTAG	1 cut(s)	126
MalI	GATC	2 cut(s)	64, 365
MboI	GATC	2 cut(s)	62, 363
MboII	GAAGA	4 cut(s)	16, 257, 305, 352
MflI	RGATCY	1 cut(s)	62
MluCI	AATT	2 cut(s)	21, 168
MlyI	GAGTC	2 cut(s)	65, 247
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	78, 90, 218, 226
MseI	TTAA	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	121
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	150, 306
NdeI	CATATG	1 cut(s)	140
NdeII	GATC	2 cut(s)	62, 363
NlaIV	GGNNCC	1 cut(s)	64
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	119
PleI	GAGTC	2 cut(s)	64, 247
PpsI	GAGTC	2 cut(s)	64, 247
PshAI	GACNNNNGTC	1 cut(s)	128
PsiI	TTATAA	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	2 cut(s)	62, 363
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	2 cut(s)	65, 247
ScrFI	CCNGG	1 cut(s)	121
SetI	ASST	3 cut(s)	210, 328, 357
SinI	GGWCC	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	125
Sse9I	AATT	2 cut(s)	21, 168
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	210, 238
TasI	AATT	2 cut(s)	21, 168
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TspDTI	ATGAA	4 cut(s)	17, 228, 353, 363
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	168
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.