Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Reverse (-)

24644411 .. 24648307

Gene Structure 3897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1157700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTGCCAATTTCTGGACTTCGTCCCACTACAAACAGCTTTTGGATCAGGAAGACGTGGATGTCGTATCCCCGCTTGATAGAGAGAAGGGCATCACTCTTGAAGATTTCAAGCTCATAAAGATGCAAATGGCTAGCTATATATCAAAATTGGCCCAACATGTAAAAGTGAGACAAAGGGTAGTAGCTACCGCAGTTACATATATGAGACGAGTGTACACCAAGAAGAGTATGTCTGAGTATGATCCACGTCTTGTAGCTCCAACCTGCCTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAAGCTAAACTTCTAGTATTTTACATAAAAAGGATTTATACCGATGATAAGTATAGATATGAGATCAAAGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTCAACTATTATCTGGTTGTATACCATCCTTATCGCTCATTGTCTCAGTTGCTTCAGGATGCAGGCTTAAACAATATAAGTATGACTGAGTTAACTTGGGGAGTTGTAAATGACACTTACAAGATGGACCTTGCACTTGTACATCCTCCACACCTGATTGCTTTAGCTTGCATATACATTGCTAGCGTGCTTAGAGATAAAGATACCACAGCATGGTTTGAAGAGCTTCGTGTGGACATGAATGTGGTGAAAAACATATCAATGGAGATACTAGATTTCTACGAAAACCAACGAACGATCCCAGATGAGAGGTTTAATTCTGCTCTCAATAAGCTTCCCCACAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

254

Amino Acids

29.58

Weight (kDa)

6.6

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	43 - 142	5.9e-20	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	15, 624
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	2 cut(s)	74, 192
AclWI	GGATC	3 cut(s)	54, 239, 703
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	3 cut(s)	218, 275, 552
AfiI	CCNNNNNNNGG	3 cut(s)	15, 277, 624
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	4 cut(s)	104, 112, 386, 632
AjiI	CACGTC	2 cut(s)	58, 251
AjnI	CCWGG	1 cut(s)	276
Alw26I	GTCTC	3 cut(s)	166, 202, 459
AlwI	GGATC	3 cut(s)	54, 239, 703
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	636
AspS9I	GGNCC	2 cut(s)	154, 538
AsuHPI	GGTGA	1 cut(s)	670
AsuNHI	GCTAGC	2 cut(s)	134, 593
AvaII	GGWCC	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	60
BccI	CCATC	2 cut(s)	444, 529
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	3 cut(s)	166, 202, 459
BfaI	CTAG	4 cut(s)	135, 320, 594, 683
BfuAI	ACCTGC	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	538
BmgBI	CACGTC	2 cut(s)	58, 251
BmgT120I	GGNCC	2 cut(s)	154, 538
BmrFI	CCNGG	1 cut(s)	278
BmsI	GCATC	4 cut(s)	102, 114, 290, 460
BmtI	GCTAGC	2 cut(s)	138, 597
BpiI	GAAGAC	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 277, 624
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	4 cut(s)	67, 436, 475, 553
BseLI	CCNNNNNNNGG	3 cut(s)	15, 277, 624
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	228, 470, 489
BshFI	GGCC	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	3 cut(s)	15, 277, 624
BsmAI	GTCTC	3 cut(s)	166, 202, 459
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	155
Bsp1407I	TGTACA	2 cut(s)	216, 550
Bsp143I	GATC	4 cut(s)	46, 244, 369, 708
BspACI	CCGC	2 cut(s)	74, 192
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	229, 469, 490
BspMI	ACCTGC	1 cut(s)	275
BspOI	GCTAGC	2 cut(s)	138, 597
BspPI	GGATC	3 cut(s)	54, 239, 703
BspQI	GCTCTTC	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	588
BsrGI	TGTACA	2 cut(s)	216, 550
BssMI	GATC	4 cut(s)	46, 244, 369, 708
BssNAI	GTATAC	1 cut(s)	433
Bst1107I	GTATAC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	221, 627
BstAUI	TGTACA	2 cut(s)	216, 550
BstC8I	GCNNGC	6 cut(s)	136, 309, 475, 580, 595, 599
BstDEI	CTNAG	4 cut(s)	237, 456, 498, 602
BstF5I	GGATG	4 cut(s)	67, 436, 475, 553
BstKTI	GATC	4 cut(s)	49, 247, 372, 711
BstMAI	GTCTC	3 cut(s)	166, 202, 459
BstMBI	GATC	4 cut(s)	46, 244, 369, 708
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	1 cut(s)	276
BstV2I	GAAGAC	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	2 cut(s)	58, 251
BtsCI	GGATG	4 cut(s)	67, 436, 475, 553
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	6 cut(s)	136, 309, 475, 580, 595, 599
Cfr13I	GGNCC	2 cut(s)	154, 538
Csp6I	GTAC	3 cut(s)	217, 274, 551
CviAII	CATG	3 cut(s)	161, 624, 649
CviQI	GTAC	3 cut(s)	217, 274, 551
DdeI	CTNAG	4 cut(s)	237, 456, 498, 602
DpnI	GATC	4 cut(s)	48, 246, 371, 710
DpnII	GATC	4 cut(s)	46, 244, 369, 708
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	2 cut(s)	221, 627
EarI	CTCTTC	2 cut(s)	221, 627
Eco47I	GGWCC	1 cut(s)	538
Eco57I	CTGAAG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	3 cut(s)	164, 627, 652
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 366, 398
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	3 cut(s)	160, 623, 648
FauI	CCCGC	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	4 cut(s)	74, 423, 482, 540
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	4 cut(s)	135, 320, 594, 683
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	155
Hin1II	CATG	3 cut(s)	164, 627, 652
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	1 cut(s)	743
HpaI	GTTAAC	1 cut(s)	504
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	5 cut(s)	217, 219, 433, 504, 646
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	4 cut(s)	16, 50, 101, 467
Hpy8I	GTNNAC	5 cut(s)	217, 219, 433, 504, 646
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	2 cut(s)	57, 250
HpyCH4V	TGCA	5 cut(s)	127, 307, 473, 545, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	4 cut(s)	237, 456, 498, 602
HpySE526I	ACGT	2 cut(s)	57, 250
Hsp92II	CATG	3 cut(s)	164, 627, 652
KspAI	GTTAAC	1 cut(s)	504
Kzo9I	GATC	4 cut(s)	46, 244, 369, 708
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	1 cut(s)	265
LweI	GCATC	4 cut(s)	102, 114, 290, 460
MaeI	CTAG	4 cut(s)	135, 320, 594, 683
MaeII	ACGT	2 cut(s)	57, 250
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	4 cut(s)	48, 246, 371, 710
MboI	GATC	4 cut(s)	46, 244, 369, 708
MboII	GAAGA	6 cut(s)	65, 116, 238, 305, 409, 644
MluCI	AATT	3 cut(s)	10, 149, 727
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	2 cut(s)	567, 714
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	3 cut(s)	479, 503, 726
MslI	CAYNNNNRTG	3 cut(s)	122, 653, 671
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	4 cut(s)	46, 244, 369, 708
NheI	GCTAGC	2 cut(s)	134, 593
NlaIII	CATG	3 cut(s)	164, 627, 652
NspI	RCATGY	1 cut(s)	164
PciI	ACATGT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	636
PflFI	GACNNNGTC	1 cut(s)	22
PflMI	CCANNNNNTGG	2 cut(s)	15, 624
PkrI	GCNGC	1 cut(s)	7
PscI	ACATGT	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	154, 538
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	3 cut(s)	218, 275, 552
RsaNI	GTAC	3 cut(s)	217, 274, 551
RseI	CAYNNNNRTG	3 cut(s)	122, 653, 671
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	3 cut(s)	479, 503, 726
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	46, 244, 369, 708
Sau96I	GGNCC	2 cut(s)	154, 538
ScrFI	CCNGG	1 cut(s)	278
SfaNI	GCATC	4 cut(s)	102, 114, 290, 460
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	3 cut(s)	122, 653, 671
Sse9I	AATT	3 cut(s)	10, 149, 727
SsiI	CCGC	2 cut(s)	74, 192
SspMI	CTAG	4 cut(s)	135, 320, 594, 683
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	2 cut(s)	60, 253
TasI	AATT	3 cut(s)	10, 149, 727
TatI	WGTACW	2 cut(s)	216, 550
Tru1I	TTAA	3 cut(s)	479, 503, 726
Tru9I	TTAA	3 cut(s)	479, 503, 726
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	410, 665
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	22
Van91I	CCANNNNNTGG	2 cut(s)	15, 624
VpaK11BI	GGWCC	1 cut(s)	538
XceI	RCATGY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	432
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	4 cut(s)	135, 320, 594, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.