Pectate lyase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G09280 |
| fragaria_vesca | FvH4_5g27090 |
| malus_domestica | MD06G1000300.v1.1 MD06G1241300.v1.1 |
| prunus_persica | Prupe.1G565000_v2.0.a1 Prupe.1G565500_v2.0.a1 Prupe.1G565700_v2.0.a1 Prupe.1G565800_v2.0.a1 Prupe.5G245600_v2.0.a1 |
| pyrus_communis | pycom06g00070 pycom06g00080 |
| rosa_chinensis | RchiOBHm_Chr7g0218091 |
| rosa_laevigata | RLG00000002406 RLG00000008303 |
| rosa_multiflora | Rmu_sc0000379.1_g000019 |
| rosa_roxburghii | Rroxscaffold_3G00241330 Rroxscaffold_5G00356480 |
| rosa_rugosa | Rorug04G0104700 Rorug07G0173900 |
| rosa_samantha | Rh7AG316300 Rh7BG306500 Rh7DG315200 |
| rosa_wichuraiana | Rw7G026780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 41, 131 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 77 |
| AjnI | CCWGG | 1 cut(s) | 76 |
| AluBI | AGCT | 2 cut(s) | 98, 180 |
| AluI | AGCT | 2 cut(s) | 98, 180 |
| AlwI | GGATC | 2 cut(s) | 41, 131 |
| AspLEI | GCGC | 1 cut(s) | 206 |
| AsuC2I | CCSGG | 1 cut(s) | 223 |
| AsuHPI | GGTGA | 1 cut(s) | 34 |
| BccI | CCATC | 1 cut(s) | 188 |
| BceAI | ACGGC | 1 cut(s) | 173 |
| BciT130I | CCWGG | 1 cut(s) | 78 |
| BclI | TGATCA | 1 cut(s) | 105 |
| BcnI | CCSGG | 1 cut(s) | 223 |
| BfoI | RGCGCY | 1 cut(s) | 207 |
| Bme1390I | CCNGG | 2 cut(s) | 78, 223 |
| BmrFI | CCNGG | 2 cut(s) | 78, 223 |
| BpuMI | CCSGG | 1 cut(s) | 223 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 77 |
| Bse3DI | GCAATG | 1 cut(s) | 216 |
| BseBI | CCWGG | 1 cut(s) | 78 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 77 |
| BseMI | GCAATG | 1 cut(s) | 216 |
| BsiSI | CCGG | 1 cut(s) | 222 |
| BslFI | GGGAC | 1 cut(s) | 152 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 77 |
| BsmFI | GGGAC | 1 cut(s) | 152 |
| BsmI | GAATGC | 1 cut(s) | 232 |
| Bsp143I | GATC | 3 cut(s) | 46, 105, 123 |
| BspPI | GGATC | 2 cut(s) | 41, 131 |
| BsrDI | GCAATG | 1 cut(s) | 216 |
| BssMI | GATC | 3 cut(s) | 46, 105, 123 |
| Bst2UI | CCWGG | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 1 cut(s) | 241 |
| Bst6I | CTCTTC | 1 cut(s) | 193 |
| BstC8I | GCNNGC | 2 cut(s) | 232, 255 |
| BstH2I | RGCGCY | 1 cut(s) | 207 |
| BstHHI | GCGC | 1 cut(s) | 206 |
| BstKTI | GATC | 3 cut(s) | 49, 108, 126 |
| BstMBI | GATC | 3 cut(s) | 46, 105, 123 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 227 |
| BstNI | CCWGG | 1 cut(s) | 78 |
| BstNSI | RCATGY | 2 cut(s) | 145, 234 |
| BstSCI | CCNGG | 2 cut(s) | 76, 221 |
| BtsI | GCAGTG | 2 cut(s) | 164, 183 |
| BtsIMutI | CAGTG | 2 cut(s) | 164, 183 |
| Cac8I | GCNNGC | 2 cut(s) | 232, 255 |
| CfoI | GCGC | 1 cut(s) | 206 |
| CviAII | CATG | 4 cut(s) | 23, 103, 142, 231 |
| CviJI | RGCY | 3 cut(s) | 21, 98, 180 |
| CviKI_1 | RGCY | 3 cut(s) | 21, 98, 180 |
| DpnI | GATC | 3 cut(s) | 48, 107, 125 |
| DpnII | GATC | 3 cut(s) | 46, 105, 123 |
| Eam1104I | CTCTTC | 1 cut(s) | 193 |
| EarI | CTCTTC | 1 cut(s) | 193 |
| EcoRII | CCWGG | 1 cut(s) | 76 |
| EcoT22I | ATGCAT | 2 cut(s) | 64, 232 |
| FaeI | CATG | 4 cut(s) | 26, 106, 145, 234 |
| FaiI | YATR | 6 cut(s) | 24, 93, 104, 143, 232, 262 |
| FaqI | GGGAC | 1 cut(s) | 152 |
| FatI | CATG | 4 cut(s) | 22, 102, 141, 230 |
| FbaI | TGATCA | 1 cut(s) | 105 |
| GlaI | GCGC | 1 cut(s) | 205 |
| HaeII | RGCGCY | 1 cut(s) | 207 |
| HapII | CCGG | 1 cut(s) | 222 |
| HhaI | GCGC | 1 cut(s) | 206 |
| Hin1II | CATG | 4 cut(s) | 26, 106, 145, 234 |
| Hin6I | GCGC | 1 cut(s) | 204 |
| HinP1I | GCGC | 1 cut(s) | 204 |
| HpaII | CCGG | 1 cut(s) | 222 |
| HphI | GGTGA | 1 cut(s) | 34 |
| Hpy166II | GTNNAC | 1 cut(s) | 214 |
| Hpy188I | TCNGA | 1 cut(s) | 51 |
| Hpy188III | TCNNGA | 1 cut(s) | 133 |
| Hpy8I | GTNNAC | 1 cut(s) | 214 |
| HpyCH4III | ACNGT | 1 cut(s) | 241 |
| HpyCH4IV | ACGT | 1 cut(s) | 12 |
| HpyCH4V | TGCA | 2 cut(s) | 62, 230 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 227 |
| HpySE526I | ACGT | 1 cut(s) | 12 |
| Hsp92II | CATG | 4 cut(s) | 26, 106, 145, 234 |
| HspAI | GCGC | 1 cut(s) | 204 |
| Ksp22I | TGATCA | 1 cut(s) | 105 |
| Kzo9I | GATC | 3 cut(s) | 46, 105, 123 |
| LmnI | GCTCC | 1 cut(s) | 95 |
| LpnPI | CCDG | 4 cut(s) | 63, 90, 146, 235 |
| MaeII | ACGT | 1 cut(s) | 12 |
| MaeIII | GTNAC | 3 cut(s) | 25, 40, 53 |
| MalI | GATC | 3 cut(s) | 48, 107, 125 |
| MboI | GATC | 3 cut(s) | 46, 105, 123 |
| MboII | GAAGA | 1 cut(s) | 210 |
| MluCI | AATT | 1 cut(s) | 147 |
| MnlI | CCTC | 2 cut(s) | 129, 194 |
| Mph1103I | ATGCAT | 2 cut(s) | 64, 232 |
| MseI | TTAA | 2 cut(s) | 150, 248 |
| MspI | CCGG | 1 cut(s) | 222 |
| MspR9I | CCNGG | 2 cut(s) | 78, 223 |
| Mva1269I | GAATGC | 1 cut(s) | 232 |
| MvaI | CCWGG | 1 cut(s) | 78 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 227 |
| NciI | CCSGG | 1 cut(s) | 223 |
| NdeII | GATC | 3 cut(s) | 46, 105, 123 |
| NlaIII | CATG | 4 cut(s) | 26, 106, 145, 234 |
| NmuCI | GTSAC | 3 cut(s) | 25, 40, 53 |
| NsiI | ATGCAT | 2 cut(s) | 64, 232 |
| NspI | RCATGY | 2 cut(s) | 145, 234 |
| PaeI | GCATGC | 1 cut(s) | 234 |
| PctI | GAATGC | 1 cut(s) | 232 |
| PfoI | TCCNGGA | 1 cut(s) | 76 |
| Psp6I | CCWGG | 1 cut(s) | 76 |
| PspGI | CCWGG | 1 cut(s) | 76 |
| SaqAI | TTAA | 2 cut(s) | 150, 248 |
| Sau3AI | GATC | 3 cut(s) | 46, 105, 123 |
| ScrFI | CCNGG | 2 cut(s) | 78, 223 |
| SetI | ASST | 3 cut(s) | 15, 100, 182 |
| SphI | GCATGC | 1 cut(s) | 234 |
| Sse9I | AATT | 1 cut(s) | 147 |
| StyD4I | CCNGG | 2 cut(s) | 76, 221 |
| TaaI | ACNGT | 1 cut(s) | 241 |
| TaiI | ACGT | 1 cut(s) | 15 |
| TasI | AATT | 1 cut(s) | 147 |
| Tru1I | TTAA | 2 cut(s) | 150, 248 |
| Tru9I | TTAA | 2 cut(s) | 150, 248 |
| TscAI | CASTG | 2 cut(s) | 171, 190 |
| TseFI | GTSAC | 3 cut(s) | 25, 40, 53 |
| Tsp45I | GTSAC | 3 cut(s) | 25, 40, 53 |
| TspRI | CASTG | 2 cut(s) | 171, 190 |
| XceI | RCATGY | 2 cut(s) | 145, 234 |
| Zsp2I | ATGCAT | 2 cut(s) | 64, 232 |