Rorug04G0104700

Ubiquitin associated domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0008415
Physical Location & Seq
Reverse (-)
16243821 .. 16249783
5963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0104700.1

Sequence Viewer

Length: 1848 bp
ATGCTTAGACCCAAAGCCCCTTCACACCTTATTCCCCGCCAAATCCCTTTTGAAAATCTCAATCCCCATACCCCAAACCAATTCCTATCTCTCTCGGGAAAGCTCATATACCTCTTGAAACAATGCGTCTCCACCAAAGAGCTGAAACAAATCCACAGCCAAATGCTCATAAACTCCATACACAAACCCAACTTCCTCCTCCCCAAAATCATAGACCTCAAAGACTTCACCTACGCCTCCACCCTCTTCTCCCACATCCCCGAACCCAACGGCTACGCTTTCAACGTCATGCTCCGTGGCCTAACCACCACTTGGCAAAAGTACCCACTTACTCTTCAACTCTATTACCGAATGAAGTCTCTGGGTGTGATGCCGGATAATTTCACCTACCCATTTCTCTTCATTGCGTGTTGGAATCTCTCGGAGCTTAATCATGGCCGTGCAGCACATTCGTCTGTGTTGAAGACCGGGTTGGATGGTGATGGTCACGTGACTCACTCTCTGATCACAATGTACTCCATGTGTGGGGAACTGGGTTATGCACGGAAGGTGTTCGATGAAATTCCCCAGAGAGATTCCGTGTCGTGGAACTCGATGATTTCTGGGTATACGAAGATGGGGCGTGCAGGGGATGCGGTGGGGTTGTTTGGGGAGATGAGGGAGGCTGGATTTGAGCTGAATGAGATGACTCTGGTGAGTGTTCTCGGGGCGTGCGGGGACCTTGGGGATTTGAGCTTGGGGAGGTGGGTGGAGGATTTTGTTGTTGAGAAAAAGTTGCAGCTGAATTCTTATTTGGGGTCTGCTTTGATTGGTATGTATGGAAAGTGTGGTGATTTGTGTTCGGCAAGGAGGGTGTTTGACAGTATGAAGAAAAAGGATCGCGTCACTTGGAATGCCATGATTACTGGGTATGCTCAAAACGGAATGTCAGATGAAGCAATGGTGCTTTTTGATGGCATGAAAGAAGCAGGTGTTATCCCTGATAAAATCACACTGGTTGGAATGTTGTCTGCATGTGCTGCAATTGGTGCCCTAGATTTGGGGAGATGGATTGACAAATACGCATCTGAAAGGGACTTCCAACATGACATTTATGTTGCTACTGCATTAGTTGATATGTATGCTAAGTGTGGCAGCTTAGCCAATGCTCTAAGAGTTTTTGAAGACATGCCCCAGAAAAATGAGGTTTCTTGGAATGCCATGATATCTGCCCTTGCTTTCCATGGGAGAGCCCATGAAGCAATATCCCTATTTGAGCGTATGACAGAAGAAGTTGGGGCTGCTCGGCCAAATGACATCACGTTTGTCGCAGTACTTTCTGCGTGTGTTCATGTTGGACTAGTCGATGAGGGTCGTCGATTGTTTGATTTAATGAGCTCATCATTTGGGCTGGTTCCAAAAGTAGAGCATTATTCTTGCATGGTTGACCTTTTGTCACGTGCAGGAGGCGTACATGAAGCTTGGGATTTCATCAAGAAAATGCCTGAAAAACCAGATGAAGTTACACTGGGAGCGTTACTTGGTGCCTGTCGGAAATGTGGAAATGTAGATATCACTGAACAGGTAGTGCAGCTGCTTCTAGAATTGGAGCCTTCAAACTCCGGAAACTATGTTATCTCATCAAAGATCTATGCGGGCTTAAAAATGTGGGATGACTCAGCAAGGATGAGAGTGTTGATGAGACAAAGGGGTGTCAGCAAGACTCCTGGCTGTAGCTGGATTGAGAAAGAGAATCAACTTCATGAGTTTCACGCCGGTGATAATTTAGAAGAGATCTCTCAAGTACTTAAAGTATTATATGAGGATTTGAAGGATGAAGGTTACATACCAAACATTAATGCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

615

Amino Acids

68.66

Weight (kDa)

6.04

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 192 - 238 1.4e-09 PPR repeat family
PPR PF01535 194 - 224 5.7e-09 PPR repeat
PPR_2 PF13041 293 - 340 2.5e-12 PPR repeat family
PPR_1 PF12854 293 - 321 1.5e-06 PPR repeat
PPR PF01535 295 - 325 4.4e-10 PPR repeat
PPR_2 PF13041 394 - 443 4.9e-08 PPR repeat family
PPR PF01535 396 - 423 3.3e-07 PPR repeat
E_motif PF20431 515 - 575 1e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 959
Acc36I ACCTGC 1 cut(s) 959
AccB1I GGYRCC 2 cut(s) 1028, 1523
AccB7I CCANNNNNTGG 1 cut(s) 312
AccI GTMKAC 1 cut(s) 608
AccII CGCG 1 cut(s) 882
AccIII TCCGGA 1 cut(s) 1601
AciI CCGC 4 cut(s) 37, 635, 714, 1634
AclWI GGATC 1 cut(s) 885
AcoI YGGCCR 2 cut(s) 436, 1286
AcsI RAATTY 2 cut(s) 561, 784
AcvI CACGTG 2 cut(s) 490, 1439
AfaI GTAC 5 cut(s) 323, 515, 1314, 1452, 1785
AfiI CCNNNNNNNGG 4 cut(s) 312, 525, 585, 1039
AgsI TTSAA 8 cut(s) 53, 118, 283, 338, 463, 1163, 1596, 1810
AhdI GACNNNNNGTC 1 cut(s) 1432
AhlI ACTAGT 1 cut(s) 1339
AjnI CCWGG 1 cut(s) 1705
AjuI GAANNNNNNNTTGG 4 cut(s) 455, 487, 776, 808
AleI CACNNNNGTG 1 cut(s) 1755
Alw21I GWGCWC 1 cut(s) 1379
Alw26I GTCTC 3 cut(s) 133, 363, 1675
AlwI GGATC 1 cut(s) 885
Ama87I CYCGRG 2 cut(s) 94, 704
Aor13HI TCCGGA 1 cut(s) 1601
AoxI GGCC 3 cut(s) 298, 436, 1286
ApeKI GCWGC 7 cut(s) 443, 778, 1019, 1134, 1280, 1570, 1573
ApoI RAATTY 2 cut(s) 561, 784
ArsI GACNNNNNNTTYG 2 cut(s) 1286, 1318
AseI ATTAAT 1 cut(s) 1836
Asp700I GAANNNNTTC 1 cut(s) 551
AspS9I GGNCC 1 cut(s) 718
AsuC2I CCSGG 1 cut(s) 469
AsuHPI GGTGA 6 cut(s) 220, 376, 491, 706, 842, 1769
AvaI CYCGRG 2 cut(s) 94, 704
AvaII GGWCC 1 cut(s) 718
BaeGI GKGCMC 1 cut(s) 1033
BanI GGYRCC 2 cut(s) 1028, 1523
BanII GRGCYC 2 cut(s) 1234, 1379
BarI GAAGNNNNNNTAC 2 cut(s) 1809, 1841
BbrPI CACGTG 2 cut(s) 490, 1439
BbsI GAAGAC 2 cut(s) 470, 1170
Bbv12I GWGCWC 1 cut(s) 1379
BbvI GCAGC 7 cut(s) 455, 790, 1006, 1146, 1267, 1560, 1582
BccI CCATC 5 cut(s) 470, 476, 610, 947, 1041
BceAI ACGGC 2 cut(s) 286, 423
BcgI CGANNNNNNTGC 2 cut(s) 432, 466
BciT130I CCWGG 1 cut(s) 1707
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 1 cut(s) 469
BcoDI GTCTC 3 cut(s) 133, 363, 1675
BcuI ACTAGT 1 cut(s) 1339
BfaI CTAG 3 cut(s) 1034, 1340, 1580
BfmI CTRYAG 1 cut(s) 1711
BfuAI ACCTGC 1 cut(s) 959
BglII AGATCT 2 cut(s) 1626, 1773
BisI GCNGC 7 cut(s) 444, 779, 1020, 1135, 1281, 1571, 1574
BlpI GCTNAGC 1 cut(s) 1138
BlsI GCNGC 7 cut(s) 445, 780, 1021, 1136, 1282, 1572, 1575
BmcAI AGTACT 2 cut(s) 1314, 1785
Bme1390I CCNGG 2 cut(s) 469, 1707
Bme18I GGWCC 1 cut(s) 718
BmeRI GACNNNNNGTC 1 cut(s) 1432
BmeT110I CYCGRG 2 cut(s) 94, 704
BmgT120I GGNCC 1 cut(s) 718
BmiI GGNNCC 5 cut(s) 719, 1030, 1395, 1525, 1590
BmrFI CCNGG 2 cut(s) 469, 1707
BmrI ACTGGG 3 cut(s) 542, 915, 1517
BmsI GCATC 3 cut(s) 360, 622, 1073
BmuI ACTGGG 3 cut(s) 542, 915, 1517
BpiI GAAGAC 2 cut(s) 470, 1170
Bpu1102I GCTNAGC 1 cut(s) 1138
BpuEI CTTGAG 1 cut(s) 1764
BpuMI CCSGG 1 cut(s) 469
BsaAI YACGTR 2 cut(s) 490, 1439
BsaJI CCNNGG 3 cut(s) 295, 721, 1222
BsaWI WCCGGW 1 cut(s) 1601
Bsc4I CCNNNNNNNGG 4 cut(s) 312, 525, 585, 1039
Bse118I RCCGGY 1 cut(s) 1754
Bse1I ACTGG 4 cut(s) 537, 910, 999, 1512
Bse3DI GCAATG 2 cut(s) 402, 945
BseAI TCCGGA 1 cut(s) 1601
BseBI CCWGG 1 cut(s) 1707
BseDI CCNNGG 3 cut(s) 295, 721, 1222
BseGI GGATG 6 cut(s) 255, 481, 637, 1657, 1671, 1819
BseLI CCNNNNNNNGG 4 cut(s) 312, 525, 585, 1039
BseMI GCAATG 2 cut(s) 402, 945
BseMII CTCAG 1 cut(s) 1671
BseNI ACTGG 4 cut(s) 537, 910, 999, 1512
BseRI GAGGAG 1 cut(s) 188
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 7 cut(s) 455, 790, 1006, 1146, 1267, 1560, 1582
BsgI GTGCAG 4 cut(s) 462, 645, 1461, 1589
Bsh1236I CGCG 1 cut(s) 882
BshFI GGCC 3 cut(s) 300, 438, 1288
BshNI GGYRCC 2 cut(s) 1028, 1523
BsiHKAI GWGCWC 1 cut(s) 1379
BsiHKCI CYCGRG 2 cut(s) 94, 704
BsiSI CCGG 4 cut(s) 374, 468, 1602, 1755
BslFI GGGAC 2 cut(s) 731, 1088
BslI CCNNNNNNNGG 4 cut(s) 312, 525, 585, 1039
BsmAI GTCTC 3 cut(s) 133, 363, 1675
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 731, 1088
BsmI GAATGC 2 cut(s) 898, 1201
BsnI GGCC 3 cut(s) 300, 438, 1288
BsoBI CYCGRG 2 cut(s) 94, 704
Bsp1286I GDGCHC 3 cut(s) 1033, 1234, 1379
Bsp13I TCCGGA 1 cut(s) 1601
Bsp143I GATC 4 cut(s) 504, 877, 1626, 1773
Bsp1720I GCTNAGC 1 cut(s) 1138
Bsp19I CCATGG 1 cut(s) 1222
BspACI CCGC 4 cut(s) 37, 635, 714, 1634
BspANI GGCC 3 cut(s) 300, 438, 1288
BspCNI CTCAG 1 cut(s) 1670
BspEI TCCGGA 1 cut(s) 1601
BspFNI CGCG 1 cut(s) 882
BspHI TCATGA 1 cut(s) 1741
BspLI GGNNCC 5 cut(s) 719, 1030, 1395, 1525, 1590
BspMI ACCTGC 1 cut(s) 959
BspPI GGATC 1 cut(s) 885
BspT107I GGYRCC 2 cut(s) 1028, 1523
BsrDI GCAATG 2 cut(s) 402, 945
BsrFI RCCGGY 1 cut(s) 1754
BsrI ACTGG 4 cut(s) 537, 910, 999, 1512
BssAI RCCGGY 1 cut(s) 1754
BssECI CCNNGG 3 cut(s) 295, 721, 1222
BssMI GATC 4 cut(s) 504, 877, 1626, 1773
BssNAI GTATAC 1 cut(s) 609
BssT1I CCWWGG 2 cut(s) 721, 1222
Bst1107I GTATAC 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 1707
Bst4CI ACNGT 1 cut(s) 863
Bst6I CTCTTC 4 cut(s) 251, 339, 404, 1764
BstAPI GCANNNNNTGC 3 cut(s) 632, 1019, 1028
BstBAI YACGTR 2 cut(s) 490, 1439
BstC8I GCNNGC 3 cut(s) 624, 712, 1636
BstDEI CTNAG 5 cut(s) 5, 1125, 1138, 1151, 1657
BstDSI CCRYGG 2 cut(s) 295, 1222
BstF5I GGATG 6 cut(s) 255, 481, 637, 1657, 1671, 1819
BstFNI CGCG 1 cut(s) 882
BstKTI GATC 4 cut(s) 507, 880, 1629, 1776
BstMAI GTCTC 3 cut(s) 133, 363, 1675
BstMBI GATC 4 cut(s) 504, 877, 1626, 1773
BstMWI GCNNNNNNNGC 4 cut(s) 632, 1019, 1028, 1238
BstNI CCWGG 1 cut(s) 1707
BstNSI RCATGY 2 cut(s) 1017, 1171
BstSCI CCNGG 2 cut(s) 467, 1705
BstSFI CTRYAG 1 cut(s) 1711
BstSLI GKGCMC 1 cut(s) 1033
BstUI CGCG 1 cut(s) 882
BstV1I GCAGC 7 cut(s) 455, 790, 1006, 1146, 1267, 1560, 1582
BstV2I GAAGAC 2 cut(s) 470, 1170
BstX2I RGATCY 2 cut(s) 1626, 1773
BstYI RGATCY 2 cut(s) 1626, 1773
BstZ17I GTATAC 1 cut(s) 609
BsuRI GGCC 3 cut(s) 300, 438, 1288
BtgI CCRYGG 2 cut(s) 295, 1222
BtsCI GGATG 6 cut(s) 255, 481, 637, 1657, 1671, 1819
BtsIMutI CAGTG 3 cut(s) 992, 1505, 1554
BveI ACCTGC 1 cut(s) 959
Cac8I GCNNGC 3 cut(s) 624, 712, 1636
CciI TCATGA 1 cut(s) 1741
Cfr10I RCCGGY 1 cut(s) 1754
Cfr13I GGNCC 1 cut(s) 718
CseI GACGC 2 cut(s) 115, 871
Csp6I GTAC 5 cut(s) 322, 514, 1313, 1451, 1784
CviQI GTAC 5 cut(s) 322, 514, 1313, 1451, 1784
DdeI CTNAG 5 cut(s) 5, 1125, 1138, 1151, 1657
DpnI GATC 4 cut(s) 506, 879, 1628, 1775
DpnII GATC 4 cut(s) 504, 877, 1626, 1773
DriI GACNNNNNGTC 1 cut(s) 1432
EaeI YGGCCR 2 cut(s) 436, 1286
Eam1104I CTCTTC 4 cut(s) 251, 339, 404, 1764
Eam1105I GACNNNNNGTC 1 cut(s) 1432
EarI CTCTTC 4 cut(s) 251, 339, 404, 1764
Ecl136II GAGCTC 1 cut(s) 1377
Eco130I CCWWGG 2 cut(s) 721, 1222
Eco24I GRGCYC 2 cut(s) 1234, 1379
Eco32I GATATC 2 cut(s) 1206, 1552
Eco47I GGWCC 1 cut(s) 718
Eco53kI GAGCTC 1 cut(s) 1377
Eco72I CACGTG 2 cut(s) 490, 1439
Eco88I CYCGRG 2 cut(s) 94, 704
EcoICRI GAGCTC 1 cut(s) 1377
EcoO109I RGGNCCY 1 cut(s) 718
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 1705
EcoRV GATATC 2 cut(s) 1206, 1552
EcoT14I CCWWGG 2 cut(s) 721, 1222
EcoT38I GRGCYC 2 cut(s) 1234, 1379
ErhI CCWWGG 2 cut(s) 721, 1222
Esp3I CGTCTC 1 cut(s) 133
FaqI GGGAC 2 cut(s) 731, 1088
FauI CCCGC 3 cut(s) 44, 707, 1627
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 1 cut(s) 608
Fnu4HI GCNGC 7 cut(s) 444, 779, 1020, 1135, 1281, 1571, 1574
FokI GGATG 6 cut(s) 242, 488, 644, 1664, 1678, 1826
FriOI GRGCYC 2 cut(s) 1234, 1379
Fsp4HI GCNGC 7 cut(s) 444, 779, 1020, 1135, 1281, 1571, 1574
FspBI CTAG 3 cut(s) 1034, 1340, 1580
GluI GCNGC 7 cut(s) 444, 779, 1020, 1135, 1281, 1571, 1574
HaeIII GGCC 3 cut(s) 300, 438, 1288
HapII CCGG 4 cut(s) 374, 468, 1602, 1755
HgaI GACGC 2 cut(s) 115, 871
HincII GTYRAC 1 cut(s) 1426
HindII GTYRAC 1 cut(s) 1426
HindIII AAGCTT 1 cut(s) 1458
HinfI GANTC 7 cut(s) 415, 493, 575, 688, 1655, 1702, 1732
HpaII CCGG 4 cut(s) 374, 468, 1602, 1755
HphI GGTGA 6 cut(s) 220, 376, 491, 706, 842, 1769
Hpy166II GTNNAC 2 cut(s) 609, 1426
Hpy188I TCNGA 5 cut(s) 424, 504, 931, 1069, 1533
Hpy188III TCNNGA 6 cut(s) 96, 115, 1474, 1580, 1602, 1742
Hpy8I GTNNAC 2 cut(s) 609, 1426
Hpy99I CGWCG 1 cut(s) 1359
HpyAV CCTTC 5 cut(s) 30, 541, 1602, 1804, 1811
HpyCH4III ACNGT 1 cut(s) 863
HpyCH4IV ACGT 4 cut(s) 285, 489, 1301, 1438
HpyF10VI GCNNNNNNNGC 4 cut(s) 632, 1019, 1028, 1238
HpyF3I CTNAG 5 cut(s) 5, 1125, 1138, 1151, 1657
HpySE526I ACGT 4 cut(s) 285, 489, 1301, 1438
Kpn2I TCCGGA 1 cut(s) 1601
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 4 cut(s) 504, 877, 1626, 1773
LmnI GCTCC 4 cut(s) 297, 424, 1511, 1588
Lsp1109I GCAGC 7 cut(s) 455, 790, 1006, 1146, 1267, 1560, 1582
LweI GCATC 3 cut(s) 360, 622, 1073
MaeI CTAG 3 cut(s) 1034, 1340, 1580
MaeII ACGT 4 cut(s) 285, 489, 1301, 1438
MaeIII GTNAC 7 cut(s) 485, 490, 883, 1434, 1501, 1515, 1820
MalI GATC 4 cut(s) 506, 879, 1628, 1775
MboI GATC 4 cut(s) 504, 877, 1626, 1773
MboII GAAGA 9 cut(s) 238, 326, 391, 475, 625, 880, 1175, 1280, 1781
MfeI CAATTG 1 cut(s) 1023
MflI RGATCY 2 cut(s) 1626, 1773
MhlI GDGCHC 3 cut(s) 1033, 1234, 1379
MluCI AATT 7 cut(s) 80, 379, 561, 784, 1023, 1583, 1762
MlyI GAGTC 4 cut(s) 487, 682, 1649, 1696
MmeI TCCRAC 6 cut(s) 392, 453, 979, 1105, 1315, 1511
MroI TCCGGA 1 cut(s) 1601
MroXI GAANNNNTTC 1 cut(s) 551
MseI TTAA 5 cut(s) 429, 1370, 1640, 1788, 1836
MslI CAYNNNNRTG 2 cut(s) 438, 1755
MspA1I CMGCKG 2 cut(s) 781, 1573
MspI CCGG 4 cut(s) 374, 468, 1602, 1755
MspR9I CCNGG 2 cut(s) 469, 1707
MunI CAATTG 1 cut(s) 1023
Mva1269I GAATGC 2 cut(s) 898, 1201
MvaI CCWGG 1 cut(s) 1707
MvnI CGCG 1 cut(s) 882
MwoI GCNNNNNNNGC 4 cut(s) 632, 1019, 1028, 1238
NciI CCSGG 1 cut(s) 469
NcoI CCATGG 1 cut(s) 1222
NdeII GATC 4 cut(s) 504, 877, 1626, 1773
NlaIV GGNNCC 5 cut(s) 719, 1030, 1395, 1525, 1590
NmeAIII GCCGAG 1 cut(s) 1264
NmuCI GTSAC 4 cut(s) 485, 490, 883, 1434
NspI RCATGY 2 cut(s) 1017, 1171
OliI CACNNNNGTG 1 cut(s) 1755
PagI TCATGA 1 cut(s) 1741
PaqCI CACCTGC 1 cut(s) 959
PcsI WCGNNNNNNNCGW 2 cut(s) 282, 590
PctI GAATGC 2 cut(s) 898, 1201
PdmI GAANNNNTTC 1 cut(s) 551
PfeI GAWTC 3 cut(s) 415, 575, 1732
PflMI CCANNNNNTGG 1 cut(s) 312
PkrI GCNGC 7 cut(s) 445, 780, 1021, 1136, 1282, 1572, 1575
PleI GAGTC 4 cut(s) 487, 682, 1649, 1696
PmaCI CACGTG 2 cut(s) 490, 1439
PmlI CACGTG 2 cut(s) 490, 1439
PpsI GAGTC 4 cut(s) 487, 682, 1649, 1696
Ppu21I YACGTR 2 cut(s) 490, 1439
PpuMI RGGWCCY 1 cut(s) 718
PshBI ATTAAT 1 cut(s) 1836
Psp124BI GAGCTC 1 cut(s) 1379
Psp5II RGGWCCY 1 cut(s) 718
Psp6I CCWGG 1 cut(s) 1705
PspCI CACGTG 2 cut(s) 490, 1439
PspGI CCWGG 1 cut(s) 1705
PspN4I GGNNCC 5 cut(s) 719, 1030, 1395, 1525, 1590
PspPI GGNCC 1 cut(s) 718
PspPPI RGGWCCY 1 cut(s) 718
PsuI RGATCY 2 cut(s) 1626, 1773
PvuII CAGCTG 2 cut(s) 781, 1573
RsaI GTAC 5 cut(s) 323, 515, 1314, 1452, 1785
RsaNI GTAC 5 cut(s) 322, 514, 1313, 1451, 1784
RseI CAYNNNNRTG 2 cut(s) 438, 1755
SacI GAGCTC 1 cut(s) 1379
SaqAI TTAA 5 cut(s) 429, 1370, 1640, 1788, 1836
SatI GCNGC 7 cut(s) 444, 779, 1020, 1135, 1281, 1571, 1574
Sau3AI GATC 4 cut(s) 504, 877, 1626, 1773
Sau96I GGNCC 1 cut(s) 718
ScaI AGTACT 2 cut(s) 1314, 1785
SchI GAGTC 4 cut(s) 487, 682, 1649, 1696
ScrFI CCNGG 2 cut(s) 469, 1707
SduI GDGCHC 3 cut(s) 1033, 1234, 1379
SfaNI GCATC 3 cut(s) 360, 622, 1073
SfcI CTRYAG 1 cut(s) 1711
SgrAI CRCCGGYG 1 cut(s) 1754
SinI GGWCC 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 438, 1755
SmlI CTYRAG 1 cut(s) 1779
SmoI CTYRAG 1 cut(s) 1779
SpeI ACTAGT 1 cut(s) 1339
Sse9I AATT 7 cut(s) 80, 379, 561, 784, 1023, 1583, 1762
SsiI CCGC 4 cut(s) 37, 635, 714, 1634
SspMI CTAG 3 cut(s) 1034, 1340, 1580
SstI GAGCTC 1 cut(s) 1379
StyD4I CCNGG 2 cut(s) 467, 1705
StyI CCWWGG 2 cut(s) 721, 1222
TaaI ACNGT 1 cut(s) 863
TaiI ACGT 4 cut(s) 288, 492, 1304, 1441
TaqI TCGA 4 cut(s) 555, 593, 1344, 1357
TasI AATT 7 cut(s) 80, 379, 561, 784, 1023, 1583, 1762
TatI WGTACW 3 cut(s) 513, 1312, 1783
TfiI GAWTC 3 cut(s) 415, 575, 1732
Tru1I TTAA 5 cut(s) 429, 1370, 1640, 1788, 1836
Tru9I TTAA 5 cut(s) 429, 1370, 1640, 1788, 1836
TscAI CASTG 3 cut(s) 999, 1512, 1561
TseFI GTSAC 4 cut(s) 485, 490, 883, 1434
TseI GCWGC 7 cut(s) 443, 778, 1019, 1134, 1280, 1570, 1573
Tsp45I GTSAC 4 cut(s) 485, 490, 883, 1434
TspGWI ACGGA 4 cut(s) 284, 559, 568, 936
TspRI CASTG 3 cut(s) 999, 1512, 1561
Van91I CCANNNNNTGG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 718
VspI ATTAAT 1 cut(s) 1836
XapI RAATTY 2 cut(s) 561, 784
XbaI TCTAGA 1 cut(s) 1579
XceI RCATGY 2 cut(s) 1017, 1171
XmiI GTMKAC 1 cut(s) 608
XmnI GAANNNNTTC 1 cut(s) 551
XspI CTAG 3 cut(s) 1034, 1340, 1580
ZrmI AGTACT 2 cut(s) 1314, 1785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.