Rmu_sc0041848.1_g000001

Peptidyl-prolyl

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041848.1
OG0014948
Physical Location & Seq
Forward (+)
1 .. 2403
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041848.1_g000001.1.cds

Sequence Viewer

Length: 1350 bp
gacaagtgatcaagggatgggatgagggtattaagaccatgaagaagggtgagaatgcaattttcaccataccacccgagttggcttatggcgagtctggatcccctccaactattcctcccaatgccacactccagtttgatgtggagttgctttcctggactagtgtcaaggacatatgcaaggatggcggatatgaggctcgacttgaagatgggactcttgtttcaaaatctgatggggtggagtttactgttgaagatggctatttctgcccagccttggcaaaagctgtgaaaacaatgaagaaaaatgaaaaggtccatttgatcgtaaaaccacaatatggatttggtgaggccggaagaccagctgctggtgaagaaggtgcagtgcctccaaatgctacccttgggataaccctagagttggtctcgtggaagacagtttcagatgttacaaaggacaagaaggtcctaaaaaaggccttaaaggagggagagggatatgagcgtcctaatgatggggcggtagttcaagtgaaacttgttgggaagttacaggatggcacaatctttacgaagaagggacatgataatgagccatttgaattcaagatagatgaagagcaagttattgatggacttgatagagcggtgaagggcatgaagaaaggggaggtggctctggtcaccattcaaccggaatatgcttttgggtcatctgattctgcacaagaattggccattgtccctgcaaattcaactgtgtactatgaggtggagttggtctcctttgtgaaggagaaggaatcttgggacatgaacacacaagaaaaaattgaagcggctagtaagaagaaggaagaaggcaacgctctctttaaggctgccaaatatgaaagggcctcaaagagatatgaaaaggctgtgagatatatagattatgactcaagcttcagtgatgaagaaaagcagcaggcgaaggtactgaagattacctgcaatctgaatgatgctgcatgcaagcttaaacttaaacagtacaaagatgctgaaaaactctgcacaaaggtattctttgctgttgtgaacttgatactggttctggaacttgacagtcggaatgtgaaagcattgtacagaagggcacaagcctatatccagcttgttgatttggacttggcagagctggacatcaagaaggcactggagatagacccaaacaataaggatgtgaaacaggagtacaagcttctgaaggagaaagttagagagtacaacaagaaggatgcacagttctatggcaatatatttgcaaaaatgcacaagcacgacccagttccaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04915 map04915
Pfam Domains
Protein Families
FKBP_C TPR_1 TPR_8

Protein Analysis

449

Amino Acids

50.29

Weight (kDa)

6.08

Isoelectric Point (pI)

29.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014948)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48570
fragaria_vesca FvH4_4g12830
malus_domestica MD04G1022400.v1.1
prunus_persica Prupe.1G172600_v2.0.a1
pyrus_communis pycom04g01940
rosa_chinensis RchiOBHm_Chr4g0412331
rosa_laevigata RLG00000008307
rosa_multiflora Rmu_co8161348.1_g000001 Rmu_sc0010364.1_g000002 Rmu_sc0024446.1_g000002 Rmu_sc0041848.1_g000001
rosa_roxburghii Rroxscaffold_5G00356460
rosa_rugosa Rorug04G0104700
rosa_samantha Rh4AG172300 Rh4CG183200
rosa_wichuraiana Rw4G014400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 472
Acc36I ACCTGC 1 cut(s) 1009
AccB7I CCANNNNNTGG 2 cut(s) 346, 376
AccBSI CCGCTC 1 cut(s) 655
AciI CCGC 4 cut(s) 191, 529, 655, 847
AclWI GGATC 2 cut(s) 95, 108
AcoI YGGCCR 1 cut(s) 743
AcsI RAATTY 2 cut(s) 610, 759
AcuI CTGAAG 3 cut(s) 942, 1012, 1279
AfaI GTAC 6 cut(s) 772, 989, 1045, 1141, 1249, 1279
AfiI CCNNNNNNNGG 6 cut(s) 282, 346, 376, 429, 483, 523
AgsI TTSAA 9 cut(s) 211, 230, 259, 538, 610, 615, 700, 764, 844
AhlI ACTAGT 1 cut(s) 163
AjnI CCWGG 1 cut(s) 157
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
AloI GAACNNNNNNTCC 2 cut(s) 1282, 1314
AluBI AGCT 7 cut(s) 292, 373, 956, 1029, 1167, 1191, 1254
AluI AGCT 7 cut(s) 292, 373, 956, 1029, 1167, 1191, 1254
Alw26I GTCTC 2 cut(s) 438, 795
AlwI GGATC 2 cut(s) 95, 108
AlwNI CAGNNNCTG 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 4 cut(s) 359, 485, 743, 905
ApeKI GCWGC 4 cut(s) 373, 889, 975, 1018
ApoI RAATTY 2 cut(s) 610, 759
AspS9I GGNCC 3 cut(s) 321, 474, 905
AsuHPI GGTGA 6 cut(s) 57, 61, 367, 391, 669, 684
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 2 cut(s) 321, 474
BaeGI GKGCMC 1 cut(s) 1152
BalI TGGCCA 1 cut(s) 745
BamHI GGATCC 1 cut(s) 100
BauI CACGAG 1 cut(s) 435
BbsI GAAGAC 2 cut(s) 372, 448
BbvI GCAGC 4 cut(s) 360, 876, 987, 1005
BccI CCATC 8 cut(s) 11, 181, 208, 232, 256, 517, 559, 634
BciT130I CCWGG 1 cut(s) 159
BclI TGATCA 1 cut(s) 8
BcoDI GTCTC 2 cut(s) 438, 795
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 3 cut(s) 164, 424, 851
BfuAI ACCTGC 1 cut(s) 1009
BisI GCNGC 5 cut(s) 374, 848, 890, 976, 1019
BlsI GCNGC 5 cut(s) 375, 849, 891, 977, 1020
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 2 cut(s) 321, 474
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 3 cut(s) 321, 474, 905
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 159
BmrI ACTGGG 1 cut(s) 1333
BmsI GCATC 3 cut(s) 1005, 1041, 1281
BmuI ACTGGG 1 cut(s) 1333
BoxI GACNNNNGTC 1 cut(s) 166
BpiI GAAGAC 2 cut(s) 372, 448
BplI GAGNNNNNCTC 4 cut(s) 418, 450, 775, 807
BpmI CTGGAG 2 cut(s) 118, 1231
BpuEI CTTGAG 1 cut(s) 936
BsaI GGTCTC 2 cut(s) 438, 795
BsaJI CCNNGG 2 cut(s) 281, 411
BsaWI WCCGGW 1 cut(s) 702
BsaXI ACNNNNNCTCC 2 cut(s) 102, 132
Bsc4I CCNNNNNNNGG 6 cut(s) 282, 346, 376, 429, 483, 523
Bse1I ACTGG 4 cut(s) 135, 1106, 1214, 1339
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 281, 411
BseGI GGATG 6 cut(s) 22, 27, 192, 570, 1239, 1296
BseLI CCNNNNNNNGG 6 cut(s) 282, 346, 376, 429, 483, 523
BseNI ACTGG 4 cut(s) 135, 1106, 1214, 1339
BseSI GKGCMC 1 cut(s) 1152
BseXI GCAGC 4 cut(s) 360, 876, 987, 1005
BseYI CCCAGC 1 cut(s) 276
BsgI GTGCAG 3 cut(s) 410, 716, 1050
BshFI GGCC 4 cut(s) 361, 487, 745, 907
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 2 cut(s) 362, 703
BslFI GGGAC 4 cut(s) 231, 602, 736, 832
BslI CCNNNNNNNGG 6 cut(s) 282, 346, 376, 429, 483, 523
BsmAI GTCTC 2 cut(s) 438, 795
BsmFI GGGAC 4 cut(s) 231, 602, 736, 832
BsmI GAATGC 1 cut(s) 60
BsnI GGCC 4 cut(s) 361, 487, 745, 907
Bso31I GGTCTC 2 cut(s) 438, 795
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 1152
Bsp1407I TGTACA 1 cut(s) 1139
Bsp143I GATC 3 cut(s) 8, 100, 329
BspACI CCGC 4 cut(s) 191, 529, 655, 847
BspANI GGCC 4 cut(s) 361, 487, 745, 907
BspLI GGNNCC 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 1009
BspPI GGATC 2 cut(s) 95, 108
BspQI GCTCTTC 1 cut(s) 620
BspTNI GGTCTC 2 cut(s) 438, 795
BsrBI CCGCTC 1 cut(s) 655
BsrGI TGTACA 1 cut(s) 1139
BsrI ACTGG 4 cut(s) 135, 1106, 1214, 1339
BssECI CCNNGG 2 cut(s) 281, 411
BssMI GATC 3 cut(s) 8, 100, 329
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 281, 411
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 6 cut(s) 255, 447, 768, 1043, 1120, 1298
Bst6I CTCTTC 1 cut(s) 620
BstAUI TGTACA 1 cut(s) 1139
BstC8I GCNNGC 3 cut(s) 980, 1023, 1027
BstEII GGTNACC 1 cut(s) 690
BstENI CCTNNNNNAGG 1 cut(s) 481
BstF5I GGATG 6 cut(s) 22, 27, 192, 570, 1239, 1296
BstKTI GATC 3 cut(s) 11, 103, 332
BstMAI GTCTC 2 cut(s) 438, 795
BstMBI GATC 3 cut(s) 8, 100, 329
BstMWI GCNNNNNNNGC 2 cut(s) 188, 272
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 1025
BstPAI GACNNNNGTC 1 cut(s) 166
BstPI GGTNACC 1 cut(s) 690
BstSCI CCNGG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 1152
BstV1I GCAGC 4 cut(s) 360, 876, 987, 1005
BstV2I GAAGAC 2 cut(s) 372, 448
BstX2I RGATCY 1 cut(s) 100
BstYI RGATCY 1 cut(s) 100
BsuRI GGCC 4 cut(s) 361, 487, 745, 907
BtsCI GGATG 6 cut(s) 22, 27, 192, 570, 1239, 1296
BtsI GCAGTG 1 cut(s) 398
BtsIMutI CAGTG 3 cut(s) 398, 966, 1207
BveI ACCTGC 1 cut(s) 1009
Cac8I GCNNGC 3 cut(s) 980, 1023, 1027
CaiI CAGNNNCTG 1 cut(s) 376
Cfr13I GGNCC 3 cut(s) 321, 474, 905
CseI GACGC 1 cut(s) 502
Csp6I GTAC 6 cut(s) 771, 988, 1044, 1140, 1248, 1278
CspCI CAANNNNNGTGG 2 cut(s) 62, 97
CviAII CATG 5 cut(s) 39, 592, 666, 822, 1022
CviQI GTAC 6 cut(s) 771, 988, 1044, 1140, 1248, 1278
DpnI GATC 3 cut(s) 10, 102, 331
DpnII GATC 3 cut(s) 8, 100, 329
DrdI GACNNNNNNGTC 1 cut(s) 472
DseDI GACNNNNNNGTC 1 cut(s) 472
EaeI YGGCCR 1 cut(s) 743
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
EciI GGCGGA 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 281, 411
Eco147I AGGCCT 1 cut(s) 487
Eco31I GGTCTC 2 cut(s) 438, 795
Eco47I GGWCC 2 cut(s) 321, 474
Eco57I CTGAAG 3 cut(s) 942, 1012, 1279
Eco88I CYCGRG 1 cut(s) 76
Eco91I GGTNACC 1 cut(s) 690
EcoNI CCTNNNNNAGG 1 cut(s) 481
EcoO109I RGGNCCY 2 cut(s) 474, 905
EcoO65I GGTNACC 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 2 cut(s) 281, 411
ErhI CCWWGG 2 cut(s) 281, 411
FaeI CATG 5 cut(s) 42, 595, 669, 825, 1025
FalI AAGNNNNNCTT 4 cut(s) 530, 562, 1063, 1095
FaqI GGGAC 4 cut(s) 231, 602, 736, 832
FatI CATG 5 cut(s) 38, 591, 665, 821, 1021
FauNDI CATATG 1 cut(s) 178
FbaI TGATCA 1 cut(s) 8
Fnu4HI GCNGC 5 cut(s) 374, 848, 890, 976, 1019
FokI GGATG 6 cut(s) 29, 34, 199, 577, 1246, 1303
Fsp4HI GCNGC 5 cut(s) 374, 848, 890, 976, 1019
FspBI CTAG 3 cut(s) 164, 424, 851
GluI GCNGC 5 cut(s) 374, 848, 890, 976, 1019
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 2 cut(s) 118, 1231
HaeIII GGCC 4 cut(s) 361, 487, 745, 907
HapII CCGG 2 cut(s) 362, 703
HgaI GACGC 1 cut(s) 502
Hin1II CATG 5 cut(s) 42, 595, 669, 825, 1025
HindIII AAGCTT 3 cut(s) 954, 1027, 1252
HinfI GANTC 5 cut(s) 94, 219, 727, 811, 949
HpaII CCGG 2 cut(s) 362, 703
HphI GGTGA 6 cut(s) 57, 61, 367, 391, 669, 684
Hpy166II GTNNAC 3 cut(s) 251, 771, 1092
Hpy188I TCNGA 6 cut(s) 237, 453, 726, 1010, 1124, 1259
Hpy188III TCNNGA 4 cut(s) 98, 615, 1108, 1200
Hpy8I GTNNAC 3 cut(s) 251, 771, 1092
HpyCH4III ACNGT 6 cut(s) 255, 447, 768, 1043, 1120, 1298
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 272
Hsp92II CATG 5 cut(s) 42, 595, 669, 825, 1025
Ksp22I TGATCA 1 cut(s) 8
Kzo9I GATC 3 cut(s) 8, 100, 329
LguI GCTCTTC 1 cut(s) 620
Lsp1109I GCAGC 4 cut(s) 360, 876, 987, 1005
LweI GCATC 3 cut(s) 1005, 1041, 1281
MaeI CTAG 3 cut(s) 164, 424, 851
MaeIII GTNAC 3 cut(s) 456, 557, 690
MalI GATC 3 cut(s) 10, 102, 331
MbiI CCGCTC 1 cut(s) 655
MboI GATC 3 cut(s) 8, 100, 329
MflI RGATCY 1 cut(s) 100
MhlI GDGCHC 1 cut(s) 1152
MlsI TGGCCA 1 cut(s) 745
MluCI AATT 5 cut(s) 59, 610, 739, 759, 839
MluNI TGGCCA 1 cut(s) 745
MlyI GAGTC 3 cut(s) 103, 213, 943
MmeI TCCRAC 2 cut(s) 133, 1102
Mox20I TGGCCA 1 cut(s) 745
MscI TGGCCA 1 cut(s) 745
MseI TTAA 5 cut(s) 32, 490, 884, 1031, 1037
MslI CAYNNNNRTG 1 cut(s) 596
Msp20I TGGCCA 1 cut(s) 745
MspA1I CMGCKG 1 cut(s) 373
MspI CCGG 2 cut(s) 362, 703
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 60
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 188, 272
NdeI CATATG 1 cut(s) 178
NdeII GATC 3 cut(s) 8, 100, 329
NlaIII CATG 5 cut(s) 42, 595, 669, 825, 1025
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 690
NspI RCATGY 1 cut(s) 1025
PaeI GCATGC 1 cut(s) 1025
PceI AGGCCT 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 620
PctI GAATGC 1 cut(s) 60
PfeI GAWTC 2 cut(s) 727, 811
PflMI CCANNNNNTGG 2 cut(s) 346, 376
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 5 cut(s) 375, 849, 891, 977, 1020
PleI GAGTC 3 cut(s) 102, 213, 943
PpsI GAGTC 3 cut(s) 102, 213, 943
PpuMI RGGWCCY 1 cut(s) 474
PshAI GACNNNNGTC 1 cut(s) 166
Psp5II RGGWCCY 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 157
PspEI GGTNACC 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 3 cut(s) 321, 474, 905
PspPPI RGGWCCY 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 100
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 6 cut(s) 772, 989, 1045, 1141, 1249, 1279
RsaNI GTAC 6 cut(s) 771, 988, 1044, 1140, 1248, 1278
RseI CAYNNNNRTG 1 cut(s) 596
SapI GCTCTTC 1 cut(s) 620
SaqAI TTAA 5 cut(s) 32, 490, 884, 1031, 1037
SatI GCNGC 5 cut(s) 374, 848, 890, 976, 1019
Sau3AI GATC 3 cut(s) 8, 100, 329
Sau96I GGNCC 3 cut(s) 321, 474, 905
SchI GAGTC 3 cut(s) 103, 213, 943
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 1152
SfaNI GCATC 3 cut(s) 1005, 1041, 1281
SinI GGWCC 2 cut(s) 321, 474
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 951
SmoI CTYRAG 1 cut(s) 951
SpeI ACTAGT 1 cut(s) 163
SphI GCATGC 1 cut(s) 1025
Sse9I AATT 5 cut(s) 59, 610, 739, 759, 839
SseBI AGGCCT 1 cut(s) 487
SsiI CCGC 4 cut(s) 191, 529, 655, 847
SspMI CTAG 3 cut(s) 164, 424, 851
StuI AGGCCT 1 cut(s) 487
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 2 cut(s) 281, 411
TaaI ACNGT 6 cut(s) 255, 447, 768, 1043, 1120, 1298
TaqI TCGA 1 cut(s) 204
TasI AATT 5 cut(s) 59, 610, 739, 759, 839
TatI WGTACW 5 cut(s) 770, 1043, 1139, 1247, 1277
TauI GCSGC 1 cut(s) 850
TfiI GAWTC 2 cut(s) 727, 811
Tru1I TTAA 5 cut(s) 32, 490, 884, 1031, 1037
Tru9I TTAA 5 cut(s) 32, 490, 884, 1031, 1037
TscAI CASTG 3 cut(s) 398, 966, 1214
TseFI GTSAC 1 cut(s) 690
TseI GCWGC 4 cut(s) 373, 889, 975, 1018
Tsp45I GTSAC 1 cut(s) 690
TspDTI ATGAA 9 cut(s) 55, 319, 329, 638, 682, 838, 914, 935, 980
TspRI CASTG 3 cut(s) 398, 966, 1214
Van91I CCANNNNNTGG 2 cut(s) 346, 376
VpaK11BI GGWCC 2 cut(s) 321, 474
XagI CCTNNNNNAGG 1 cut(s) 481
XapI RAATTY 2 cut(s) 610, 759
XceI RCATGY 1 cut(s) 1025
XspI CTAG 3 cut(s) 164, 424, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.