Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Reverse (-)

45729605 .. 45733018

Gene Structure 3414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG265900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGACTTCCACTTCTTGTTTTAGGAAGACTATGTCTGAGTATGATCCACGCCTTGTGGCTCCAACCTGCTTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTTCAGGCTAAACTTCTTGTATTTTACATCAAGAAATTATGTAATCACTTGTTACTGAATATAATAGATTTTTTCTCCTTCTTTTCTAATCATTTACTTTTTGGCATTCTATATATGGTTCGAAGCACTCACAGTCTTCTGTTTTTCTGTACAGATTCTGATGAAAAGTATAGGTATGAGATCAAAGACATACTTGAAATGGAGATGAAGATTTTAGAAGCTCTCAACTATTATCTAGTTATATACCATCCTTACCGTTCATTGTCTCAGTTGCTTCAGGATACAGGCTTGAATGATATAACTTTGACACAAGTAACCTGGGGAATTGTGAATGACACGTACAAGATGGACCTTGCACTTGTACATCCTCCACACCTTATTGCTCTAGCTTGCATATACATTGCCAGCGTACTCAGAGAAAAAGACACCACGGCATGGTTTGAGGAGCTCCGTGTGGATATGAATGTGGTGAAAAACATATCGATGGAGATATTAGATTTCTACGAAAACCACAGAATGATCACAGAAGAGCGGTATAATGCTGCTCTCAACAAGCTACCCTCCAGAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

224

Amino Acids

26.29

Weight (kDa)

5.8

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	8 - 113	4.4e-08	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AccB7I	CCANNNNNTGG	1 cut(s)	537
AccBSI	CCGCTC	1 cut(s)	634
AciI	CCGC	1 cut(s)	634
AclWI	GGATC	1 cut(s)	38
AcuI	CTGAAG	1 cut(s)	362
AfaI	GTAC	5 cut(s)	74, 253, 443, 465, 513
AfiI	CCNNNNNNNGG	1 cut(s)	537
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	299, 394
AjnI	CCWGG	2 cut(s)	75, 419
AluBI	AGCT	4 cut(s)	323, 491, 550, 658
AluI	AGCT	4 cut(s)	323, 491, 550, 658
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	1 cut(s)	372
AlwI	GGATC	1 cut(s)	38
AlwNI	CAGNNNCTG	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	644
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	1 cut(s)	583
AsuII	TTCGAA	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	552
BbsI	GAAGAC	2 cut(s)	32, 230
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	631
BccI	CCATC	3 cut(s)	357, 442, 580
BceAI	ACGGC	1 cut(s)	549
BciT130I	CCWGG	2 cut(s)	77, 421
BciVI	GTATCC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	621
BcoDI	GTCTC	1 cut(s)	372
BfaI	CTAG	2 cut(s)	338, 488
BfuAI	ACCTGC	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	376
BisI	GCNGC	1 cut(s)	645
BlsI	GCNGC	1 cut(s)	646
Bme1390I	CCNGG	2 cut(s)	77, 421
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	77, 421
BmsI	GCATC	1 cut(s)	89
BpiI	GAAGAC	2 cut(s)	32, 230
BpmI	CTGGAG	1 cut(s)	649
Bpu14I	TTCGAA	1 cut(s)	223
Bsa29I	ATCGAT	1 cut(s)	584
BsaAI	YACGTR	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	420, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	2 cut(s)	77, 421
BseCI	ATCGAT	1 cut(s)	584
BseDI	CCNNGG	2 cut(s)	420, 531
BseGI	GGATG	2 cut(s)	349, 466
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	3 cut(s)	27, 383, 529
BseRI	GAGGAG	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	631
BshVI	ATCGAT	1 cut(s)	584
BsiHKAI	GWGCWC	1 cut(s)	552
BslI	CCNNNNNNNGG	1 cut(s)	537
BsmAI	GTCTC	1 cut(s)	372
BsmI	GAATGC	1 cut(s)	207
Bsp119I	TTCGAA	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp1407I	TGTACA	2 cut(s)	251, 463
Bsp143I	GATC	3 cut(s)	43, 282, 621
BspACI	CCGC	1 cut(s)	634
BspCNI	CTCAG	3 cut(s)	28, 382, 528
BspDI	ATCGAT	1 cut(s)	584
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	38
BspQI	GCTCTTC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	223
BsrBI	CCGCTC	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	501
BsrGI	TGTACA	2 cut(s)	251, 463
BssECI	CCNNGG	2 cut(s)	420, 531
BssMI	GATC	3 cut(s)	43, 282, 621
Bst2UI	CCWGG	2 cut(s)	77, 421
Bst4CI	ACNGT	3 cut(s)	103, 236, 359
Bst6I	CTCTTC	1 cut(s)	624
BstAUI	TGTACA	2 cut(s)	251, 463
BstBAI	YACGTR	1 cut(s)	441
BstBI	TTCGAA	1 cut(s)	223
BstC8I	GCNNGC	2 cut(s)	493, 508
BstDEI	CTNAG	3 cut(s)	36, 369, 515
BstDSI	CCRYGG	1 cut(s)	531
BstF5I	GGATG	2 cut(s)	349, 466
BstKTI	GATC	3 cut(s)	46, 285, 624
BstMAI	GTCTC	1 cut(s)	372
BstMBI	GATC	3 cut(s)	43, 282, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	2 cut(s)	77, 421
BstSCI	CCNGG	2 cut(s)	75, 419
BstV1I	GCAGC	1 cut(s)	631
BstV2I	GAAGAC	2 cut(s)	32, 230
Bsu15I	ATCGAT	1 cut(s)	584
BsuI	GTATCC	1 cut(s)	376
BsuTUI	ATCGAT	1 cut(s)	584
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	349, 466
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	2 cut(s)	493, 508
CaiI	CAGNNNCTG	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	584
Csp6I	GTAC	5 cut(s)	73, 252, 442, 464, 512
CviAII	CATG	1 cut(s)	537
CviJI	RGCY	7 cut(s)	59, 110, 323, 390, 491, 550, 658
CviKI_1	RGCY	7 cut(s)	59, 110, 323, 390, 491, 550, 658
CviQI	GTAC	5 cut(s)	73, 252, 442, 464, 512
DdeI	CTNAG	3 cut(s)	36, 369, 515
DpnI	GATC	3 cut(s)	45, 284, 623
DpnII	GATC	3 cut(s)	43, 282, 621
Eam1104I	CTCTTC	1 cut(s)	624
EarI	CTCTTC	1 cut(s)	624
Ecl136II	GAGCTC	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	552
Eco47I	GGWCC	1 cut(s)	451
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	362
EcoICRI	GAGCTC	1 cut(s)	550
EcoRII	CCWGG	2 cut(s)	75, 419
EcoT38I	GRGCYC	1 cut(s)	552
FaeI	CATG	1 cut(s)	540
FalI	AAGNNNNNCTT	2 cut(s)	279, 311
FatI	CATG	1 cut(s)	536
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	1 cut(s)	645
FokI	GGATG	2 cut(s)	336, 453
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	1 cut(s)	645
FspBI	CTAG	2 cut(s)	338, 488
GluI	GCNGC	1 cut(s)	645
GsuI	CTGGAG	1 cut(s)	649
Hin1II	CATG	1 cut(s)	540
HinfI	GANTC	1 cut(s)	257
HphI	GGTGA	1 cut(s)	583
Hpy188I	TCNGA	3 cut(s)	37, 262, 518
Hpy188III	TCNNGA	3 cut(s)	133, 380, 666
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	3 cut(s)	103, 236, 359
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	2 cut(s)	458, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	3 cut(s)	36, 369, 515
HpySE526I	ACGT	1 cut(s)	440
Hsp92II	CATG	1 cut(s)	540
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	3 cut(s)	43, 282, 621
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	3 cut(s)	64, 547, 555
LpnPI	CCDG	9 cut(s)	62, 79, 89, 92, 365, 372, 406, 433, 520
Lsp1109I	GCAGC	1 cut(s)	631
LweI	GCATC	1 cut(s)	89
MaeI	CTAG	2 cut(s)	338, 488
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	153, 415
MalI	GATC	3 cut(s)	45, 284, 623
MbiI	CCGCTC	1 cut(s)	634
MboI	GATC	3 cut(s)	43, 282, 621
MboII	GAAGA	5 cut(s)	37, 104, 230, 322, 641
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	2 cut(s)	137, 426
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	3 cut(s)	480, 538, 673
MslI	CAYNNNNRTG	1 cut(s)	584
MspR9I	CCNGG	2 cut(s)	77, 421
Mva1269I	GAATGC	1 cut(s)	207
MvaI	CCWGG	2 cut(s)	77, 421
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	3 cut(s)	43, 282, 621
NlaIII	CATG	1 cut(s)	540
NlaIV	GGNNCC	1 cut(s)	60
NspV	TTCGAA	1 cut(s)	223
PciSI	GCTCTTC	1 cut(s)	624
PctI	GAATGC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	257
PflFI	GACNNNGTC	1 cut(s)	31
PflMI	CCANNNNNTGG	1 cut(s)	537
PkrI	GCNGC	1 cut(s)	646
Ppu21I	YACGTR	1 cut(s)	441
Psp124BI	GAGCTC	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	75, 419
PspGI	CCWGG	2 cut(s)	75, 419
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	451
PstNI	CAGNNNCTG	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	31
RsaI	GTAC	5 cut(s)	74, 253, 443, 465, 513
RsaNI	GTAC	5 cut(s)	73, 252, 442, 464, 512
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	552
SapI	GCTCTTC	1 cut(s)	624
SatI	GCNGC	1 cut(s)	645
Sau3AI	GATC	3 cut(s)	43, 282, 621
Sau96I	GGNCC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	77, 421
SduI	GDGCHC	1 cut(s)	552
SfaNI	GCATC	1 cut(s)	89
SfuI	TTCGAA	1 cut(s)	223
SinI	GGWCC	1 cut(s)	451
SmiMI	CAYNNNNRTG	1 cut(s)	584
Sse9I	AATT	2 cut(s)	137, 426
SsiI	CCGC	1 cut(s)	634
SspMI	CTAG	2 cut(s)	338, 488
SstI	GAGCTC	1 cut(s)	552
StyD4I	CCNGG	2 cut(s)	75, 419
TaaI	ACNGT	3 cut(s)	103, 236, 359
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	2 cut(s)	223, 584
TasI	AATT	2 cut(s)	137, 426
TatI	WGTACW	2 cut(s)	251, 463
TfiI	GAWTC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	4 cut(s)	279, 323, 351, 578
TspGWI	ACGGA	1 cut(s)	542
Tth111I	GACNNNGTC	1 cut(s)	31
Van91I	CCANNNNNTGG	1 cut(s)	537
VpaK11BI	GGWCC	1 cut(s)	451
XspI	CTAG	2 cut(s)	338, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.