Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015336

Physical Location & Seq

Genomic Coordinates Forward (+)

20070489 .. 20071682

Gene Structure 1194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTGTCCTTCTGGTAGAATCGCGATTCCGATAACCACCACCGCGAATCCAAATTTCCGACCAGCTTTCGAAATCATCGACACAGATCACGACGGTAAAATCAGCAGCGACGATCTCCGTGCATTCTACGCCGGAATCCCTTCCGGTGAAAACAACGACGAGACGATGATCGGAACGATGATATCAGTAGCGGACGCGAACAAAGACGGATTCGTTGAGTTCGATGAATTCGAGAAAGTTCTAGAAACGACGCCGTTTTCTAGATCTGGTAACGGAGGAGACGATGGATTGATGAAAGATGTGTTTAAGGTGATGGATAAAGACGGAGATGGGAGACTGAGTTACGGAGATCTGAAGAGTTATATGGATTCGGCTGGTTTAGCTGTAACCGACGATGAAATCAAATCTATGATTCGATTAGCCGGTGGTGATTTAAACGACGGCGTTTCGTTCGACGGTCTGCTTAAGATCTTTGGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0042538 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

160

Amino Acids

17.21

Weight (kDa)

4.22

Isoelectric Point (pI)

25.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	20 - 80	6e-12	EF-hand domain pair
EF-hand_5	PF13202	22 - 42	4.3e-06	EF hand
EF-hand_7	PF13499	98 - 158	5.6e-09	EF-hand domain pair
EF-hand_6	PF13405	98 - 126	5.6e-06	EF-hand domain
EF-hand_1	PF00036	98 - 123	7.3e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49480
fragaria_vesca	FvH4_4g19970
malus_domestica	MD04G1036600.v1.1 MD13G1151300.v1.1 MD16G1152300.v1.1
prunus_persica	Prupe.1G115600_v2.0.a1
pyrus_communis	pycom16g12960
rosa_chinensis	RchiOBHm_Chr4g0425671
rosa_laevigata	RLG00000007348
rosa_multiflora	Rmu_co8455781.1_g000002
rosa_rugosa	Rorug04G0204700
rosa_samantha	Rh4AG262000 Rh4BG268100 Rh4CG279200 Rh4DG263800
rosa_wichuraiana	Rw4G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	23, 44, 197
AciI	CCGC	2 cut(s)	42, 191
AcsI	RAATTY	2 cut(s)	52, 227
AcuI	CTGAAG	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	251
AflII	CTTAAG	1 cut(s)	464
AluBI	AGCT	2 cut(s)	65, 383
AluI	AGCT	2 cut(s)	65, 383
Alw26I	GTCTC	3 cut(s)	155, 273, 328
ApeKI	GCWGC	1 cut(s)	105
ApoI	RAATTY	2 cut(s)	52, 227
Asp700I	GAANNNNTTC	1 cut(s)	139
AsuHPI	GGTGA	3 cut(s)	158, 322, 440
AsuII	TTCGAA	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	3 cut(s)	278, 307, 323
BceAI	ACGGC	2 cut(s)	238, 457
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BcoDI	GTCTC	3 cut(s)	155, 273, 328
BfaI	CTAG	2 cut(s)	242, 261
BfrI	CTTAAG	1 cut(s)	464
BglII	AGATCT	3 cut(s)	263, 349, 468
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bse118I	RCCGGY	1 cut(s)	422
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	117
Bsh1236I	CGCG	3 cut(s)	23, 44, 197
BsiSI	CCGG	3 cut(s)	132, 144, 423
BsmAI	GTCTC	3 cut(s)	155, 273, 328
BsmBI	CGTCTC	2 cut(s)	155, 273
BsmI	GAATGC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	69
Bsp143I	GATC	6 cut(s)	85, 112, 168, 263, 349, 468
Bsp68I	TCGCGA	1 cut(s)	23
BspACI	CCGC	2 cut(s)	42, 191
BspCNI	CTCAG	1 cut(s)	330
BspFNI	CGCG	3 cut(s)	23, 44, 197
BspT104I	TTCGAA	1 cut(s)	69
BspTI	CTTAAG	1 cut(s)	464
BsrFI	RCCGGY	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	422
BssMI	GATC	6 cut(s)	85, 112, 168, 263, 349, 468
BssNI	GRCGYC	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	95, 458
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	251
BstAFI	CTTAAG	1 cut(s)	464
BstBI	TTCGAA	1 cut(s)	69
BstDEI	CTNAG	1 cut(s)	338
BstFNI	CGCG	3 cut(s)	23, 44, 197
BstKTI	GATC	6 cut(s)	88, 115, 171, 266, 352, 471
BstMAI	GTCTC	3 cut(s)	155, 273, 328
BstMBI	GATC	6 cut(s)	85, 112, 168, 263, 349, 468
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 380
BstUI	CGCG	3 cut(s)	23, 44, 197
BstV1I	GCAGC	1 cut(s)	117
BstX2I	RGATCY	3 cut(s)	263, 349, 468
BstYI	RGATCY	3 cut(s)	263, 349, 468
BtuMI	TCGCGA	1 cut(s)	23
Cfr10I	RCCGGY	1 cut(s)	422
CseI	GACGC	2 cut(s)	203, 259
CviJI	RGCY	4 cut(s)	65, 374, 383, 422
CviKI_1	RGCY	4 cut(s)	65, 374, 383, 422
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	6 cut(s)	87, 114, 170, 265, 351, 470
DpnII	GATC	6 cut(s)	85, 112, 168, 263, 349, 468
DraI	TTTAAA	1 cut(s)	435
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco32I	GATATC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	374
EcoRI	GAATTC	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	183
Esp3I	CGTCTC	2 cut(s)	155, 273
FaiI	YATR	3 cut(s)	363, 365, 410
Fnu4HI	GCNGC	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	2 cut(s)	242, 261
GluI	GCNGC	1 cut(s)	106
HapII	CCGG	3 cut(s)	132, 144, 423
HgaI	GACGC	2 cut(s)	203, 259
Hin1I	GRCGYC	1 cut(s)	251
HinfI	GANTC	7 cut(s)	18, 25, 46, 135, 210, 368, 412
HpaII	CCGG	3 cut(s)	132, 144, 423
HphI	GGTGA	3 cut(s)	158, 322, 440
Hpy188I	TCNGA	4 cut(s)	30, 59, 173, 354
Hpy188III	TCNNGA	5 cut(s)	22, 89, 232, 242, 261
Hpy99I	CGWCG	7 cut(s)	95, 113, 161, 253, 395, 443, 458
HpyAV	CCTTC	2 cut(s)	18, 150
HpyCH4III	ACNGT	2 cut(s)	95, 458
HpyCH4V	TGCA	1 cut(s)	122
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 380
HpyF3I	CTNAG	1 cut(s)	338
Hsp92I	GRCGYC	1 cut(s)	251
Kzo9I	GATC	6 cut(s)	85, 112, 168, 263, 349, 468
LpnPI	CCDG	6 cut(s)	75, 145, 157, 252, 360, 436
Lsp1109I	GCAGC	1 cut(s)	117
MaeI	CTAG	2 cut(s)	242, 261
MaeIII	GTNAC	3 cut(s)	269, 341, 385
MalI	GATC	6 cut(s)	87, 114, 170, 265, 351, 470
MboI	GATC	6 cut(s)	85, 112, 168, 263, 349, 468
MboII	GAAGA	1 cut(s)	367
MflI	RGATCY	3 cut(s)	263, 349, 468
MluCI	AATT	2 cut(s)	52, 227
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	139
MseI	TTAA	3 cut(s)	306, 434, 465
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	3 cut(s)	132, 144, 423
Mva1269I	GAATGC	1 cut(s)	122
MvnI	CGCG	3 cut(s)	23, 44, 197
MwoI	GCNNNNNNNGC	2 cut(s)	128, 380
NdeII	GATC	6 cut(s)	85, 112, 168, 263, 349, 468
NruI	TCGCGA	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	69
PcsI	WCGNNNNNNNCGW	4 cut(s)	75, 219, 228, 279
PctI	GAATGC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	139
PfeI	GAWTC	7 cut(s)	18, 25, 46, 135, 210, 368, 412
PkrI	GCNGC	1 cut(s)	107
PsuI	RGATCY	3 cut(s)	263, 349, 468
RruI	TCGCGA	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	306, 434, 465
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	6 cut(s)	85, 112, 168, 263, 349, 468
SetI	ASST	3 cut(s)	67, 312, 385
SfuI	TTCGAA	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	52, 227
SsiI	CCGC	2 cut(s)	42, 191
SspMI	CTAG	2 cut(s)	242, 261
TaaI	ACNGT	2 cut(s)	95, 458
TaqI	TCGA	6 cut(s)	69, 78, 222, 231, 415, 453
TasI	AATT	2 cut(s)	52, 227
TfiI	GAWTC	7 cut(s)	18, 25, 46, 135, 210, 368, 412
Tru1I	TTAA	3 cut(s)	306, 434, 465
Tru9I	TTAA	3 cut(s)	306, 434, 465
TseI	GCWGC	1 cut(s)	105
TspDTI	ATGAA	3 cut(s)	240, 308, 411
TspGWI	ACGGA	5 cut(s)	107, 222, 288, 339, 360
Vha464I	CTTAAG	1 cut(s)	464
XapI	RAATTY	2 cut(s)	52, 227
XbaI	TCTAGA	2 cut(s)	241, 260
XmnI	GAANNNNTTC	1 cut(s)	139
XspI	CTAG	2 cut(s)	242, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.