Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Forward (+)

22585387 .. 22588359

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGTAGGCAGTGCTTGCAGGGAGATTTCATAATAGGCATTGTTTGGCCCTTGTTGGCTTTGGATGGAAATACATCTCAGGTAGATGGTGATGATGTTGACTGGGATACTGATTATGAGCTTGAGATTGAAAACTTCACTTTATCTTCTTCAGCTAATCCAGGCTCTGGGAGCCTAGCCCATCATCAGGACCTTCCCAAACCAAAGTTTCTGATCATTTTGTCAGCATGGGATTTTCTCATAATATGGTTGCCAAAGCCATCCAAGAACATGCCTGCTCAAATTTCAAAGGCAGAAGATGGCCATCTTCCCCTTGAAGAGATGCATACACATCTGCGGAGTGAGTATCCTTGGAAGAATAAAAGGAAACTTTGTGAATCTTCATTGCTGAAAAGGAAAAGGATTATGGGAGATGGAAACCAGATCATAGGGGAAGATGCTGGTGCAATTCATCTCCCAAATCCAATGAATGGGTTTGGGACTCCAGCTGATCTCTGTCAAATCCACAGAAGTCTTCCAGAGGCAGCCACACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

178

Amino Acids

19.82

Weight (kDa)

5.27

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	167, 470
AciI	CCGC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	282
AcuI	CTGAAG	1 cut(s)	135
AfiI	CCNNNNNNNGG	3 cut(s)	167, 187, 470
AgsI	TTSAA	3 cut(s)	131, 288, 317
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	3 cut(s)	121, 155, 488
AluI	AGCT	3 cut(s)	121, 155, 488
AlwNI	CAGNNNCTG	1 cut(s)	167
AoxI	GGCC	2 cut(s)	47, 301
ApeKI	GCWGC	1 cut(s)	524
ApoI	RAATTY	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	48, 190
AsuHPI	GGTGA	1 cut(s)	101
AvaII	GGWCC	1 cut(s)	190
BalI	TGGCCA	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	506
BccI	CCATC	7 cut(s)	59, 80, 189, 268, 293, 312, 407
BciT130I	CCWGG	1 cut(s)	162
BciVI	GTATCC	2 cut(s)	100, 357
BclI	TGATCA	1 cut(s)	213
BfaI	CTAG	1 cut(s)	176
BfuI	GTATCC	2 cut(s)	100, 357
BisI	GCNGC	1 cut(s)	525
BlsI	GCNGC	1 cut(s)	526
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	48, 190
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	312, 427
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	143
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 187, 470
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	383
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	2 cut(s)	70, 260
BseJI	GATNNNNATC	1 cut(s)	303
BseLI	CCNNNNNNNGG	3 cut(s)	167, 187, 470
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	49, 303
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	167, 187, 470
BsmFI	GGGAC	1 cut(s)	493
BsnI	GGCC	2 cut(s)	49, 303
Bsp143I	GATC	3 cut(s)	213, 423, 490
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	2 cut(s)	49, 303
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	173
BsrDI	GCAATG	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	3 cut(s)	213, 423, 490
BssT1I	CCWWGG	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	162
Bst6I	CTCTTC	1 cut(s)	312
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	17, 276
BstDEI	CTNAG	1 cut(s)	78
BstF5I	GGATG	2 cut(s)	70, 260
BstKTI	GATC	3 cut(s)	216, 426, 493
BstMBI	GATC	3 cut(s)	213, 423, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 171
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	506
BsuI	GTATCC	2 cut(s)	100, 357
BsuRI	GGCC	2 cut(s)	49, 303
BtsCI	GGATG	2 cut(s)	70, 260
BtsI	GCAGTG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	17
Cac8I	GCNNGC	2 cut(s)	17, 276
CaiI	CAGNNNCTG	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	48, 190
CviAII	CATG	2 cut(s)	228, 271
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	215, 425, 492
DpnII	GATC	3 cut(s)	213, 423, 490
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	190
Eco57I	CTGAAG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	327
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	2 cut(s)	231, 274
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	2 cut(s)	227, 270
FbaI	TGATCA	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	525
FokI	GGATG	2 cut(s)	77, 247
Fsp4HI	GCNGC	1 cut(s)	525
FspBI	CTAG	1 cut(s)	176
GluI	GCNGC	1 cut(s)	525
GsuI	CTGGAG	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	49, 303
Hin1II	CATG	2 cut(s)	231, 274
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	377, 481
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	2 cut(s)	188, 518
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	203
HpyCH4V	TGCA	3 cut(s)	19, 325, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 171
HpyF3I	CTNAG	1 cut(s)	78
Hsp92II	CATG	2 cut(s)	231, 274
Ksp22I	TGATCA	1 cut(s)	213
Kzo9I	GATC	3 cut(s)	213, 423, 490
LmnI	GCTCC	1 cut(s)	171
LweI	GCATC	2 cut(s)	312, 427
MaeI	CTAG	1 cut(s)	176
MalI	GATC	3 cut(s)	215, 425, 492
MboI	GATC	3 cut(s)	213, 423, 490
MboII	GAAGA	9 cut(s)	138, 141, 299, 308, 329, 367, 372, 446, 506
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	2 cut(s)	282, 447
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	475
MnlI	CCTC	1 cut(s)	514
Mox20I	TGGCCA	1 cut(s)	303
Mph1103I	ATGCAT	1 cut(s)	327
MscI	TGGCCA	1 cut(s)	303
Msp20I	TGGCCA	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	488
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	16, 171
NdeII	GATC	3 cut(s)	213, 423, 490
NlaIII	CATG	2 cut(s)	231, 274
NlaIV	GGNNCC	1 cut(s)	173
NsiI	ATGCAT	1 cut(s)	327
NspI	RCATGY	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	377
PflMI	CCANNNNNTGG	2 cut(s)	167, 470
PkrI	GCNGC	1 cut(s)	526
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PpuMI	RGGWCCY	1 cut(s)	190
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	2 cut(s)	48, 190
PspPPI	RGGWCCY	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	167
PvuII	CAGCTG	1 cut(s)	488
SatI	GCNGC	1 cut(s)	525
Sau3AI	GATC	3 cut(s)	213, 423, 490
Sau96I	GGNCC	2 cut(s)	48, 190
SchI	GAGTC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	5 cut(s)	84, 123, 157, 195, 490
SfaNI	GCATC	2 cut(s)	312, 427
SinI	GGWCC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	2 cut(s)	282, 447
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	350
TasI	AATT	2 cut(s)	282, 447
TfiI	GAWTC	1 cut(s)	377
TscAI	CASTG	1 cut(s)	17
TseI	GCWGC	1 cut(s)	524
TspDTI	ATGAA	4 cut(s)	19, 372, 440, 482
TspRI	CASTG	1 cut(s)	17
Van91I	CCANNNNNTGG	2 cut(s)	167, 470
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	1 cut(s)	274
XspI	CTAG	1 cut(s)	176
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.