Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015336

Physical Location & Seq

Genomic Coordinates Reverse (-)

16059159 .. 16059644

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007348

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGTCCCACCGGCCGAACCCTAACGTCGACGACGTTGACCTCTTCGTCCTCGTCTTCCGACCTCCGCCCCGCATTCGACGTCCTCGACGCCGACCGCGACGGTAAGATCAGCAAGGACGACCTCCGCGCCTTCTACGCCGGATTCTCCAGCTCCGGTGCCGACGAGAGCCTCATCCGGGCCATGATGTCCGCCGCCGACTCCAACTCCGACGGCTTCGTCGAGTACGATGAGTTCGAGCGCGTGCTCGCCTGTCAGAAACCCTCGGCCGCTGGCGGCGTCATGGAGGACGTGTTCAAGGTCATGGACCGCGACGGCGACGGCAAGCTCAGCCACGAAGATTTAAAGAGCTACATGAACTTGGCTGGGTTTCCGGCCACCGACGACGACATTGCGGCCATGATCAGATTGGCCGGCGGCGATGAAACTCATGGCGTCGACTACGCCGGGTTGCTGAAGATCCTGGCCGTTGATCAAGTCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0042538 GO:0043167 GO:0043169 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04014 ko04015 ko04016 ko04020 ko04022 ko04024 ko04070 ko04114 ko04218 ko04261 ko04270 ko04371 ko04626 ko04713 ko04720 ko04722 ko04728 ko04740 ko04744 ko04745 ko04750 ko04910 ko04912 ko04915 ko04916 ko04921 ko04922 ko04924 ko04925 ko04970 ko04971 ko05010 ko05031 ko05034 ko05133 ko05152 ko05167 ko05200 ko05214 ko05418 map04014 map04015 map04016 map04020 map04022 map04024 map04070 map04114 map04218 map04261 map04270 map04371 map04626 map04713 map04720 map04722 map04728 map04740 map04744 map04745 map04750 map04910 map04912 map04915 map04916 map04921 map04922 map04924 map04925 map04970 map04971 map05010 map05031 map05034 map05133 map05152 map05167 map05200 map05214 map05418

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7

Protein Analysis

162

Amino Acids

17.14

Weight (kDa)

4.31

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_7	PF13499	20 - 82	9.7e-14	EF-hand domain pair
EF-hand_5	PF13202	24 - 45	1.5e-06	EF hand
EF-hand_7	PF13499	95 - 148	3.6e-07	EF-hand domain pair
EF-hand_5	PF13202	95 - 117	5.8e-06	EF hand
EF-hand_6	PF13405	95 - 121	5.5e-06	EF-hand domain
EF-hand_1	PF00036	96 - 120	3.9e-06	EF hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49480
fragaria_vesca	FvH4_4g19970
malus_domestica	MD04G1036600.v1.1 MD13G1151300.v1.1 MD16G1152300.v1.1
prunus_persica	Prupe.1G115600_v2.0.a1
pyrus_communis	pycom16g12960
rosa_chinensis	RchiOBHm_Chr4g0425671
rosa_laevigata	RLG00000007348
rosa_multiflora	Rmu_co8455781.1_g000002
rosa_rugosa	Rorug04G0204700
rosa_samantha	Rh4AG262000 Rh4BG268100 Rh4CG279200 Rh4DG263800
rosa_wichuraiana	Rw4G022640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	46, 218
AatII	GACGTC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	2 cut(s)	29, 438
AccII	CGCG	4 cut(s)	99, 129, 243, 312
AclWI	GGATC	1 cut(s)	454
AcoI	YGGCCR	6 cut(s)	13, 267, 375, 396, 411, 465
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	4 cut(s)	81, 90, 279, 435
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	1 cut(s)	178
AflIII	ACRYGT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	298
AjiI	CACGTC	1 cut(s)	292
AjnI	CCWGG	1 cut(s)	462
AloI	GAACNNNNNNTCC	2 cut(s)	278, 310
AluBI	AGCT	4 cut(s)	153, 328, 351, 483
AluI	AGCT	4 cut(s)	153, 328, 351, 483
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	1 cut(s)	454
AoxI	GGCC	7 cut(s)	13, 180, 267, 375, 396, 411, 465
AspLEI	GCGC	2 cut(s)	131, 243
AspS9I	GGNCC	2 cut(s)	180, 307
AsuC2I	CCSGG	2 cut(s)	179, 448
AvaII	GGWCC	1 cut(s)	307
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	249
BceAI	ACGGC	4 cut(s)	229, 331, 337, 452
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BciT130I	CCWGG	1 cut(s)	464
BclI	TGATCA	2 cut(s)	402, 472
BcnI	CCSGG	2 cut(s)	179, 448
BfaI	CTAG	1 cut(s)	484
BisI	GCNGC	5 cut(s)	195, 270, 277, 396, 418
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	5 cut(s)	196, 271, 278, 397, 419
Bme1390I	CCNGG	3 cut(s)	179, 448, 464
Bme18I	GGWCC	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	180, 307
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	179, 448, 464
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	179, 448
BsaHI	GRCGYC	4 cut(s)	81, 90, 279, 435
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse118I	RCCGGY	2 cut(s)	11, 413
Bse3DI	GCAATG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	464
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	343
BseX3I	CGGCCG	2 cut(s)	13, 267
BseYI	CCCAGC	1 cut(s)	365
Bsh1236I	CGCG	4 cut(s)	99, 129, 243, 312
Bsh1285I	CGRYCG	3 cut(s)	16, 97, 270
BshFI	GGCC	7 cut(s)	15, 182, 269, 377, 398, 413, 467
BshNI	GGYRCC	1 cut(s)	158
BsiEI	CGRYCG	3 cut(s)	16, 97, 270
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	7 cut(s)	12, 141, 156, 178, 374, 414, 447
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	7 cut(s)	15, 182, 269, 377, 398, 413, 467
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	108, 402, 459, 472
Bsp1720I	GCTNAGC	1 cut(s)	329
BspANI	GGCC	7 cut(s)	15, 182, 269, 377, 398, 413, 467
BspCNI	CTCAG	1 cut(s)	342
BspFNI	CGCG	4 cut(s)	99, 129, 243, 312
BspLI	GGNNCC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	454
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	2 cut(s)	11, 413
BssAI	RCCGGY	2 cut(s)	11, 413
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	4 cut(s)	108, 402, 459, 472
BssNI	GRCGYC	4 cut(s)	81, 90, 279, 435
Bst2UI	CCWGG	1 cut(s)	464
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	49
BstACI	GRCGYC	4 cut(s)	81, 90, 279, 435
BstC8I	GCNNGC	5 cut(s)	245, 249, 274, 326, 415
BstDEI	CTNAG	1 cut(s)	329
BstF5I	GGATG	1 cut(s)	174
BstFNI	CGCG	4 cut(s)	99, 129, 243, 312
BstHHI	GCGC	2 cut(s)	131, 243
BstKTI	GATC	4 cut(s)	111, 405, 462, 475
BstMBI	GATC	4 cut(s)	108, 402, 459, 472
BstMCI	CGRYCG	3 cut(s)	16, 97, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 330
BstNI	CCWGG	1 cut(s)	464
BstSCI	CCNGG	3 cut(s)	177, 446, 462
BstUI	CGCG	4 cut(s)	99, 129, 243, 312
BstV2I	GAAGAC	1 cut(s)	48
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BstZI	CGGCCG	2 cut(s)	13, 267
BsuRI	GGCC	7 cut(s)	15, 182, 269, 377, 398, 413, 467
BtgZI	GCGATG	1 cut(s)	435
BtrI	CACGTC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	174
Cac8I	GCNNGC	5 cut(s)	245, 249, 274, 326, 415
CfoI	GCGC	2 cut(s)	131, 243
Cfr10I	RCCGGY	2 cut(s)	11, 413
Cfr13I	GGNCC	2 cut(s)	180, 307
CseI	GACGC	3 cut(s)	98, 268, 424
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	6 cut(s)	184, 283, 304, 355, 400, 431
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	4 cut(s)	110, 404, 461, 474
DpnII	GATC	4 cut(s)	108, 402, 459, 472
DraI	TTTAAA	1 cut(s)	345
DrdI	GACNNNNNNGTC	2 cut(s)	46, 218
DseDI	GACNNNNNNGTC	2 cut(s)	46, 218
EaeI	YGGCCR	6 cut(s)	13, 267, 375, 396, 411, 465
EagI	CGGCCG	2 cut(s)	13, 267
Eam1104I	CTCTTC	1 cut(s)	49
EarI	CTCTTC	1 cut(s)	49
EciI	GGCGGA	2 cut(s)	56, 181
EclXI	CGGCCG	2 cut(s)	13, 267
Eco47I	GGWCC	1 cut(s)	307
Eco52I	CGGCCG	2 cut(s)	13, 267
Eco57I	CTGAAG	1 cut(s)	476
EcoRII	CCWGG	1 cut(s)	462
FaeI	CATG	6 cut(s)	187, 286, 307, 358, 403, 434
FaiI	YATR	6 cut(s)	185, 284, 305, 356, 401, 432
FatI	CATG	6 cut(s)	183, 282, 303, 354, 399, 430
FauI	CCCGC	1 cut(s)	79
FbaI	TGATCA	2 cut(s)	402, 472
FblI	GTMKAC	2 cut(s)	29, 438
Fnu4HI	GCNGC	5 cut(s)	195, 270, 277, 396, 418
FokI	GGATG	1 cut(s)	161
Fsp4HI	GCNGC	5 cut(s)	195, 270, 277, 396, 418
FspBI	CTAG	1 cut(s)	484
GlaI	GCGC	2 cut(s)	130, 242
GluI	GCNGC	5 cut(s)	195, 270, 277, 396, 418
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	7 cut(s)	15, 182, 269, 377, 398, 413, 467
HapII	CCGG	7 cut(s)	12, 141, 156, 178, 374, 414, 447
HgaI	GACGC	3 cut(s)	98, 268, 424
HhaI	GCGC	2 cut(s)	131, 243
Hin1I	GRCGYC	4 cut(s)	81, 90, 279, 435
Hin1II	CATG	6 cut(s)	187, 286, 307, 358, 403, 434
Hin6I	GCGC	2 cut(s)	129, 241
HinP1I	GCGC	2 cut(s)	129, 241
HincII	GTYRAC	3 cut(s)	30, 39, 439
HindII	GTYRAC	3 cut(s)	30, 39, 439
HinfI	GANTC	2 cut(s)	144, 200
HpaII	CCGG	7 cut(s)	12, 141, 156, 178, 374, 414, 447
Hpy166II	GTNNAC	3 cut(s)	30, 39, 439
Hpy188I	TCNGA	4 cut(s)	61, 211, 258, 407
Hpy8I	GTNNAC	3 cut(s)	30, 39, 439
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	4 cut(s)	26, 35, 81, 291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 330
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	4 cut(s)	26, 35, 81, 291
Hsp92I	GRCGYC	4 cut(s)	81, 90, 279, 435
Hsp92II	CATG	6 cut(s)	187, 286, 307, 358, 403, 434
HspAI	GCGC	2 cut(s)	129, 241
KroI	GCCGGC	1 cut(s)	413
KroNI	GCCGGC	1 cut(s)	415
Ksp22I	TGATCA	2 cut(s)	402, 472
Kzo9I	GATC	4 cut(s)	108, 402, 459, 472
LmnI	GCTCC	1 cut(s)	158
MaeI	CTAG	1 cut(s)	484
MaeII	ACGT	4 cut(s)	26, 35, 81, 291
MalI	GATC	4 cut(s)	110, 404, 461, 474
MboI	GATC	4 cut(s)	108, 402, 459, 472
MboII	GAAGA	4 cut(s)	36, 48, 350, 469
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	3 cut(s)	84, 228, 234
MnlI	CCTC	8 cut(s)	52, 61, 74, 95, 134, 182, 274, 280
MroNI	GCCGGC	1 cut(s)	413
MseI	TTAA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	272
MspI	CCGG	7 cut(s)	12, 141, 156, 178, 374, 414, 447
MspR9I	CCNGG	3 cut(s)	179, 448, 464
Mva1269I	GAATGC	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	464
MvnI	CGCG	4 cut(s)	99, 129, 243, 312
MwoI	GCNNNNNNNGC	2 cut(s)	137, 330
NaeI	GCCGGC	1 cut(s)	415
NciI	CCSGG	2 cut(s)	179, 448
NdeII	GATC	4 cut(s)	108, 402, 459, 472
NgoMIV	GCCGGC	1 cut(s)	413
NlaIII	CATG	6 cut(s)	187, 286, 307, 358, 403, 434
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	6 cut(s)	32, 84, 96, 219, 225, 234
PctI	GAATGC	1 cut(s)	74
PdiI	GCCGGC	1 cut(s)	415
PfeI	GAWTC	1 cut(s)	144
PkrI	GCNGC	5 cut(s)	196, 271, 278, 397, 419
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	462
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	462
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	180, 307
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SalI	GTCGAC	2 cut(s)	28, 437
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	5 cut(s)	195, 270, 277, 396, 418
Sau3AI	GATC	4 cut(s)	108, 402, 459, 472
Sau96I	GGNCC	2 cut(s)	180, 307
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	3 cut(s)	179, 448, 464
SduI	GDGCHC	1 cut(s)	249
SgrDI	CGTCGACG	1 cut(s)	28
SinI	GGWCC	1 cut(s)	307
SspMI	CTAG	1 cut(s)	484
StyD4I	CCNGG	3 cut(s)	177, 446, 462
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	4 cut(s)	29, 38, 84, 294
TaqI	TCGA	6 cut(s)	29, 78, 87, 222, 237, 438
TauI	GCSGC	5 cut(s)	197, 272, 279, 398, 420
TfiI	GAWTC	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	371, 438
VpaK11BI	GGWCC	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmiI	GTMKAC	2 cut(s)	29, 438
XspI	CTAG	1 cut(s)	484
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.