Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Reverse (-)

18816217 .. 18819943

Gene Structure 3727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G196700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTGCCAATTTCTGGACGTCGTCCCACTACAAACAGCTTTTCGACCAGGAAGATGTGGATGTGGTCTTCCCACTTGATAAAGAGAAAGGCATCACTCTTGAAGACTTCAAGCTCATAAAGATGCATATGGCCAGCTATATATCAAAATTGGCACAACATGTAAAAGTGAGGCAAAGGGTTGTAGCTACTGCAGTTACATATATGAGACGAGTGTACACCAGGAAGAGTATGTCTGAGTATGATCCACGTCTTGTAGCTCCAACCTGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAAGCTAAACTTCTCGTATTTTACATCAGAAAAATATATTCTGATGAGAAGTATAGATACGAGATCAAAGACATACTGGAAATGGAAATGAAGATTCTAGAAGCTCTCAACTATTATTTAGTTGTATATCATCCTTATCGTTCATTGTCTCAGTTGCTTCAAGATGCAAGCTTAAACGATATAAGTATGACTCAGTTAACTTGGGGAGTAGTAAATGACACATACAAGATGGATCTTGCACTCGTACATCCTCCACACCTGATTGCTTTAGCTTGCATATACATTGCGAGCGTACTTAGAGAGAAAGATACCACAGCATGGTTTGAAGAGCTCCGTGTGGACATGAATGTGGTGAAAAACATATCAATGGAGATATTAGATTTCTATGAAAACCACCGAATGATCCCGGAAGAGAGGTTTAATGCTGCTCTCAACAAGCTAGCCTTCAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

254

Amino Acids

29.76

Weight (kDa)

6.67

Isoelectric Point (pI)

40.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	15, 624
AclWI	GGATC	3 cut(s)	239, 546, 703
AcoI	YGGCCR	1 cut(s)	132
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	4 cut(s)	218, 275, 552, 600
AfiI	CCNNNNNNNGG	2 cut(s)	15, 624
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	5 cut(s)	104, 112, 467, 632, 754
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	3 cut(s)	48, 221, 276
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	2 cut(s)	202, 459
AlwI	GGATC	3 cut(s)	239, 546, 703
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	2 cut(s)	5, 731
AsuC2I	CCSGG	1 cut(s)	713
AsuHPI	GGTGA	1 cut(s)	670
AsuNHI	GCTAGC	1 cut(s)	745
BalI	TGGCCA	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	639
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BbsI	GAAGAC	2 cut(s)	61, 111
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	1 cut(s)	718
BccI	CCATC	1 cut(s)	529
BciT130I	CCWGG	3 cut(s)	50, 223, 278
BcnI	CCSGG	1 cut(s)	713
BcoDI	GTCTC	2 cut(s)	202, 459
BfaI	CTAG	3 cut(s)	404, 746, 760
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	275
BisI	GCNGC	2 cut(s)	6, 732
BlsI	GCNGC	2 cut(s)	7, 733
Bme1390I	CCNGG	4 cut(s)	50, 223, 278, 713
BmgBI	CACGTC	1 cut(s)	251
BmrFI	CCNGG	4 cut(s)	50, 223, 278, 713
BmsI	GCATC	4 cut(s)	102, 114, 290, 460
BmtI	GCTAGC	1 cut(s)	749
BpiI	GAAGAC	2 cut(s)	61, 111
BpuMI	CCSGG	1 cut(s)	713
BsaHI	GRCGYC	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 624
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	3 cut(s)	50, 223, 278
BseGI	GGATG	3 cut(s)	67, 436, 553
BseLI	CCNNNNNNNGG	2 cut(s)	15, 624
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	228, 470, 512
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	718
BshFI	GGCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	2 cut(s)	15, 624
BsmAI	GTCTC	2 cut(s)	202, 459
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	244, 369, 538, 708
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	3 cut(s)	229, 469, 511
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	3 cut(s)	239, 546, 703
BspQI	GCTCTTC	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	588
BsrGI	TGTACA	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	387
BssMI	GATC	4 cut(s)	244, 369, 538, 708
BssNI	GRCGYC	1 cut(s)	20
Bst2UI	CCWGG	3 cut(s)	50, 223, 278
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	3 cut(s)	221, 627, 711
BstACI	GRCGYC	1 cut(s)	20
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	6 cut(s)	136, 309, 475, 580, 595, 747
BstDEI	CTNAG	4 cut(s)	237, 456, 498, 602
BstF5I	GGATG	3 cut(s)	67, 436, 553
BstKTI	GATC	4 cut(s)	247, 372, 541, 711
BstMAI	GTCTC	2 cut(s)	202, 459
BstMBI	GATC	4 cut(s)	244, 369, 538, 708
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	3 cut(s)	50, 223, 278
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	4 cut(s)	48, 221, 276, 711
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	718
BstV2I	GAAGAC	2 cut(s)	61, 111
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	134
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	3 cut(s)	67, 436, 553
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	6 cut(s)	136, 309, 475, 580, 595, 747
Csp6I	GTAC	4 cut(s)	217, 274, 551, 599
CviAII	CATG	3 cut(s)	161, 624, 649
CviQI	GTAC	4 cut(s)	217, 274, 551, 599
DdeI	CTNAG	4 cut(s)	237, 456, 498, 602
DpnI	GATC	4 cut(s)	246, 371, 540, 710
DpnII	GATC	4 cut(s)	244, 369, 538, 708
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	3 cut(s)	221, 627, 711
EarI	CTCTTC	3 cut(s)	221, 627, 711
Ecl136II	GAGCTC	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	637
EcoICRI	GAGCTC	1 cut(s)	637
EcoRII	CCWGG	3 cut(s)	48, 221, 276
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	3 cut(s)	164, 627, 652
FalI	AAGNNNNNCTT	3 cut(s)	300, 332, 734
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	3 cut(s)	160, 623, 648
FauNDI	CATATG	1 cut(s)	129
Fnu4HI	GCNGC	2 cut(s)	6, 732
FokI	GGATG	3 cut(s)	74, 423, 540
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	2 cut(s)	6, 732
FspBI	CTAG	3 cut(s)	404, 746, 760
GluI	GCNGC	2 cut(s)	6, 732
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	713
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	164, 627, 652
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	475
HinfI	GANTC	2 cut(s)	400, 496
HpaI	GTTAAC	1 cut(s)	504
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	4 cut(s)	217, 219, 504, 646
Hpy188I	TCNGA	3 cut(s)	238, 335, 349
Hpy188III	TCNNGA	4 cut(s)	16, 101, 404, 467
Hpy8I	GTNNAC	4 cut(s)	217, 219, 504, 646
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	760
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	2 cut(s)	20, 250
HpyCH4V	TGCA	6 cut(s)	127, 194, 307, 473, 545, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	4 cut(s)	237, 456, 498, 602
HpySE526I	ACGT	2 cut(s)	20, 250
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	164, 627, 652
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	244, 369, 538, 708
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	265, 642
Lsp1109I	GCAGC	1 cut(s)	718
LweI	GCATC	4 cut(s)	102, 114, 290, 460
MaeI	CTAG	3 cut(s)	404, 746, 760
MaeII	ACGT	2 cut(s)	20, 250
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	4 cut(s)	246, 371, 540, 710
MboI	GATC	4 cut(s)	244, 369, 538, 708
MboII	GAAGA	8 cut(s)	61, 65, 116, 238, 305, 409, 644, 728
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	1 cut(s)	639
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	2 cut(s)	10, 149
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	165, 567, 714
Mox20I	TGGCCA	1 cut(s)	134
Mph1103I	ATGCAT	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	3 cut(s)	479, 503, 726
MslI	CAYNNNNRTG	3 cut(s)	122, 653, 671
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	4 cut(s)	50, 223, 278, 713
MvaI	CCWGG	3 cut(s)	50, 223, 278
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	1 cut(s)	713
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	4 cut(s)	244, 369, 538, 708
NheI	GCTAGC	1 cut(s)	745
NlaIII	CATG	3 cut(s)	164, 627, 652
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	1 cut(s)	164
PciI	ACATGT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	400
PflFI	GACNNNGTC	1 cut(s)	22
PflMI	CCANNNNNTGG	2 cut(s)	15, 624
PfoI	TCCNGGA	1 cut(s)	711
PkrI	GCNGC	2 cut(s)	7, 733
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
PscI	ACATGT	1 cut(s)	160
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	3 cut(s)	48, 221, 276
PspGI	CCWGG	3 cut(s)	48, 221, 276
PstI	CTGCAG	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	538
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	4 cut(s)	218, 275, 552, 600
RsaNI	GTAC	4 cut(s)	217, 274, 551, 599
RseI	CAYNNNNRTG	3 cut(s)	122, 653, 671
SacI	GAGCTC	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	3 cut(s)	479, 503, 726
SatI	GCNGC	2 cut(s)	6, 732
Sau3AI	GATC	4 cut(s)	244, 369, 538, 708
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	4 cut(s)	50, 223, 278, 713
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	4 cut(s)	102, 114, 290, 460
SfcI	CTRYAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	3 cut(s)	122, 653, 671
Sse9I	AATT	2 cut(s)	10, 149
SspMI	CTAG	3 cut(s)	404, 746, 760
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	4 cut(s)	48, 221, 276, 711
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	2 cut(s)	23, 253
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	10, 149
TatI	WGTACW	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	400
Tru1I	TTAA	3 cut(s)	479, 503, 726
Tru9I	TTAA	3 cut(s)	479, 503, 726
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	2 cut(s)	5, 731
TspDTI	ATGAA	4 cut(s)	410, 438, 665, 708
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	22
Van91I	CCANNNNNTGG	2 cut(s)	15, 624
XbaI	TCTAGA	1 cut(s)	403
XceI	RCATGY	1 cut(s)	164
XspI	CTAG	3 cut(s)	404, 746, 760
ZraI	GACGTC	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.