Rmu_sc0010364.1_g000002

Peptidyl-prolyl

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010364.1
OG0014948
Physical Location & Seq
Forward (+)
7463 .. 9659
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010364.1_g000002.1.cds

Sequence Viewer

Length: 1173 bp
atggaagacgactttgatttcccaaccggcgccaaccccgaagacgttgacatggacctcccggaggaagacgacgacgcgaccagcccaggcccgctcaaggtcggcgaagagaaggagattgggaaaaatgggctgaagaagaagctgctcaagcaaggtgaagggtgggagacgcctggctccggcgacgaggttgaagttcattacactgggactttgcttgatggcaccaagtttgattccagccgtgatcgggagacgcctttcaagttcggccttggacaaggacaagtgatcaagggatgggatgagggtattaagaccatgaagaagggtgagaatgcaattttcaccataccacccgagttggcttatggcgagtctggatcccctccaactattcctcccaatgccacactccagtttgatgtggagttgctttcctggactagtgtcaaggacatatgcaaggatggcggagttataaagaaaattcttactgaaggggagaaatgggagaatccaaaagacctcgatgaagtatttgttaagtatgaggctcgacttgaagatgggactcttgtttcaaaatctgatggggtggagtttactgttgaagatggctatttctgcccagccttggcaaaagctgtgaaaacaatgaagaaaaatgaaaaggtccatttgatcgtaaaaccacaatatggatttggtgaggccggaagaccagctgctggtgaagaaggtgcagtgcctccaaatgctacccttgggataaccctagagttggtctcgtggaagacagtttcagatgttacaaaggacaagaaggtcctaaaaaaggccttaaaggagggagagggatatgagcgtcctaatgatggggcggtagttcaagtgaaacttgttgggaagttacaggacggcacaatctttatgaagaagggacatgataatgagcaatttgaattcaagatagatgaagagcaagttattgatggacttgatagagcggtgaagggcatgaagaaaggggaggtggctctggtcaccattcaaccggaatatgcttttgggtcatctgattctgcacaagaattggccattgtccctgcaaattcaactgtgtactatgaggtggagttggtctcctttgtgaaggtaagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04915 map04915
Pfam Domains
Protein Families
FKBP_C TPR_1 TPR_8

Protein Analysis

390

Amino Acids

42.73

Weight (kDa)

4.72

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014948)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48570
fragaria_vesca FvH4_4g12830
malus_domestica MD04G1022400.v1.1
prunus_persica Prupe.1G172600_v2.0.a1
pyrus_communis pycom04g01940
rosa_chinensis RchiOBHm_Chr4g0412331
rosa_laevigata RLG00000008307
rosa_multiflora Rmu_co8161348.1_g000001 Rmu_sc0010364.1_g000002 Rmu_sc0024446.1_g000002 Rmu_sc0041848.1_g000001
rosa_roxburghii Rroxscaffold_5G00356460
rosa_rugosa Rorug04G0104700
rosa_samantha Rh4AG172300 Rh4CG183200
rosa_wichuraiana Rw4G014400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 488
AasI GACNNNNNNGTC 1 cut(s) 833
AccB1I GGYRCC 2 cut(s) 29, 230
AccB7I CCANNNNNTGG 2 cut(s) 707, 737
AccBSI CCGCTC 2 cut(s) 97, 1016
AccII CGCG 1 cut(s) 80
AciI CCGC 4 cut(s) 95, 480, 890, 1016
AclWI GGATC 2 cut(s) 384, 397
AcoI YGGCCR 1 cut(s) 1104
AcsI RAATTY 3 cut(s) 495, 971, 1120
AcuI CTGAAG 2 cut(s) 158, 525
AcyI GRCGYC 3 cut(s) 30, 176, 263
AfaI GTAC 1 cut(s) 1133
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 3 cut(s) 88, 178, 446
AjuI GAANNNNNNNTTGG 2 cut(s) 1059, 1091
AluBI AGCT 3 cut(s) 148, 653, 734
AluI AGCT 3 cut(s) 148, 653, 734
Alw26I GTCTC 4 cut(s) 167, 254, 799, 1156
AlwI GGATC 2 cut(s) 384, 397
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 5 cut(s) 91, 277, 720, 846, 1104
ApeKI GCWGC 2 cut(s) 148, 734
ApoI RAATTY 3 cut(s) 495, 971, 1120
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 4 cut(s) 55, 92, 682, 835
AsuC2I CCSGG 1 cut(s) 62
AsuHPI GGTGA 7 cut(s) 173, 346, 350, 728, 752, 1030, 1045
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 3 cut(s) 55, 682, 835
BalI TGGCCA 1 cut(s) 1106
BamHI GGATCC 1 cut(s) 389
BanI GGYRCC 2 cut(s) 29, 230
BauI CACGAG 1 cut(s) 796
BbsI GAAGAC 5 cut(s) 12, 48, 75, 733, 809
BbvI GCAGC 2 cut(s) 135, 721
BccI CCATC 8 cut(s) 221, 300, 470, 569, 593, 617, 878, 995
BceAI ACGGC 2 cut(s) 234, 943
BciT130I CCWGG 3 cut(s) 90, 180, 448
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 1 cut(s) 62
BcoDI GTCTC 4 cut(s) 167, 254, 799, 1156
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 2 cut(s) 453, 785
BfoI RGCGCY 1 cut(s) 33
BisI GCNGC 2 cut(s) 149, 735
BlsI GCNGC 2 cut(s) 150, 736
Bme1390I CCNGG 4 cut(s) 62, 90, 180, 448
Bme18I GGWCC 3 cut(s) 55, 682, 835
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 4 cut(s) 55, 92, 682, 835
BmiI GGNNCC 4 cut(s) 31, 184, 232, 391
BmrFI CCNGG 4 cut(s) 62, 90, 180, 448
BmrI ACTGGG 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 222
BoxI GACNNNNGTC 1 cut(s) 455
BpiI GAAGAC 5 cut(s) 12, 48, 75, 733, 809
BplI GAGNNNNNCTC 4 cut(s) 779, 811, 1136, 1168
BpmI CTGGAG 1 cut(s) 407
BpuEI CTTGAG 2 cut(s) 83, 137
BpuMI CCSGG 1 cut(s) 62
BsaHI GRCGYC 3 cut(s) 30, 176, 263
BsaI GGTCTC 2 cut(s) 799, 1156
BsaJI CCNNGG 4 cut(s) 88, 280, 642, 772
BsaWI WCCGGW 1 cut(s) 1063
BsaXI ACNNNNNCTCC 2 cut(s) 391, 421
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 2 cut(s) 217, 424
BseBI CCWGG 3 cut(s) 90, 180, 448
BseDI CCNNGG 4 cut(s) 88, 280, 642, 772
BseGI GGATG 3 cut(s) 311, 316, 481
BseNI ACTGG 2 cut(s) 217, 424
BseXI GCAGC 2 cut(s) 135, 721
BseYI CCCAGC 1 cut(s) 637
BsgI GTGCAG 2 cut(s) 771, 1077
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 5 cut(s) 93, 279, 722, 848, 1106
BshNI GGYRCC 2 cut(s) 29, 230
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 5 cut(s) 27, 62, 186, 723, 1064
BslFI GGGAC 4 cut(s) 229, 592, 963, 1097
BsmAI GTCTC 4 cut(s) 167, 254, 799, 1156
BsmBI CGTCTC 2 cut(s) 167, 254
BsmFI GGGAC 4 cut(s) 229, 592, 963, 1097
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 5 cut(s) 93, 279, 722, 848, 1106
Bso31I GGTCTC 2 cut(s) 799, 1156
BsoBI CYCGRG 1 cut(s) 365
Bsp143I GATC 4 cut(s) 253, 297, 389, 690
BspACI CCGC 4 cut(s) 95, 480, 890, 1016
BspANI GGCC 5 cut(s) 93, 279, 722, 848, 1106
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 4 cut(s) 31, 184, 232, 391
BspPI GGATC 2 cut(s) 384, 397
BspQI GCTCTTC 1 cut(s) 981
BspT107I GGYRCC 2 cut(s) 29, 230
BspTNI GGTCTC 2 cut(s) 799, 1156
BsrBI CCGCTC 2 cut(s) 97, 1016
BsrFI RCCGGY 1 cut(s) 26
BsrI ACTGG 2 cut(s) 217, 424
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 4 cut(s) 88, 280, 642, 772
BssMI GATC 4 cut(s) 253, 297, 389, 690
BssNI GRCGYC 3 cut(s) 30, 176, 263
BssSI CACGAG 1 cut(s) 796
BssT1I CCWWGG 3 cut(s) 280, 642, 772
Bst2BI CACGAG 1 cut(s) 796
Bst2UI CCWGG 3 cut(s) 90, 180, 448
Bst4CI ACNGT 3 cut(s) 616, 808, 1129
Bst6I CTCTTC 2 cut(s) 105, 981
BstACI GRCGYC 3 cut(s) 30, 176, 263
BstC8I GCNNGC 1 cut(s) 95
BstEII GGTNACC 1 cut(s) 1051
BstENI CCTNNNNNAGG 2 cut(s) 62, 842
BstF5I GGATG 3 cut(s) 311, 316, 481
BstFNI CGCG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 4 cut(s) 256, 300, 392, 693
BstMAI GTCTC 4 cut(s) 167, 254, 799, 1156
BstMBI GATC 4 cut(s) 253, 297, 389, 690
BstMWI GCNNNNNNNGC 3 cut(s) 154, 477, 633
BstNI CCWGG 3 cut(s) 90, 180, 448
BstPAI GACNNNNGTC 1 cut(s) 455
BstPI GGTNACC 1 cut(s) 1051
BstSCI CCNGG 4 cut(s) 60, 88, 178, 446
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 2 cut(s) 135, 721
BstV2I GAAGAC 5 cut(s) 12, 48, 75, 733, 809
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 5 cut(s) 93, 279, 722, 848, 1106
BtsCI GGATG 3 cut(s) 311, 316, 481
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 2 cut(s) 210, 759
Cac8I GCNNGC 1 cut(s) 95
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 4 cut(s) 55, 92, 682, 835
CseI GACGC 4 cut(s) 86, 184, 271, 863
Csp6I GTAC 1 cut(s) 1132
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 4 cut(s) 52, 328, 953, 1027
CviQI GTAC 1 cut(s) 1132
DinI GGCGCC 1 cut(s) 31
DpnI GATC 4 cut(s) 255, 299, 391, 692
DpnII GATC 4 cut(s) 253, 297, 389, 690
DrdI GACNNNNNNGTC 1 cut(s) 833
DseDI GACNNNNNNGTC 1 cut(s) 833
EaeI YGGCCR 1 cut(s) 1104
Eam1104I CTCTTC 2 cut(s) 105, 981
EarI CTCTTC 2 cut(s) 105, 981
EciI GGCGGA 1 cut(s) 495
Eco130I CCWWGG 3 cut(s) 280, 642, 772
Eco147I AGGCCT 1 cut(s) 848
Eco31I GGTCTC 2 cut(s) 799, 1156
Eco47I GGWCC 3 cut(s) 55, 682, 835
Eco57I CTGAAG 2 cut(s) 158, 525
Eco88I CYCGRG 1 cut(s) 365
Eco91I GGTNACC 1 cut(s) 1051
EcoNI CCTNNNNNAGG 2 cut(s) 62, 842
EcoO109I RGGNCCY 1 cut(s) 835
EcoO65I GGTNACC 1 cut(s) 1051
EcoRI GAATTC 1 cut(s) 971
EcoRII CCWGG 3 cut(s) 88, 178, 446
EcoT14I CCWWGG 3 cut(s) 280, 642, 772
EgeI GGCGCC 1 cut(s) 31
EheI GGCGCC 1 cut(s) 31
ErhI CCWWGG 3 cut(s) 280, 642, 772
Esp3I CGTCTC 2 cut(s) 167, 254
FaeI CATG 4 cut(s) 55, 331, 956, 1030
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 4 cut(s) 229, 592, 963, 1097
FatI CATG 4 cut(s) 51, 327, 952, 1026
FauI CCCGC 1 cut(s) 102
FauNDI CATATG 1 cut(s) 467
FbaI TGATCA 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 149, 735
FokI GGATG 3 cut(s) 318, 323, 488
Fsp4HI GCNGC 2 cut(s) 149, 735
FspBI CTAG 2 cut(s) 453, 785
GlaI GCGC 1 cut(s) 31
GluI GCNGC 2 cut(s) 149, 735
GsaI CCCAGC 1 cut(s) 641
GsuI CTGGAG 1 cut(s) 407
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 5 cut(s) 93, 279, 722, 848, 1106
HapII CCGG 5 cut(s) 27, 62, 186, 723, 1064
HgaI GACGC 4 cut(s) 86, 184, 271, 863
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 3 cut(s) 30, 176, 263
Hin1II CATG 4 cut(s) 55, 331, 956, 1030
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 5 cut(s) 242, 383, 523, 580, 1088
HpaII CCGG 5 cut(s) 27, 62, 186, 723, 1064
HphI GGTGA 7 cut(s) 173, 346, 350, 728, 752, 1030, 1045
Hpy166II GTNNAC 3 cut(s) 49, 612, 1132
Hpy188I TCNGA 3 cut(s) 598, 814, 1087
Hpy188III TCNNGA 3 cut(s) 257, 387, 976
Hpy8I GTNNAC 3 cut(s) 49, 612, 1132
Hpy99I CGWCG 3 cut(s) 77, 80, 194
HpyAV CCTTC 9 cut(s) 109, 158, 328, 500, 740, 826, 940, 1015, 1156
HpyCH4III ACNGT 3 cut(s) 616, 808, 1129
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 5 cut(s) 347, 471, 752, 1094, 1118
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 477, 633
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 3 cut(s) 30, 176, 263
Hsp92II CATG 4 cut(s) 55, 331, 956, 1030
HspAI GCGC 1 cut(s) 30
KasI GGCGCC 1 cut(s) 29
Ksp22I TGATCA 1 cut(s) 297
Kzo9I GATC 4 cut(s) 253, 297, 389, 690
LguI GCTCTTC 1 cut(s) 981
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 2 cut(s) 135, 721
MaeI CTAG 2 cut(s) 453, 785
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 3 cut(s) 817, 918, 1051
MalI GATC 4 cut(s) 255, 299, 391, 692
MbiI CCGCTC 2 cut(s) 97, 1016
MboI GATC 4 cut(s) 253, 297, 389, 690
MflI RGATCY 1 cut(s) 389
MlsI TGGCCA 1 cut(s) 1106
MluCI AATT 6 cut(s) 348, 495, 965, 971, 1100, 1120
MluNI TGGCCA 1 cut(s) 1106
Mly113I GGCGCC 1 cut(s) 30
MlyI GAGTC 2 cut(s) 392, 574
MmeI TCCRAC 1 cut(s) 422
Mox20I TGGCCA 1 cut(s) 1106
MscI TGGCCA 1 cut(s) 1106
MseI TTAA 3 cut(s) 321, 552, 851
MslI CAYNNNNRTG 1 cut(s) 957
Msp20I TGGCCA 1 cut(s) 1106
MspA1I CMGCKG 1 cut(s) 734
MspI CCGG 5 cut(s) 27, 62, 186, 723, 1064
MspR9I CCNGG 4 cut(s) 62, 90, 180, 448
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 3 cut(s) 90, 180, 448
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 154, 477, 633
NarI GGCGCC 1 cut(s) 30
NciI CCSGG 1 cut(s) 62
NdeI CATATG 1 cut(s) 467
NdeII GATC 4 cut(s) 253, 297, 389, 690
NlaIII CATG 4 cut(s) 55, 331, 956, 1030
NlaIV GGNNCC 4 cut(s) 31, 184, 232, 391
NmuCI GTSAC 1 cut(s) 1051
PceI AGGCCT 1 cut(s) 848
PciSI GCTCTTC 1 cut(s) 981
PctI GAATGC 1 cut(s) 349
PfeI GAWTC 3 cut(s) 242, 523, 1088
PflMI CCANNNNNTGG 2 cut(s) 707, 737
PfoI TCCNGGA 2 cut(s) 60, 446
PkrI GCNGC 2 cut(s) 150, 736
PleI GAGTC 2 cut(s) 391, 574
PluTI GGCGCC 1 cut(s) 33
PpsI GAGTC 2 cut(s) 391, 574
PpuMI RGGWCCY 1 cut(s) 835
PshAI GACNNNNGTC 1 cut(s) 455
PsiI TTATAA 1 cut(s) 488
Psp5II RGGWCCY 1 cut(s) 835
Psp6I CCWGG 3 cut(s) 88, 178, 446
PspEI GGTNACC 1 cut(s) 1051
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 3 cut(s) 88, 178, 446
PspN4I GGNNCC 4 cut(s) 31, 184, 232, 391
PspPI GGNCC 4 cut(s) 55, 92, 682, 835
PspPPI RGGWCCY 1 cut(s) 835
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 1 cut(s) 1133
RsaNI GTAC 1 cut(s) 1132
RseI CAYNNNNRTG 1 cut(s) 957
SapI GCTCTTC 1 cut(s) 981
SaqAI TTAA 3 cut(s) 321, 552, 851
SatI GCNGC 2 cut(s) 149, 735
Sau3AI GATC 4 cut(s) 253, 297, 389, 690
Sau96I GGNCC 4 cut(s) 55, 92, 682, 835
SchI GAGTC 2 cut(s) 392, 574
ScrFI CCNGG 4 cut(s) 62, 90, 180, 448
SfoI GGCGCC 1 cut(s) 31
SinI GGWCC 3 cut(s) 55, 682, 835
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 2 cut(s) 98, 152
SmoI CTYRAG 2 cut(s) 98, 152
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 6 cut(s) 348, 495, 965, 971, 1100, 1120
SseBI AGGCCT 1 cut(s) 848
SsiI CCGC 4 cut(s) 95, 480, 890, 1016
SspDI GGCGCC 1 cut(s) 29
SspMI CTAG 2 cut(s) 453, 785
StuI AGGCCT 1 cut(s) 848
StyD4I CCNGG 4 cut(s) 60, 88, 178, 446
StyI CCWWGG 3 cut(s) 280, 642, 772
TaaI ACNGT 3 cut(s) 616, 808, 1129
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 537, 565
TasI AATT 6 cut(s) 348, 495, 965, 971, 1100, 1120
TatI WGTACW 1 cut(s) 1131
TfiI GAWTC 3 cut(s) 242, 523, 1088
Tru1I TTAA 3 cut(s) 321, 552, 851
Tru9I TTAA 3 cut(s) 321, 552, 851
TscAI CASTG 2 cut(s) 217, 759
TseFI GTSAC 1 cut(s) 1051
TseI GCWGC 2 cut(s) 148, 734
Tsp45I GTSAC 1 cut(s) 1051
TspDTI ATGAA 8 cut(s) 194, 344, 555, 680, 690, 956, 999, 1043
TspRI CASTG 2 cut(s) 217, 759
Van91I CCANNNNNTGG 2 cut(s) 707, 737
VpaK11BI GGWCC 3 cut(s) 55, 682, 835
XagI CCTNNNNNAGG 2 cut(s) 62, 842
XapI RAATTY 3 cut(s) 495, 971, 1120
XspI CTAG 2 cut(s) 453, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.