Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Reverse (-)

19723388 .. 19725748

Gene Structure 2361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTGCCAATTTCTGGAATTCATCTCACTATAAACAGCTTTTGGATCCAGAAGAAGTCGACGTAGTTCATGATCTCGATAAAGAACGTGGAATCTCAATTGATGATTTTAAGCTCATCAAGTTCCATATGTCTAATCATATTATGAAATTGGCTCAGCACATTAAAGTGAGGCAAAGGGTTGTAGCTACTGCAATTACGTATATGAGACGGGTTTATATCAGAAAGAGTATGGTAGAGTTTGAGCCTCGACTTGTTGCTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATAGTGCAGGCCAGGAATCTTGTTTTTTACATCAAAAGATTGTATCCTGATGAGTACAACAAATATGAACTAAAGGATATATTAGGAATGGAGATGAAGGTGTTAGAAGCACTAGATTATTATCTGGTTGTGTTTCACCCTTACCGGTCATTATCGGAGTTTTTGCAAGATGCTGCATTAAACGATGTAAATATGAACCAGATTACATGGGGAATTGTTAATGATACTTATAAGATGGACCTCATTCTTGTACACCCTCCCTACCGCATAGCGCTAGCATGCATATACATAGCAAGTGTCCACAGAGAGAAAGATATCACTGCATGGTTTGAAGATCTTCATGAGGACATGAACTTGGTAAAGAATATTGCCATGGAGATACTGGACTTCTATGAGAACTACAGAACAATCACAGAGGAAAAAGTGAATTCTGCCTTCAGCAAATTGGCTTTGAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

253

Amino Acids

29.91

Weight (kDa)

6.0

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	1 - 94	1.6e-16	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	1 cut(s)	565
AclWI	GGATC	2 cut(s)	41, 54
AcsI	RAATTY	2 cut(s)	19, 727
AcuI	CTGAAG	2 cut(s)	312, 721
AfaI	GTAC	3 cut(s)	275, 356, 552
AfeI	AGCGCT	1 cut(s)	573
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgeI	ACCGGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	632, 754
AjnI	CCWGG	2 cut(s)	276, 311
AluBI	AGCT	5 cut(s)	40, 115, 188, 290, 757
AluI	AGCT	5 cut(s)	40, 115, 188, 290, 757
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	2 cut(s)	41, 54
Aor51HI	AGCGCT	1 cut(s)	573
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	2 cut(s)	5, 473
ApoI	RAATTY	2 cut(s)	19, 727
AsiGI	ACCGGT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	636
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	538
AsuHPI	GGTGA	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	538
BamHI	GGATCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	1 cut(s)	529
BciT130I	CCWGG	2 cut(s)	278, 313
BciVI	GTATCC	1 cut(s)	354
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	2 cut(s)	413, 575
BfmI	CTRYAG	2 cut(s)	700, 758
BfoI	RGCGCY	1 cut(s)	575
BfuI	GTATCC	1 cut(s)	354
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	2 cut(s)	6, 474
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	2 cut(s)	7, 475
Bme1390I	CCNGG	2 cut(s)	278, 313
Bme18I	GGWCC	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	538
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	2 cut(s)	278, 313
BmsI	GCATC	2 cut(s)	290, 460
BmtI	GCTAGC	1 cut(s)	578
Bpu1102I	GCTNAGC	1 cut(s)	156
BsaAI	YACGTR	2 cut(s)	201, 267
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	672
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	687
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	278, 313
BseDI	CCNNGG	1 cut(s)	672
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	687
BseXI	GCAGC	1 cut(s)	460
BsgI	GTGCAG	1 cut(s)	326
BshFI	GGCC	1 cut(s)	311
BshTI	ACCGGT	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	202
BsmBI	CGTCTC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	311
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	46, 73, 634
Bsp1720I	GCTNAGC	1 cut(s)	156
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	1 cut(s)	565
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	169
BspHI	TCATGA	2 cut(s)	70, 640
BspLI	GGNNCC	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	578
BspPI	GGATC	2 cut(s)	41, 54
BsrFI	RCCGGY	1 cut(s)	444
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	687
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	1 cut(s)	672
BssMI	GATC	3 cut(s)	46, 73, 634
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	2 cut(s)	278, 313
BstAUI	TGTACA	1 cut(s)	550
BstBAI	YACGTR	2 cut(s)	201, 267
BstC8I	GCNNGC	3 cut(s)	309, 576, 580
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	672
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	3 cut(s)	49, 76, 637
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	3 cut(s)	46, 73, 634
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	2 cut(s)	278, 313
BstNSI	RCATGY	1 cut(s)	582
BstSCI	CCNGG	2 cut(s)	276, 311
BstSFI	CTRYAG	2 cut(s)	700, 758
BstSNI	TACGTA	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	460
BstX2I	RGATCY	2 cut(s)	46, 634
BstYI	RGATCY	2 cut(s)	46, 634
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	1 cut(s)	672
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	1 cut(s)	618
Cac8I	GCNNGC	3 cut(s)	309, 576, 580
CciI	TCATGA	2 cut(s)	70, 640
CfoI	GCGC	1 cut(s)	574
Cfr10I	RCCGGY	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	538
Csp6I	GTAC	3 cut(s)	274, 355, 551
CspAI	ACCGGT	1 cut(s)	444
CviAII	CATG	7 cut(s)	71, 507, 579, 624, 641, 649, 673
CviQI	GTAC	3 cut(s)	274, 355, 551
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	48, 75, 636
DpnII	GATC	3 cut(s)	46, 73, 634
Eco105I	TACGTA	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	672
Eco32I	GATATC	1 cut(s)	616
Eco47I	GGWCC	1 cut(s)	538
Eco47III	AGCGCT	1 cut(s)	573
Eco57I	CTGAAG	2 cut(s)	312, 721
EcoRI	GAATTC	2 cut(s)	19, 727
EcoRII	CCWGG	2 cut(s)	276, 311
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	584
ErhI	CCWWGG	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	7 cut(s)	74, 510, 582, 627, 644, 652, 676
FatI	CATG	7 cut(s)	70, 506, 578, 623, 640, 648, 672
FauNDI	CATATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	2 cut(s)	6, 474
Fsp4HI	GCNGC	2 cut(s)	6, 474
FspBI	CTAG	2 cut(s)	413, 575
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	2 cut(s)	6, 474
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	311
HapII	CCGG	1 cut(s)	445
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	7 cut(s)	74, 510, 582, 627, 644, 652, 676
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	93, 316
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	3 cut(s)	61, 553, 601
Hpy188I	TCNGA	2 cut(s)	224, 457
Hpy188III	TCNNGA	6 cut(s)	16, 50, 71, 77, 347, 641
Hpy8I	GTNNAC	3 cut(s)	61, 553, 601
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	391, 745
HpyCH4IV	ACGT	4 cut(s)	63, 88, 200, 266
HpyCH4V	TGCA	6 cut(s)	194, 307, 466, 476, 582, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	4 cut(s)	63, 88, 200, 266
Hsp92II	CATG	7 cut(s)	74, 510, 582, 627, 644, 652, 676
HspAI	GCGC	1 cut(s)	572
Kzo9I	GATC	3 cut(s)	46, 73, 634
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	2 cut(s)	290, 460
MaeI	CTAG	2 cut(s)	413, 575
MaeII	ACGT	4 cut(s)	63, 88, 200, 266
MalI	GATC	3 cut(s)	48, 75, 636
MboI	GATC	3 cut(s)	46, 73, 634
MboII	GAAGA	4 cut(s)	65, 305, 629, 644
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	2 cut(s)	46, 634
MluCI	AATT	8 cut(s)	10, 19, 99, 149, 195, 513, 727, 743
MnlI	CCTC	6 cut(s)	165, 258, 551, 567, 637, 709
Mph1103I	ATGCAT	1 cut(s)	584
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	4 cut(s)	111, 165, 479, 519
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	2 cut(s)	278, 313
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	2 cut(s)	278, 313
MwoI	GCNNNNNNNGC	1 cut(s)	287
NcoI	CCATGG	1 cut(s)	672
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	3 cut(s)	46, 73, 634
NheI	GCTAGC	1 cut(s)	574
NlaIII	CATG	7 cut(s)	74, 510, 582, 627, 644, 652, 676
NlaIV	GGNNCC	1 cut(s)	48
NsiI	ATGCAT	1 cut(s)	584
NspI	RCATGY	1 cut(s)	582
PaeI	GCATGC	1 cut(s)	582
PagI	TCATGA	2 cut(s)	70, 640
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	93, 316
PflMI	CCANNNNNTGG	1 cut(s)	15
PinAI	ACCGGT	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	7, 475
Ppu21I	YACGTR	2 cut(s)	201, 267
PsiI	TTATAA	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	276, 311
PspGI	CCWGG	2 cut(s)	276, 311
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	538
PsuI	RGATCY	2 cut(s)	46, 634
RsaI	GTAC	3 cut(s)	275, 356, 552
RsaNI	GTAC	3 cut(s)	274, 355, 551
RseI	CAYNNNNRTG	1 cut(s)	167
SalI	GTCGAC	1 cut(s)	59
SaqAI	TTAA	4 cut(s)	111, 165, 479, 519
SatI	GCNGC	2 cut(s)	6, 474
Sau3AI	GATC	3 cut(s)	46, 73, 634
Sau96I	GGNCC	1 cut(s)	538
ScrFI	CCNGG	2 cut(s)	278, 313
SfaNI	GCATC	2 cut(s)	290, 460
SfcI	CTRYAG	2 cut(s)	700, 758
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	1 cut(s)	167
SnaBI	TACGTA	1 cut(s)	201
SphI	GCATGC	1 cut(s)	582
Sse9I	AATT	8 cut(s)	10, 19, 99, 149, 195, 513, 727, 743
SsiI	CCGC	1 cut(s)	565
SspI	AATATT	1 cut(s)	667
SspMI	CTAG	2 cut(s)	413, 575
StyD4I	CCNGG	2 cut(s)	276, 311
StyI	CCWWGG	1 cut(s)	672
TaiI	ACGT	4 cut(s)	66, 91, 203, 269
TaqI	TCGA	3 cut(s)	60, 78, 250
TasI	AATT	8 cut(s)	10, 19, 99, 149, 195, 513, 727, 743
TatI	WGTACW	2 cut(s)	354, 550
TfiI	GAWTC	2 cut(s)	93, 316
Tru1I	TTAA	4 cut(s)	111, 165, 479, 519
Tru9I	TTAA	4 cut(s)	111, 165, 479, 519
TscAI	CASTG	1 cut(s)	625
TseI	GCWGC	2 cut(s)	5, 473
TspDTI	ATGAA	8 cut(s)	12, 59, 161, 381, 410, 509, 629, 665
TspRI	CASTG	1 cut(s)	625
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	538
XapI	RAATTY	2 cut(s)	19, 727
XceI	RCATGY	1 cut(s)	582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	679
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	2 cut(s)	413, 575
Zsp2I	ATGCAT	1 cut(s)	584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.