Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001521.1

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Reverse (-)

55642 .. 58660

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001521.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggcttccaatttctggacttcgtctcactacaaacagcttttggaccaggaagatgtggatgttgtgctcccacttgataaagagaagggcatcactcttgaagacttcaagctcatcaagatgcatatggccaattatatatccaaagtggcacaacttgtgaaagtgagacaaagggttgtagctactgcagttacatatatgaggcgtgtgtataccaggaagactatgtctgagtatgatccacgccttgtggctccaacctgcttgtacctggcatcaaaagcagaagaaagcacagttcaggctaaacttcttgtattttacatcaagaaattatattctgatgaaaagtataggtatgagatcaaagacatactggaaatggagatgaagattttagaagctctcaactattatctagttatataccatccttaccgttcattgtctcagttgcttcaggatacaggcttgaatgatataactatgacacaagtaacctggggaattgtgaatgacacgtacaagatggaccttgcacttgtatatcctccacaccttattgctctagcttgcatatacattgccagcgtactcagagaaaaggacaccacggcatggtttgaggagctccgtgtggatatgaatgtggtgaaaaacatatcgatggagatattagatttctacgaaaaccacagaaccacggaagagcggtgtaatgctgctctcaacaagctaccctccaaaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

252

Amino Acids

29.54

Weight (kDa)

6.54

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	15, 624
AccBSI	CCGCTC	1 cut(s)	718
AccI	GTMKAC	1 cut(s)	218
AciI	CCGC	1 cut(s)	718
AclWI	GGATC	1 cut(s)	239
AcoI	YGGCCR	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	3 cut(s)	275, 530, 600
AfiI	CCNNNNNNNGG	2 cut(s)	15, 624
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	104, 112, 481
AjnI	CCWGG	4 cut(s)	48, 221, 276, 506
AluBI	AGCT	7 cut(s)	40, 115, 188, 410, 578, 637, 742
AluI	AGCT	7 cut(s)	40, 115, 188, 410, 578, 637, 742
Alw21I	GWGCWC	2 cut(s)	72, 639
Alw26I	GTCTC	3 cut(s)	30, 166, 459
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	728
AspS9I	GGNCC	2 cut(s)	46, 538
AsuHPI	GGTGA	1 cut(s)	670
AvaII	GGWCC	2 cut(s)	46, 538
BalI	TGGCCA	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	2 cut(s)	111, 233
Bbv12I	GWGCWC	2 cut(s)	72, 639
BbvI	GCAGC	1 cut(s)	715
BccI	CCATC	3 cut(s)	444, 529, 667
BceAI	ACGGC	1 cut(s)	636
BciT130I	CCWGG	4 cut(s)	50, 223, 278, 508
BciVI	GTATCC	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	30, 166, 459
BfaI	CTAG	2 cut(s)	425, 575
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	463
BisI	GCNGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	730
Bme1390I	CCNGG	4 cut(s)	50, 223, 278, 508
Bme18I	GGWCC	2 cut(s)	46, 538
BmgT120I	GGNCC	2 cut(s)	46, 538
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	4 cut(s)	50, 223, 278, 508
BmsI	GCATC	3 cut(s)	102, 114, 290
BpiI	GAAGAC	2 cut(s)	111, 233
Bsa29I	ATCGAT	1 cut(s)	671
BsaAI	YACGTR	1 cut(s)	528
BsaJI	CCNNGG	3 cut(s)	507, 618, 708
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 624
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	4 cut(s)	50, 223, 278, 508
BseCI	ATCGAT	1 cut(s)	671
BseDI	CCNNGG	3 cut(s)	507, 618, 708
BseGI	GGATG	2 cut(s)	67, 436
BseLI	CCNNNNNNNGG	2 cut(s)	15, 624
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	228, 470, 616
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	647
BseXI	GCAGC	1 cut(s)	715
BshFI	GGCC	1 cut(s)	134
BshVI	ATCGAT	1 cut(s)	671
BsiHKAI	GWGCWC	2 cut(s)	72, 639
BslI	CCNNNNNNNGG	2 cut(s)	15, 624
BsmAI	GTCTC	3 cut(s)	30, 166, 459
BsmBI	CGTCTC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	72, 639
Bsp143I	GATC	2 cut(s)	244, 369
BspACI	CCGC	1 cut(s)	718
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	3 cut(s)	229, 469, 615
BspDI	ATCGAT	1 cut(s)	671
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	239
BspQI	GCTCTTC	1 cut(s)	708
BsrBI	CCGCTC	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	3 cut(s)	507, 618, 708
BssMI	GATC	2 cut(s)	244, 369
BssNAI	GTATAC	1 cut(s)	219
Bst1107I	GTATAC	1 cut(s)	219
Bst2UI	CCWGG	4 cut(s)	50, 223, 278, 508
Bst4CI	ACNGT	2 cut(s)	304, 446
Bst6I	CTCTTC	1 cut(s)	708
BstBAI	YACGTR	1 cut(s)	528
BstC8I	GCNNGC	2 cut(s)	580, 595
BstDEI	CTNAG	3 cut(s)	237, 456, 602
BstDSI	CCRYGG	2 cut(s)	618, 708
BstF5I	GGATG	2 cut(s)	67, 436
BstKTI	GATC	2 cut(s)	247, 372
BstMAI	GTCTC	3 cut(s)	30, 166, 459
BstMBI	GATC	2 cut(s)	244, 369
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	4 cut(s)	50, 223, 278, 508
BstSCI	CCNGG	4 cut(s)	48, 221, 276, 506
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	715
BstV2I	GAAGAC	2 cut(s)	111, 233
BstZ17I	GTATAC	1 cut(s)	219
Bsu15I	ATCGAT	1 cut(s)	671
BsuI	GTATCC	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	134
BsuTUI	ATCGAT	1 cut(s)	671
BtgI	CCRYGG	2 cut(s)	618, 708
BtsCI	GGATG	2 cut(s)	67, 436
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	2 cut(s)	580, 595
Cfr13I	GGNCC	2 cut(s)	46, 538
ClaI	ATCGAT	1 cut(s)	671
Csp6I	GTAC	3 cut(s)	274, 529, 599
CviAII	CATG	1 cut(s)	624
CviQI	GTAC	3 cut(s)	274, 529, 599
DdeI	CTNAG	3 cut(s)	237, 456, 602
DpnI	GATC	2 cut(s)	246, 371
DpnII	GATC	2 cut(s)	244, 369
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	2 cut(s)	46, 538
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	637
EcoRII	CCWGG	4 cut(s)	48, 221, 276, 506
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	1 cut(s)	627
FatI	CATG	1 cut(s)	623
FauNDI	CATATG	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	1 cut(s)	729
FokI	GGATG	2 cut(s)	74, 423
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	1 cut(s)	729
FspBI	CTAG	2 cut(s)	425, 575
GluI	GCNGC	1 cut(s)	729
HaeIII	GGCC	1 cut(s)	134
Hin1II	CATG	1 cut(s)	627
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	1 cut(s)	219
Hpy188I	TCNGA	3 cut(s)	238, 349, 605
Hpy188III	TCNNGA	5 cut(s)	16, 101, 121, 334, 467
Hpy8I	GTNNAC	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	304, 446
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	4 cut(s)	127, 194, 545, 582
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	3 cut(s)	237, 456, 602
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	1 cut(s)	627
Kzo9I	GATC	2 cut(s)	244, 369
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	4 cut(s)	75, 265, 634, 642
Lsp1109I	GCAGC	1 cut(s)	715
LweI	GCATC	3 cut(s)	102, 114, 290
MaeI	CTAG	2 cut(s)	425, 575
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	2 cut(s)	196, 502
MalI	GATC	2 cut(s)	246, 371
MbiI	CCGCTC	1 cut(s)	718
MboI	GATC	2 cut(s)	244, 369
MboII	GAAGA	6 cut(s)	65, 116, 238, 305, 409, 725
MhlI	GDGCHC	2 cut(s)	72, 639
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	4 cut(s)	10, 136, 338, 513
MluNI	TGGCCA	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	4 cut(s)	201, 567, 625, 757
Mox20I	TGGCCA	1 cut(s)	134
Mph1103I	ATGCAT	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	134
MslI	CAYNNNNRTG	2 cut(s)	122, 671
Msp20I	TGGCCA	1 cut(s)	134
MspR9I	CCNGG	4 cut(s)	50, 223, 278, 508
MvaI	CCWGG	4 cut(s)	50, 223, 278, 508
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	2 cut(s)	244, 369
NlaIII	CATG	1 cut(s)	627
NlaIV	GGNNCC	1 cut(s)	261
NsiI	ATGCAT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	708
PflFI	GACNNNGTC	2 cut(s)	22, 232
PflMI	CCANNNNNTGG	2 cut(s)	15, 624
PkrI	GCNGC	1 cut(s)	730
Ppu21I	YACGTR	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	4 cut(s)	48, 221, 276, 506
PspGI	CCWGG	4 cut(s)	48, 221, 276, 506
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	46, 538
PstI	CTGCAG	1 cut(s)	196
PsyI	GACNNNGTC	2 cut(s)	22, 232
RsaI	GTAC	3 cut(s)	275, 530, 600
RsaNI	GTAC	3 cut(s)	274, 529, 599
RseI	CAYNNNNRTG	2 cut(s)	122, 671
SacI	GAGCTC	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	708
SatI	GCNGC	1 cut(s)	729
Sau3AI	GATC	2 cut(s)	244, 369
Sau96I	GGNCC	2 cut(s)	46, 538
ScrFI	CCNGG	4 cut(s)	50, 223, 278, 508
SduI	GDGCHC	2 cut(s)	72, 639
SfaNI	GCATC	3 cut(s)	102, 114, 290
SfcI	CTRYAG	1 cut(s)	192
SinI	GGWCC	2 cut(s)	46, 538
SmiMI	CAYNNNNRTG	2 cut(s)	122, 671
Sse9I	AATT	4 cut(s)	10, 136, 338, 513
SsiI	CCGC	1 cut(s)	718
SspMI	CTAG	2 cut(s)	425, 575
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	4 cut(s)	48, 221, 276, 506
TaaI	ACNGT	2 cut(s)	304, 446
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	671
TasI	AATT	4 cut(s)	10, 136, 338, 513
TseI	GCWGC	1 cut(s)	728
TspDTI	ATGAA	4 cut(s)	366, 410, 438, 665
TspGWI	ACGGA	2 cut(s)	629, 725
Tth111I	GACNNNGTC	2 cut(s)	22, 232
Van91I	CCANNNNNTGG	2 cut(s)	15, 624
VpaK11BI	GGWCC	2 cut(s)	46, 538
XmiI	GTMKAC	1 cut(s)	218
XspI	CTAG	2 cut(s)	425, 575
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.