Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Reverse (-)

46401807 .. 46405431

Gene Structure 3625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG270500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGACTTCCACTTCTTGTTTTAGGAAGACTATGTCTGAGTATGATCCACGCCTTGTGGCTCCAACCTGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTTCAGGCTAAACTTCTTGTATTTTACATCAAGAAATTATATTCTGATGAAAAGTACAGGTATGAGATCAAAGACATACTTGAAATGGAGATGAAGATTTTAGAAGCTCTCAACTATTATCTAGTTATATACCATCCTTACCGTTCATTGTCTCAGTTGCTTCAGGATACAGGCTTGAATGATATAACTATGACACAAGTAACCTGGGGAATTGTGAACGACACGTACAAGATGGACCTTGCACTTGTATATCCTCCACACCTTATTGCTCTAGCTTGCATATACATTGCCAGCGTACTCAGAGAAAAAGACACCACAGCATGGTTTGAGGAGCTCCGTGTGGATATGAATGTGGTGAAAAACATATCGATGGAGATATTAGATTTCTACGAAAACCACAGAATCACGGAAGAGCGGTGTAATGCTGCTCTCAACAAGCTACCCTCCAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

185

Amino Acids

21.68

Weight (kDa)

5.46

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	8 - 75	2.7e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	423
AccBSI	CCGCTC	1 cut(s)	517
AciI	CCGC	1 cut(s)	517
AclWI	GGATC	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	4 cut(s)	74, 158, 329, 399
AfiI	CCNNNNNNNGG	1 cut(s)	423
AflIII	ACRYGT	1 cut(s)	324
AgsI	TTSAA	2 cut(s)	185, 280
AjnI	CCWGG	2 cut(s)	75, 305
AluBI	AGCT	4 cut(s)	209, 377, 436, 541
AluI	AGCT	4 cut(s)	209, 377, 436, 541
Alw21I	GWGCWC	1 cut(s)	438
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	38
ApeKI	GCWGC	1 cut(s)	527
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	438
BbsI	GAAGAC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	514
BccI	CCATC	3 cut(s)	243, 328, 466
BciT130I	CCWGG	2 cut(s)	77, 307
BciVI	GTATCC	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	2 cut(s)	224, 374
BfuAI	ACCTGC	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	528
BlsI	GCNGC	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	77, 307
Bme18I	GGWCC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	77, 307
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	532
Bsa29I	ATCGAT	1 cut(s)	470
BsaAI	YACGTR	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	77, 307
BseCI	ATCGAT	1 cut(s)	470
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	27, 269, 415
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	1 cut(s)	514
BshVI	ATCGAT	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	2 cut(s)	43, 168
BspACI	CCGC	1 cut(s)	517
BspCNI	CTCAG	3 cut(s)	28, 268, 414
BspDI	ATCGAT	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	507
BsrBI	CCGCTC	1 cut(s)	517
BsrDI	GCAATG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	2 cut(s)	43, 168
Bst2UI	CCWGG	2 cut(s)	77, 307
Bst4CI	ACNGT	2 cut(s)	103, 245
Bst6I	CTCTTC	1 cut(s)	507
BstBAI	YACGTR	1 cut(s)	327
BstC8I	GCNNGC	2 cut(s)	379, 394
BstDEI	CTNAG	3 cut(s)	36, 255, 401
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	2 cut(s)	46, 171
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	2 cut(s)	43, 168
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	77, 307
BstSCI	CCNGG	2 cut(s)	75, 305
BstV1I	GCAGC	1 cut(s)	514
BstV2I	GAAGAC	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	470
BsuI	GTATCC	1 cut(s)	262
BsuTUI	ATCGAT	1 cut(s)	470
BtsCI	GGATG	1 cut(s)	235
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	379, 394
Cfr13I	GGNCC	1 cut(s)	337
ClaI	ATCGAT	1 cut(s)	470
Csp6I	GTAC	4 cut(s)	73, 157, 328, 398
CviAII	CATG	1 cut(s)	423
CviJI	RGCY	7 cut(s)	59, 110, 209, 276, 377, 436, 541
CviKI_1	RGCY	7 cut(s)	59, 110, 209, 276, 377, 436, 541
CviQI	GTAC	4 cut(s)	73, 157, 328, 398
DdeI	CTNAG	3 cut(s)	36, 255, 401
DpnI	GATC	2 cut(s)	45, 170
DpnII	GATC	2 cut(s)	43, 168
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Ecl136II	GAGCTC	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	337
Eco53kI	GAGCTC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	248
EcoICRI	GAGCTC	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	75, 305
EcoT38I	GRGCYC	1 cut(s)	438
FaeI	CATG	1 cut(s)	426
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FatI	CATG	1 cut(s)	422
Fnu4HI	GCNGC	1 cut(s)	528
FokI	GGATG	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	1 cut(s)	528
FspBI	CTAG	2 cut(s)	224, 374
GluI	GCNGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	532
Hin1II	CATG	1 cut(s)	426
HinfI	GANTC	1 cut(s)	504
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	37, 148, 404
Hpy188III	TCNNGA	3 cut(s)	133, 266, 549
Hpy8I	GTNNAC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	103, 245
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	2 cut(s)	344, 381
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	3 cut(s)	36, 255, 401
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	43, 168
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	3 cut(s)	64, 433, 441
Lsp1109I	GCAGC	1 cut(s)	514
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	2 cut(s)	224, 374
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	2 cut(s)	45, 170
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	2 cut(s)	43, 168
MboII	GAAGA	4 cut(s)	37, 104, 208, 524
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	2 cut(s)	137, 312
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	366, 424, 556
MslI	CAYNNNNRTG	1 cut(s)	470
MspR9I	CCNGG	2 cut(s)	77, 307
MvaI	CCWGG	2 cut(s)	77, 307
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	2 cut(s)	43, 168
NlaIII	CATG	1 cut(s)	426
NlaIV	GGNNCC	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	507
PfeI	GAWTC	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	529
Ppu21I	YACGTR	1 cut(s)	327
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	75, 305
PspGI	CCWGG	2 cut(s)	75, 305
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	337
PsrI	GAACNNNNNNTAC	2 cut(s)	311, 343
PsyI	GACNNNGTC	1 cut(s)	31
RsaI	GTAC	4 cut(s)	74, 158, 329, 399
RsaNI	GTAC	4 cut(s)	73, 157, 328, 398
RseI	CAYNNNNRTG	1 cut(s)	470
SacI	GAGCTC	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	507
SatI	GCNGC	1 cut(s)	528
Sau3AI	GATC	2 cut(s)	43, 168
Sau96I	GGNCC	1 cut(s)	337
ScrFI	CCNGG	2 cut(s)	77, 307
SduI	GDGCHC	1 cut(s)	438
SfaNI	GCATC	1 cut(s)	89
SinI	GGWCC	1 cut(s)	337
SmiMI	CAYNNNNRTG	1 cut(s)	470
Sse9I	AATT	2 cut(s)	137, 312
SsiI	CCGC	1 cut(s)	517
SspMI	CTAG	2 cut(s)	224, 374
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	2 cut(s)	75, 305
TaaI	ACNGT	2 cut(s)	103, 245
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	470
TasI	AATT	2 cut(s)	137, 312
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	504
TseI	GCWGC	1 cut(s)	527
TspDTI	ATGAA	4 cut(s)	165, 209, 237, 464
TspGWI	ACGGA	2 cut(s)	428, 524
Tth111I	GACNNNGTC	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	337
XspI	CTAG	2 cut(s)	224, 374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.