AT5G49510

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015096
Physical Location & Seq
Forward (+)
20080600 .. 20083042
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49510.2

Sequence Viewer

Length: 588 bp
ATGTCGTCGTCTTCTCCGAGTGGAAGCGGTAGTGATTTGACTGAGAGAAGAGGGATCCCTGCCGCCAAATTCATCCAAGATGTGGAGACTTATCTCTCTCAGTCTGGTCTCGATCCTAACTCTGCTCTCGCCTTTCACCAAGAAAGGCTTCAGCAATATAAAGTTGTTGAGATGAAGCTTCTTGCTCAACAAAGGGATCTTCAGGCTAAAATCCCAGATATTGAAAAGTGTTTAGAGGTTGTTGCTACTTTGGAAGCAAAGAAGGGTACTGGTGAGGCGCTCTTAGCTGATTTTGAGGTGTCTGAAGGAATATATTCACGGGCCTGCATTGAAGACACAGACTCAGTGTGTTTGTGGTTGGGAGCTAATGTCATGCTGGAATATTCCTGTGAAGAGGCTTCAGCTCTTCTGAAAAACAATCTGGAAAATGCTAAAGCCAGCCTGGAGGTTCTTGTAGCTGATTTACAGTTCTTGAGGGATCAAGTCACAGTTACTCAGGTAACTATTGCACGTGTTTATAACTGGGATGTTCATCAAAGGAGGGTTAAACAAGTTACCCCTACTGCTATTGCTGTTGCAGATTCATGA

Protein Analysis

195

Amino Acids

21.47

Weight (kDa)

4.77

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 54 - 175 5.6e-31 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49510 AT5G49510
fragaria_vesca FvH4_4g20250
malus_domestica MD13G1150800.v1.1 MD16G1151300.v1.1
prunus_persica Prupe.1G115000_v2.0.a1
pyrus_communis pycom13g12960 pycom16g12930
rosa_chinensis RchiOBHm_Chr4g0425791
rosa_multiflora Rmu_sc0002094.1_g000001 Rmu_sc0010899.1_g000002
rosa_roxburghii Rroxscaffold_5G00367780
rosa_rugosa Rorug04G0206200
rosa_samantha Rh4AG263400 Rh4BG269300
rosa_wichuraiana Rw4G022730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 519
AccB7I CCANNNNNTGG 1 cut(s) 82
AciI CCGC 2 cut(s) 27, 63
AclWI GGATC 5 cut(s) 49, 62, 107, 204, 486
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 4 cut(s) 134, 185, 324, 384
AcvI CACGTG 1 cut(s) 512
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 511
AgsI TTSAA 2 cut(s) 224, 332
AjnI CCWGG 1 cut(s) 441
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 5 cut(s) 178, 287, 365, 404, 458
AluI AGCT 5 cut(s) 178, 287, 365, 404, 458
Alw26I GTCTC 2 cut(s) 80, 113
AlwI GGATC 5 cut(s) 49, 62, 107, 204, 486
AoxI GGCC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 68
Asp700I GAANNNNTTC 2 cut(s) 147, 313
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 128, 284
BamHI GGATCC 1 cut(s) 54
BbrPI CACGTG 1 cut(s) 512
BbsI GAAGAC 2 cut(s) 3, 339
BciT130I CCWGG 1 cut(s) 443
BcoDI GTCTC 2 cut(s) 80, 113
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 443
BmrI ACTGGG 1 cut(s) 532
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 2 cut(s) 3, 339
BpmI CTGGAG 1 cut(s) 464
BpuEI CTTGAG 1 cut(s) 493
BsaAI YACGTR 1 cut(s) 512
BsaBI GATNNNNATC 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 113
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse1I ACTGG 2 cut(s) 274, 527
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 1 cut(s) 443
BseGI GGATG 2 cut(s) 72, 532
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 4 cut(s) 33, 113, 357, 509
BseNI ACTGG 2 cut(s) 274, 527
BshFI GGCC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 2 cut(s) 80, 113
BsnI GGCC 1 cut(s) 323
Bso31I GGTCTC 1 cut(s) 113
Bsp143I GATC 4 cut(s) 54, 112, 196, 478
BspACI CCGC 2 cut(s) 27, 63
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 4 cut(s) 34, 112, 356, 508
BspHI TCATGA 1 cut(s) 584
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 5 cut(s) 49, 62, 107, 204, 486
BspQI GCTCTTC 1 cut(s) 411
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 2 cut(s) 274, 527
BssMI GATC 4 cut(s) 54, 112, 196, 478
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 2 cut(s) 468, 490
Bst6I CTCTTC 3 cut(s) 43, 387, 411
BstBAI YACGTR 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 325, 439
BstDEI CTNAG 5 cut(s) 42, 99, 283, 343, 495
BstF5I GGATG 2 cut(s) 72, 532
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 4 cut(s) 57, 115, 199, 481
BstMAI GTCTC 2 cut(s) 80, 113
BstMBI GATC 4 cut(s) 54, 112, 196, 478
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstNI CCWGG 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 441
BstV2I GAAGAC 2 cut(s) 3, 339
BstX2I RGATCY 2 cut(s) 54, 196
BstYI RGATCY 2 cut(s) 54, 196
BsuRI GGCC 1 cut(s) 323
BtsCI GGATG 2 cut(s) 72, 532
BtsIMutI CAGTG 1 cut(s) 351
Cac8I GCNNGC 2 cut(s) 325, 439
CciI TCATGA 1 cut(s) 584
CfoI GCGC 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 267
CviAII CATG 2 cut(s) 373, 585
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 5 cut(s) 42, 99, 283, 343, 495
DpnI GATC 4 cut(s) 56, 114, 198, 480
DpnII GATC 4 cut(s) 54, 112, 196, 478
Eam1104I CTCTTC 3 cut(s) 43, 387, 411
EarI CTCTTC 3 cut(s) 43, 387, 411
Eco31I GGTCTC 1 cut(s) 113
Eco57I CTGAAG 4 cut(s) 134, 185, 324, 384
Eco72I CACGTG 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 441
FaeI CATG 2 cut(s) 376, 588
FaiI YATR 5 cut(s) 159, 313, 374, 519, 586
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 2 cut(s) 372, 584
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 2 cut(s) 59, 539
Fsp4HI GCNGC 1 cut(s) 63
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 464
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 1 cut(s) 323
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 376, 588
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 2 cut(s) 341, 581
HphI GGTGA 2 cut(s) 128, 284
Hpy188I TCNGA 3 cut(s) 18, 304, 411
Hpy188III TCNNGA 4 cut(s) 110, 422, 472, 585
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 256, 299
HpyCH4III ACNGT 2 cut(s) 468, 490
HpyCH4IV ACGT 1 cut(s) 511
HpyCH4V TGCA 3 cut(s) 327, 509, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 5 cut(s) 42, 99, 283, 343, 495
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 2 cut(s) 376, 588
HspAI GCGC 1 cut(s) 278
Kzo9I GATC 4 cut(s) 54, 112, 196, 478
LguI GCTCTTC 1 cut(s) 411
LmnI GCTCC 1 cut(s) 362
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 4 cut(s) 484, 490, 499, 553
MalI GATC 4 cut(s) 56, 114, 198, 480
MboI GATC 4 cut(s) 54, 112, 196, 478
MboII GAAGA 6 cut(s) 3, 60, 191, 344, 398, 404
MflI RGATCY 2 cut(s) 54, 196
MluCI AATT 1 cut(s) 68
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 8 cut(s) 44, 229, 268, 289, 388, 439, 468, 534
MroXI GAANNNNTTC 2 cut(s) 147, 313
MseI TTAA 1 cut(s) 546
MspR9I CCNGG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 4 cut(s) 54, 112, 196, 478
NlaIII CATG 2 cut(s) 376, 588
NlaIV GGNNCC 1 cut(s) 56
NmuCI GTSAC 1 cut(s) 484
PagI TCATGA 1 cut(s) 584
PciSI GCTCTTC 1 cut(s) 411
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdmI GAANNNNTTC 2 cut(s) 147, 313
PfeI GAWTC 1 cut(s) 581
PflMI CCANNNNNTGG 1 cut(s) 82
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 1 cut(s) 335
PmaCI CACGTG 1 cut(s) 512
PmlI CACGTG 1 cut(s) 512
PpsI GAGTC 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 512
PsiI TTATAA 1 cut(s) 519
Psp6I CCWGG 1 cut(s) 441
PspCI CACGTG 1 cut(s) 512
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 1 cut(s) 321
PsuI RGATCY 2 cut(s) 54, 196
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SapI GCTCTTC 1 cut(s) 411
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 4 cut(s) 54, 112, 196, 478
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 1 cut(s) 68
SsiI CCGC 2 cut(s) 27, 63
SspI AATATT 1 cut(s) 383
StyD4I CCNGG 1 cut(s) 441
TaaI ACNGT 2 cut(s) 468, 490
TaiI ACGT 1 cut(s) 514
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 68
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 1 cut(s) 581
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 484
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 4 cut(s) 61, 188, 521, 573
TspRI CASTG 1 cut(s) 351
Van91I CCANNNNNTGG 1 cut(s) 82
XapI RAATTY 1 cut(s) 68
XmnI GAANNNNTTC 2 cut(s) 147, 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.