Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0015336

Physical Location & Seq

Genomic Coordinates Reverse (-)

9130535 .. 9131457

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGTGTCCCTCTGGCCGCACCCTCTGCGCAGAGACCGCCACGACGACGACCATGACCTCAGATTTCCGGCCAGCCTTCGACGCCCTCGACTCCGACCGCGACGGCAAGATCAGCAAAGACGATCTCCGGGCCTTCTACGCCGGATTTTCCAGCTCCGGCGCCGACGAAAATCTCATCGGATCGATGATGTCGGTCGCCGATTCCAACAAGGACGGCTTCGTCCAATACGACGAGTTCGAGCGCGTTTTGGGCGGCGGCGGCGGTGCAAGAAGCTCGTGGGGAGTGATGGAGGACGCGTTTAAGGTTATGGACAAGGACGGGGATGGGAAGCTCGGCCATGAGGATTTGAAGAGCTACATGAGCGCGGCTGGCTTCGCCGCCACTGATGAAGACATCAAGGCCATGATTATATTGGGAGGTGGCGATGACAACCAAGGCGTACATCGTGGCATATTAAGCACATACTACAGTACAGATACCATATCAGCATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0042538 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

165

Amino Acids

17.46

Weight (kDa)

4.35

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49480
fragaria_vesca	FvH4_4g19970
malus_domestica	MD04G1036600.v1.1 MD13G1151300.v1.1 MD16G1152300.v1.1
prunus_persica	Prupe.1G115600_v2.0.a1
pyrus_communis	pycom16g12960
rosa_chinensis	RchiOBHm_Chr4g0425671
rosa_laevigata	RLG00000007348
rosa_multiflora	Rmu_co8455781.1_g000002
rosa_rugosa	Rorug04G0204700
rosa_samantha	Rh4AG262000 Rh4BG268100 Rh4CG279200 Rh4DG263800
rosa_wichuraiana	Rw4G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	218
Acc16I	TGCGCA	1 cut(s)	28
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	4 cut(s)	99, 243, 296, 365
AciI	CCGC	9 cut(s)	16, 36, 97, 252, 255, 258, 261, 365, 378
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	3 cut(s)	13, 68, 334
AcyI	GRCGYC	2 cut(s)	81, 159
AfaI	GTAC	2 cut(s)	441, 472
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	349
AluBI	AGCT	4 cut(s)	153, 273, 331, 354
AluI	AGCT	4 cut(s)	153, 273, 331, 354
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	187
AoxI	GGCC	5 cut(s)	13, 68, 129, 334, 399
AspLEI	GCGC	4 cut(s)	29, 161, 243, 365
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	274
BbsI	GAAGAC	1 cut(s)	396
BccI	CCATC	2 cut(s)	280, 317
BceAI	ACGGC	2 cut(s)	118, 229
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	466
BfoI	RGCGCY	1 cut(s)	162
BisI	GCNGC	6 cut(s)	16, 253, 256, 259, 366, 378
BlsI	GCNGC	6 cut(s)	17, 254, 257, 260, 367, 379
Bme1390I	CCNGG	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	182
BsaHI	GRCGYC	2 cut(s)	81, 159
BsaI	GGTCTC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	433
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
BseCI	ATCGAT	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	1 cut(s)	328
BseMII	CTCAG	1 cut(s)	72
Bsh1236I	CGCG	4 cut(s)	99, 243, 296, 365
Bsh1285I	CGRYCG	2 cut(s)	97, 195
BshFI	GGCC	5 cut(s)	15, 70, 131, 336, 401
BshNI	GGYRCC	1 cut(s)	158
BshVI	ATCGAT	1 cut(s)	182
BsiEI	CGRYCG	2 cut(s)	97, 195
BsiSI	CCGG	4 cut(s)	67, 127, 141, 156
BsmAI	GTCTC	1 cut(s)	26
BsnI	GGCC	5 cut(s)	15, 70, 131, 336, 401
Bso31I	GGTCTC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	108, 121, 179
BspACI	CCGC	9 cut(s)	16, 36, 97, 252, 255, 258, 261, 365, 378
BspANI	GGCC	5 cut(s)	15, 70, 131, 336, 401
BspCNI	CTCAG	1 cut(s)	71
BspDI	ATCGAT	1 cut(s)	182
BspFNI	CGCG	4 cut(s)	99, 243, 296, 365
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	344
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	433
BssMI	GATC	3 cut(s)	108, 121, 179
BssNI	GRCGYC	2 cut(s)	81, 159
BssSI	CACGAG	1 cut(s)	274
BssT1I	CCWWGG	1 cut(s)	433
Bst2BI	CACGAG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	470
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	2 cut(s)	81, 159
BstAPI	GCANNNNNTGC	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	72, 370
BstDEI	CTNAG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	4 cut(s)	99, 243, 296, 365
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	4 cut(s)	29, 161, 243, 365
BstKTI	GATC	3 cut(s)	111, 124, 182
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	3 cut(s)	108, 121, 179
BstMCI	CGRYCG	2 cut(s)	97, 195
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	466
BstUI	CGCG	4 cut(s)	99, 243, 296, 365
BstV2I	GAAGAC	1 cut(s)	396
Bsu15I	ATCGAT	1 cut(s)	182
BsuRI	GGCC	5 cut(s)	15, 70, 131, 336, 401
BsuTUI	ATCGAT	1 cut(s)	182
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	72, 370
CfoI	GCGC	4 cut(s)	29, 161, 243, 365
Cfr13I	GGNCC	1 cut(s)	129
ClaI	ATCGAT	1 cut(s)	182
CseI	GACGC	2 cut(s)	89, 302
Csp6I	GTAC	2 cut(s)	440, 471
CviAII	CATG	4 cut(s)	52, 338, 358, 403
CviQI	GTAC	2 cut(s)	440, 471
DdeI	CTNAG	1 cut(s)	58
DinI	GGCGCC	1 cut(s)	160
DpnI	GATC	3 cut(s)	110, 123, 181
DpnII	GATC	3 cut(s)	108, 121, 179
DrdI	GACNNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	218
EaeI	YGGCCR	3 cut(s)	13, 68, 334
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	433
Eco31I	GGTCTC	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	433
EgeI	GGCGCC	1 cut(s)	160
EheI	GGCGCC	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	433
FaeI	CATG	4 cut(s)	55, 341, 361, 406
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	4 cut(s)	51, 337, 357, 402
Fnu4HI	GCNGC	6 cut(s)	16, 253, 256, 259, 366, 378
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	6 cut(s)	16, 253, 256, 259, 366, 378
FspI	TGCGCA	1 cut(s)	28
GlaI	GCGC	4 cut(s)	28, 160, 242, 364
GluI	GCNGC	6 cut(s)	16, 253, 256, 259, 366, 378
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	5 cut(s)	15, 70, 131, 336, 401
HapII	CCGG	4 cut(s)	67, 127, 141, 156
HgaI	GACGC	2 cut(s)	89, 302
HhaI	GCGC	4 cut(s)	29, 161, 243, 365
Hin1I	GRCGYC	2 cut(s)	81, 159
Hin1II	CATG	4 cut(s)	55, 341, 361, 406
Hin6I	GCGC	4 cut(s)	27, 159, 241, 363
HinP1I	GCGC	4 cut(s)	27, 159, 241, 363
HinfI	GANTC	2 cut(s)	89, 200
HpaII	CCGG	4 cut(s)	67, 127, 141, 156
Hpy188I	TCNGA	3 cut(s)	61, 94, 179
Hpy99I	CGWCG	6 cut(s)	46, 49, 83, 104, 167, 233
HpyAV	CCTTC	2 cut(s)	85, 142
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4V	TGCA	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	58
Hsp92I	GRCGYC	2 cut(s)	81, 159
Hsp92II	CATG	4 cut(s)	55, 341, 361, 406
HspAI	GCGC	4 cut(s)	27, 159, 241, 363
KasI	GGCGCC	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	108, 121, 179
LguI	GCTCTTC	1 cut(s)	344
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	7 cut(s)	80, 84, 140, 154, 163, 169, 354
MalI	GATC	3 cut(s)	110, 123, 181
MboI	GATC	3 cut(s)	108, 121, 179
MboII	GAAGA	2 cut(s)	361, 401
MluI	ACGCGT	1 cut(s)	294
Mly113I	GGCGCC	1 cut(s)	159
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	117, 228
MnlI	CCTC	7 cut(s)	19, 32, 67, 95, 283, 334, 410
MseI	TTAA	2 cut(s)	300, 455
MspI	CCGG	4 cut(s)	67, 127, 141, 156
MspR9I	CCNGG	1 cut(s)	128
MvnI	CGCG	4 cut(s)	99, 243, 296, 365
NarI	GGCGCC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	3 cut(s)	108, 121, 179
NlaIII	CATG	4 cut(s)	55, 341, 361, 406
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	312
NsbI	TGCGCA	1 cut(s)	28
PciSI	GCTCTTC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	3 cut(s)	84, 225, 234
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	6 cut(s)	17, 254, 257, 260, 367, 379
PleI	GAGTC	1 cut(s)	83
PluTI	GGCGCC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	129
RsaI	GTAC	2 cut(s)	441, 472
RsaNI	GTAC	2 cut(s)	440, 471
SapI	GCTCTTC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	300, 455
SatI	GCNGC	6 cut(s)	16, 253, 256, 259, 366, 378
Sau3AI	GATC	3 cut(s)	108, 121, 179
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	7 cut(s)	59, 155, 275, 306, 333, 356, 421
SfcI	CTRYAG	1 cut(s)	466
SfoI	GGCGCC	1 cut(s)	160
SsiI	CCGC	9 cut(s)	16, 36, 97, 252, 255, 258, 261, 365, 378
SspDI	GGCGCC	1 cut(s)	158
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	433
TaaI	ACNGT	1 cut(s)	470
TaqI	TCGA	4 cut(s)	78, 87, 182, 237
TaqII	GACCGA	1 cut(s)	181
TatI	WGTACW	1 cut(s)	470
TauI	GCSGC	6 cut(s)	18, 255, 258, 261, 368, 380
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	2 cut(s)	300, 455
Tru9I	TTAA	2 cut(s)	300, 455
TscAI	CASTG	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.