Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Forward (+)

45767455 .. 45771326

Gene Structure 3872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G023360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAGAGTCCTTGAAAATGTCATACTTGATTATAGACTAATTTTTCTGGTTATTTTCCCTTTACCATTTTCAGATATATCCAAAGTGGCACAACATGTGAAAGTGAGACAAAGGGTTGTAGCTACTGCAGTTACATATATGAGGCGTGTGTATACCAGGAAGACTATGTCTGAGTATGATCCACGCCTTGTGGCTCCAACCTGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTTCAGGCTAAACTTCTTGTATTTTACATCAAGAAATTATATTCTGATGAAAAGTATAGGTATGAGATCAAAGACATACTTGAAATGGAGATGAAGATTTTAGAAGCTCTCAACTATTATCTAGTTATATACCATCCTTACCGTTCATTGTCTCAGTTGCTTCAGGATACAGGCTTGAATGATATATCTTTGACACAAGTAACCTGGGGAATTGTGAATGACACGTACAAGATGGACCTTGCACTTGTACATCCTCCACACCTTATTGCTCTAGCTTGCATATACATTGCCAGCGTACTCAGAGAAAAAGACACCACGGCATGGTTTGAGGAGCTCCGTGTGGATATGAATGTGGTGAAAAACATATCGATGGAGATATTAGATTTCTACGAAAACCACAGAATGATCACGGAAGAGCGGTGTAATGCTGCTCTCAACAAGCTACCCTCCAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

231

Amino Acids

27.14

Weight (kDa)

7.68

Isoelectric Point (pI)

39.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	26 - 120	1.4e-18	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AccB7I	CCANNNNNTGG	1 cut(s)	558
AccBSI	CCGCTC	1 cut(s)	655
AccI	GTMKAC	1 cut(s)	152
AciI	CCGC	1 cut(s)	655
AclWI	GGATC	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	383
AfaI	GTAC	4 cut(s)	209, 464, 486, 534
AfiI	CCNNNNNNNGG	1 cut(s)	558
AflIII	ACRYGT	2 cut(s)	94, 459
AgsI	TTSAA	3 cut(s)	14, 320, 415
AjnI	CCWGG	3 cut(s)	155, 210, 440
AluBI	AGCT	5 cut(s)	122, 344, 512, 571, 679
AluI	AGCT	5 cut(s)	122, 344, 512, 571, 679
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	2 cut(s)	100, 393
AlwI	GGATC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	472
AsuHPI	GGTGA	1 cut(s)	604
AvaII	GGWCC	1 cut(s)	472
BanII	GRGCYC	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	1 cut(s)	652
BccI	CCATC	3 cut(s)	378, 463, 601
BceAI	ACGGC	1 cut(s)	570
BciT130I	CCWGG	3 cut(s)	157, 212, 442
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	1 cut(s)	642
BcoDI	GTCTC	2 cut(s)	100, 393
BfaI	CTAG	2 cut(s)	359, 509
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	1 cut(s)	666
BlsI	GCNGC	1 cut(s)	667
Bme1390I	CCNGG	3 cut(s)	157, 212, 442
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	472
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	3 cut(s)	157, 212, 442
BmsI	GCATC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	670
Bsa29I	ATCGAT	1 cut(s)	605
BsaAI	YACGTR	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	441, 552
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	3 cut(s)	157, 212, 442
BseCI	ATCGAT	1 cut(s)	605
BseDI	CCNNGG	2 cut(s)	441, 552
BseGI	GGATG	2 cut(s)	370, 487
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	3 cut(s)	162, 404, 550
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	1 cut(s)	652
BshVI	ATCGAT	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	573
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	2 cut(s)	100, 393
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp1407I	TGTACA	1 cut(s)	484
Bsp143I	GATC	3 cut(s)	178, 303, 642
BspACI	CCGC	1 cut(s)	655
BspCNI	CTCAG	3 cut(s)	163, 403, 549
BspDI	ATCGAT	1 cut(s)	605
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	173
BspQI	GCTCTTC	1 cut(s)	645
BsrBI	CCGCTC	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	522
BsrGI	TGTACA	1 cut(s)	484
BssECI	CCNNGG	2 cut(s)	441, 552
BssMI	GATC	3 cut(s)	178, 303, 642
BssNAI	GTATAC	1 cut(s)	153
Bst1107I	GTATAC	1 cut(s)	153
Bst2UI	CCWGG	3 cut(s)	157, 212, 442
Bst4CI	ACNGT	2 cut(s)	238, 380
Bst6I	CTCTTC	1 cut(s)	645
BstAUI	TGTACA	1 cut(s)	484
BstBAI	YACGTR	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	514, 529
BstDEI	CTNAG	3 cut(s)	171, 390, 536
BstDSI	CCRYGG	1 cut(s)	552
BstF5I	GGATG	2 cut(s)	370, 487
BstKTI	GATC	3 cut(s)	181, 306, 645
BstMAI	GTCTC	2 cut(s)	100, 393
BstMBI	GATC	3 cut(s)	178, 303, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNI	CCWGG	3 cut(s)	157, 212, 442
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	3 cut(s)	155, 210, 440
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	652
BstV2I	GAAGAC	1 cut(s)	167
BstZ17I	GTATAC	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	605
BsuI	GTATCC	1 cut(s)	397
BsuTUI	ATCGAT	1 cut(s)	605
BtgI	CCRYGG	1 cut(s)	552
BtsCI	GGATG	2 cut(s)	370, 487
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	514, 529
Cfr13I	GGNCC	1 cut(s)	472
ClaI	ATCGAT	1 cut(s)	605
Csp6I	GTAC	4 cut(s)	208, 463, 485, 533
CviAII	CATG	2 cut(s)	95, 558
CviJI	RGCY	8 cut(s)	122, 194, 245, 344, 411, 512, 571, 679
CviKI_1	RGCY	8 cut(s)	122, 194, 245, 344, 411, 512, 571, 679
CviQI	GTAC	4 cut(s)	208, 463, 485, 533
DdeI	CTNAG	3 cut(s)	171, 390, 536
DpnI	GATC	3 cut(s)	180, 305, 644
DpnII	GATC	3 cut(s)	178, 303, 642
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Ecl136II	GAGCTC	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	383
EcoICRI	GAGCTC	1 cut(s)	571
EcoRII	CCWGG	3 cut(s)	155, 210, 440
EcoT38I	GRGCYC	1 cut(s)	573
FaeI	CATG	2 cut(s)	98, 561
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	2 cut(s)	94, 557
FbaI	TGATCA	1 cut(s)	642
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	1 cut(s)	666
FokI	GGATG	2 cut(s)	357, 474
FriOI	GRGCYC	1 cut(s)	573
Fsp4HI	GCNGC	1 cut(s)	666
FspBI	CTAG	2 cut(s)	359, 509
GluI	GCNGC	1 cut(s)	666
GsuI	CTGGAG	1 cut(s)	670
Hin1II	CATG	2 cut(s)	98, 561
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	1 cut(s)	604
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	4 cut(s)	73, 172, 283, 539
Hpy188III	TCNNGA	3 cut(s)	268, 401, 687
Hpy8I	GTNNAC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	238, 380
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	3 cut(s)	128, 479, 516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	3 cut(s)	171, 390, 536
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	2 cut(s)	98, 561
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	3 cut(s)	178, 303, 642
LguI	GCTCTTC	1 cut(s)	645
LmnI	GCTCC	3 cut(s)	199, 568, 576
Lsp1109I	GCAGC	1 cut(s)	652
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	359, 509
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	2 cut(s)	130, 436
MalI	GATC	3 cut(s)	180, 305, 644
MbiI	CCGCTC	1 cut(s)	655
MboI	GATC	3 cut(s)	178, 303, 642
MboII	GAAGA	4 cut(s)	172, 239, 343, 662
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	3 cut(s)	39, 272, 447
MlyI	GAGTC	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	135, 501, 559, 694
MslI	CAYNNNNRTG	1 cut(s)	605
MspR9I	CCNGG	3 cut(s)	157, 212, 442
MvaI	CCWGG	3 cut(s)	157, 212, 442
MwoI	GCNNNNNNNGC	1 cut(s)	221
NdeII	GATC	3 cut(s)	178, 303, 642
NlaIII	CATG	2 cut(s)	98, 561
NlaIV	GGNNCC	1 cut(s)	195
NspI	RCATGY	1 cut(s)	98
PciI	ACATGT	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	645
PflFI	GACNNNGTC	1 cut(s)	166
PflMI	CCANNNNNTGG	1 cut(s)	558
PkrI	GCNGC	1 cut(s)	667
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
Ppu21I	YACGTR	1 cut(s)	462
PscI	ACATGT	1 cut(s)	94
Psp124BI	GAGCTC	1 cut(s)	573
Psp6I	CCWGG	3 cut(s)	155, 210, 440
PspGI	CCWGG	3 cut(s)	155, 210, 440
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	130
PsyI	GACNNNGTC	1 cut(s)	166
RsaI	GTAC	4 cut(s)	209, 464, 486, 534
RsaNI	GTAC	4 cut(s)	208, 463, 485, 533
RseI	CAYNNNNRTG	1 cut(s)	605
SacI	GAGCTC	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	645
SatI	GCNGC	1 cut(s)	666
Sau3AI	GATC	3 cut(s)	178, 303, 642
Sau96I	GGNCC	1 cut(s)	472
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	3 cut(s)	157, 212, 442
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	1 cut(s)	224
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	472
SmiMI	CAYNNNNRTG	1 cut(s)	605
Sse9I	AATT	3 cut(s)	39, 272, 447
SsiI	CCGC	1 cut(s)	655
SspMI	CTAG	2 cut(s)	359, 509
SstI	GAGCTC	1 cut(s)	573
StyD4I	CCNGG	3 cut(s)	155, 210, 440
TaaI	ACNGT	2 cut(s)	238, 380
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	605
TasI	AATT	3 cut(s)	39, 272, 447
TatI	WGTACW	1 cut(s)	484
TseI	GCWGC	1 cut(s)	665
TspDTI	ATGAA	4 cut(s)	300, 344, 372, 599
TspGWI	ACGGA	2 cut(s)	563, 662
Tth111I	GACNNNGTC	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	472
XceI	RCATGY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	2 cut(s)	359, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.