Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Reverse (-)

19721465 .. 19723307

Gene Structure 1843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTTCCAATTTCTGGACTTCGACGCACTACAAAGAGCTTAAGGACCCAGAAGAGGTTAATGTTGTTCATCCTCTTGATGCTCAGAGAGGAATCTCTGTTGAAGATTTCAGACTCATTAAGCTTCATATGTCTAATTATATATCGAAACTGGCACAACACATTAAGATTAGGCAAAGAGTTGTTGCAACTGCAGTAACCTATATGCGTCGTGTTTACACAAGAAAGAGTTTGACGGAATATGAGCCTCGGCTTGTTGCTCCTACATGCTTGTATTTGGCTTGCAAAGCAGAAGAGAGTGTGGTGCATGCCAAACTTCTTGTCTTCTACATGAAAAAACTTTATGCGGATGAAAAGTTTCGATATGAGATTAAAGATATTCTGGAAATGGAGATGAAGGTCTTGGAAGCATTGAACTTCTATCTTGTTGTATTCCACCCATATCGATCTCTGCCTGAGTTCTTGCAGGATTCTGGAATCAATGACACTAGTATGACCCATCTAACTTGGGGTCTTGTCAACGACACATATAGAATGGACCTCATCCTTATACATCCGCCGTTTCTCATAACACTCGCTTGCATTTACATTGCTTCTGTACACAAAGAGAAAGACATAAAGACATGGTTTGAAGAGCTTTCTGTCGACATGAACATTGTGAAGAATATTGCAATGGAGATATTAGATTTCTATGAAAACCATAGACTGTTCACGGAAGAGAGAGTTCACGCCGCCTTCAACAAACTTGCTACAAACCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

253

Amino Acids

29.84

Weight (kDa)

6.6

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	23 - 142	8.3e-20	Cyclin, N-terminal domain
TFIIB	PF00382	45 - 99	3e-06	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	3 cut(s)	347, 557, 732
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	15, 55
AflII	CTTAAG	1 cut(s)	41
AgsI	TTSAA	4 cut(s)	104, 415, 632, 739
AhlI	ACTAGT	1 cut(s)	488
AluBI	AGCT	3 cut(s)	40, 124, 637
AluI	AGCT	3 cut(s)	40, 124, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	46, 538
AvaII	GGWCC	2 cut(s)	46, 538
BbsI	GAAGAC	1 cut(s)	316
BccI	CCATC	1 cut(s)	507
BceAI	ACGGC	1 cut(s)	544
BcuI	ACTAGT	1 cut(s)	488
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	192
BfrI	CTTAAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	733
Bme18I	GGWCC	2 cut(s)	46, 538
BmgT120I	GGNCC	2 cut(s)	46, 538
BmiI	GGNNCC	1 cut(s)	48
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	316
Bsa29I	ATCGAT	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 55
Bse1I	ACTGG	1 cut(s)	156
Bse3DI	GCAATG	2 cut(s)	588, 678
BseCI	ATCGAT	1 cut(s)	445
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	4 cut(s)	70, 355, 543, 553
BseLI	CCNNNNNNNGG	2 cut(s)	15, 55
BseMI	GCAATG	2 cut(s)	588, 678
BseMII	CTCAG	2 cut(s)	98, 447
BseNI	ACTGG	1 cut(s)	156
BshVI	ATCGAT	1 cut(s)	445
BslI	CCNNNNNNNGG	2 cut(s)	15, 55
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	1 cut(s)	446
BspACI	CCGC	3 cut(s)	347, 557, 732
BspCNI	CTCAG	2 cut(s)	97, 448
BspDI	ATCGAT	1 cut(s)	445
BspLI	GGNNCC	1 cut(s)	48
BspMAI	CTGCAG	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	627
BspTI	CTTAAG	1 cut(s)	41
BsrDI	GCAATG	2 cut(s)	588, 678
BsrGI	TGTACA	1 cut(s)	598
BsrI	ACTGG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	248
BssMI	GATC	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	708
Bst6I	CTCTTC	4 cut(s)	48, 288, 627, 711
BstAFI	CTTAAG	1 cut(s)	41
BstAUI	TGTACA	1 cut(s)	598
BstC8I	GCNNGC	3 cut(s)	283, 309, 580
BstDEI	CTNAG	2 cut(s)	84, 456
BstF5I	GGATG	4 cut(s)	70, 355, 543, 553
BstKTI	GATC	1 cut(s)	449
BstMBI	GATC	1 cut(s)	446
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNSI	RCATGY	2 cut(s)	270, 311
BstSFI	CTRYAG	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	445
BsuTUI	ATCGAT	1 cut(s)	445
BtsCI	GGATG	4 cut(s)	70, 355, 543, 553
Cac8I	GCNNGC	3 cut(s)	283, 309, 580
Cfr13I	GGNCC	2 cut(s)	46, 538
ClaI	ATCGAT	1 cut(s)	445
CseI	GACGC	2 cut(s)	34, 197
Csp6I	GTAC	1 cut(s)	599
CviAII	CATG	5 cut(s)	267, 308, 331, 624, 649
CviJI	RGCY	7 cut(s)	5, 40, 124, 247, 253, 281, 637
CviKI_1	RGCY	7 cut(s)	5, 40, 124, 247, 253, 281, 637
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	2 cut(s)	84, 456
DpnI	GATC	1 cut(s)	448
DpnII	GATC	1 cut(s)	446
Eam1104I	CTCTTC	4 cut(s)	48, 288, 627, 711
EarI	CTCTTC	4 cut(s)	48, 288, 627, 711
EciI	GGCGGA	1 cut(s)	546
Eco47I	GGWCC	2 cut(s)	46, 538
EcoO109I	RGGNCCY	1 cut(s)	46
FaeI	CATG	5 cut(s)	270, 311, 334, 627, 652
FatI	CATG	5 cut(s)	266, 307, 330, 623, 648
FauNDI	CATATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	1 cut(s)	732
FokI	GGATG	4 cut(s)	57, 362, 530, 540
Fsp4HI	GCNGC	1 cut(s)	732
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	1 cut(s)	732
HgaI	GACGC	2 cut(s)	34, 197
Hin1II	CATG	5 cut(s)	270, 311, 334, 627, 652
HincII	GTYRAC	2 cut(s)	520, 646
HindII	GTYRAC	2 cut(s)	520, 646
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	4 cut(s)	93, 114, 470, 477
Hpy166II	GTNNAC	6 cut(s)	217, 520, 601, 646, 711, 727
Hpy188I	TCNGA	2 cut(s)	87, 113
Hpy188III	TCNNGA	4 cut(s)	16, 77, 383, 474
Hpy8I	GTNNAC	6 cut(s)	217, 520, 601, 646, 711, 727
Hpy99I	CGWCG	2 cut(s)	28, 213
HpyAV	CCTTC	2 cut(s)	391, 745
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4V	TGCA	7 cut(s)	188, 194, 285, 307, 466, 582, 671
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	84, 456
Hsp92II	CATG	5 cut(s)	270, 311, 334, 627, 652
Kzo9I	GATC	1 cut(s)	446
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	6 cut(s)	63, 137, 368, 452, 459, 468
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	448
MboI	GATC	1 cut(s)	446
MboII	GAAGA	7 cut(s)	65, 116, 305, 316, 644, 673, 728
MluCI	AATT	2 cut(s)	10, 136
MlyI	GAGTC	1 cut(s)	108
MnlI	CCTC	5 cut(s)	49, 83, 84, 258, 551
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	5 cut(s)	42, 60, 120, 165, 372
MslI	CAYNNNNRTG	1 cut(s)	491
MspCI	CTTAAG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	1 cut(s)	446
NlaIII	CATG	5 cut(s)	270, 311, 334, 627, 652
NlaIV	GGNNCC	1 cut(s)	48
NmeAIII	GCCGAG	1 cut(s)	229
NspI	RCATGY	2 cut(s)	270, 311
PaeI	GCATGC	1 cut(s)	311
PciSI	GCTCTTC	1 cut(s)	627
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	3 cut(s)	93, 470, 477
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	733
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	46
Psp5II	RGGWCCY	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	2 cut(s)	46, 538
PspPPI	RGGWCCY	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	196
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
RseI	CAYNNNNRTG	1 cut(s)	491
SalI	GTCGAC	1 cut(s)	644
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	5 cut(s)	42, 60, 120, 165, 372
SatI	GCNGC	1 cut(s)	732
Sau3AI	GATC	1 cut(s)	446
Sau96I	GGNCC	2 cut(s)	46, 538
SchI	GAGTC	1 cut(s)	108
SetI	ASST	7 cut(s)	42, 60, 126, 203, 402, 543, 639
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	46, 538
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	41
SmoI	CTYRAG	1 cut(s)	41
SpeI	ACTAGT	1 cut(s)	488
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	2 cut(s)	10, 136
SsiI	CCGC	3 cut(s)	347, 557, 732
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	1 cut(s)	489
TaaI	ACNGT	1 cut(s)	708
TaqI	TCGA	5 cut(s)	23, 146, 361, 445, 645
TasI	AATT	2 cut(s)	10, 136
TatI	WGTACW	1 cut(s)	598
TauI	GCSGC	1 cut(s)	734
TfiI	GAWTC	3 cut(s)	93, 470, 477
Tru1I	TTAA	5 cut(s)	42, 60, 120, 165, 372
Tru9I	TTAA	5 cut(s)	42, 60, 120, 165, 372
TspDTI	ATGAA	7 cut(s)	59, 116, 347, 366, 410, 665, 708
TspGWI	ACGGA	2 cut(s)	251, 728
Van91I	CCANNNNNTGG	1 cut(s)	15
Vha464I	CTTAAG	1 cut(s)	41
VpaK11BI	GGWCC	2 cut(s)	46, 538
XceI	RCATGY	2 cut(s)	270, 311
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.