Rw4G022730

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0015096
Physical Location & Seq
Forward (+)
48228849 .. 48232185
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022730.1

Sequence Viewer

Length: 579 bp
ATGGCTACGTCGTCGTCGTCGTCGTCGGCAGAGGTGGTAACAGAGCGAAGAGGAATACCTGGAGCTCAGTTCGTAGAAGATGTGCAGACCTATCTCACCCAGACCGGCTTCGACTGTAACTCTGCCCTCGCTTTTCTCCAAGAAAGACTTCAGCAATACAAAATGGTTGAAATGAAACTTCAAGCTCAACAAAGGGAACTTCTGGCAAAGATTCCTGACATTGAGAAGTGCTTAGATGTTGTTGCCACGTTGCAAGCTAAGAAGGGTACTGGTGAGGCACTTATTACTGATTTTGAGATCTCTGAAGGGATATATTCACGAGCTAGCATTGAGGATACTGATTCAGTATGTTTATGGCTGGGAGCTAATGTCATGTTGGAGTATTCTTGTGAAGAGGCTACTGCCCTTCTACGAAAGAATTTAGATAATGCTAAAGCCAGTTTAGAAGTTCTTCTTGCTGATCTACAGTTCTTGAGAGATCAAGTAACAATTACCCAGGTAACAATTGCTCGGGTGTACAACTGGGACGTTCATCAGCGCAGACTCCGACAAGCTTCCCCTTCTGCTAAGGACTCCTGA

Protein Analysis

192

Amino Acids

21.41

Weight (kDa)

4.84

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 54 - 175 2.7e-30 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49510 AT5G49510
fragaria_vesca FvH4_4g20250
malus_domestica MD13G1150800.v1.1 MD16G1151300.v1.1
prunus_persica Prupe.1G115000_v2.0.a1
pyrus_communis pycom13g12960 pycom16g12930
rosa_chinensis RchiOBHm_Chr4g0425791
rosa_multiflora Rmu_sc0002094.1_g000001 Rmu_sc0010899.1_g000002
rosa_roxburghii Rroxscaffold_5G00367780
rosa_rugosa Rorug04G0206200
rosa_samantha Rh4AG263400 Rh4BG269300
rosa_wichuraiana Rw4G022730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 2 cut(s) 134, 324
AfaI GTAC 2 cut(s) 268, 518
AgsI TTSAA 2 cut(s) 170, 182
AjnI CCWGG 2 cut(s) 58, 495
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
AluBI AGCT 6 cut(s) 65, 185, 257, 323, 365, 554
AluI AGCT 6 cut(s) 65, 185, 257, 323, 365, 554
Alw21I GWGCWC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 510
ApoI RAATTY 1 cut(s) 418
Asp700I GAANNNNTTC 2 cut(s) 147, 450
AspLEI GCGC 1 cut(s) 540
AsuHPI GGTGA 2 cut(s) 88, 284
AsuNHI GCTAGC 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 510
BanII GRGCYC 1 cut(s) 67
BauI CACGAG 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 60, 497
BciVI GTATCC 1 cut(s) 328
BfaI CTAG 1 cut(s) 324
BfmI CTRYAG 1 cut(s) 464
BfuI GTATCC 1 cut(s) 328
BglII AGATCT 1 cut(s) 297
Bme1390I CCNGG 2 cut(s) 60, 497
BmeT110I CYCGRG 1 cut(s) 510
BmrFI CCNGG 2 cut(s) 60, 497
BmrI ACTGGG 1 cut(s) 532
BmtI GCTAGC 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 532
BpmI CTGGAG 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 495
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bse118I RCCGGY 1 cut(s) 104
Bse1I ACTGG 3 cut(s) 274, 438, 527
BseBI CCWGG 2 cut(s) 60, 497
BseDI CCNNGG 1 cut(s) 495
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 3 cut(s) 274, 438, 527
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 104
BsiHKAI GWGCWC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 539
BsmFI GGGAC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 3 cut(s) 297, 460, 478
BspCNI CTCAG 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 327
BsrFI RCCGGY 1 cut(s) 104
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 3 cut(s) 274, 438, 527
BssAI RCCGGY 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 3 cut(s) 297, 460, 478
BssSI CACGAG 1 cut(s) 318
Bst2BI CACGAG 1 cut(s) 318
Bst2UI CCWGG 2 cut(s) 60, 497
Bst4CI ACNGT 2 cut(s) 116, 468
Bst6I CTCTTC 2 cut(s) 43, 387
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 2 cut(s) 255, 325
BstDEI CTNAG 4 cut(s) 66, 232, 258, 567
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 3 cut(s) 300, 463, 481
BstMBI GATC 3 cut(s) 297, 460, 478
BstNI CCWGG 2 cut(s) 60, 497
BstSCI CCNGG 2 cut(s) 58, 495
BstSFI CTRYAG 1 cut(s) 464
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
BsuI GTATCC 1 cut(s) 328
Cac8I GCNNGC 2 cut(s) 255, 325
CfoI GCGC 1 cut(s) 540
Cfr10I RCCGGY 1 cut(s) 104
Csp6I GTAC 2 cut(s) 267, 517
CviAII CATG 1 cut(s) 373
CviQI GTAC 2 cut(s) 267, 517
DdeI CTNAG 4 cut(s) 66, 232, 258, 567
DpnI GATC 3 cut(s) 299, 462, 480
DpnII GATC 3 cut(s) 297, 460, 478
Eam1104I CTCTTC 2 cut(s) 43, 387
EarI CTCTTC 2 cut(s) 43, 387
Ecl136II GAGCTC 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 134, 324
Eco88I CYCGRG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 58, 495
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 1 cut(s) 376
FaiI YATR 4 cut(s) 313, 349, 355, 374
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 438, 470
FaqI GGGAC 1 cut(s) 539
FatI CATG 1 cut(s) 372
FriOI GRGCYC 1 cut(s) 67
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 539
GsaI CCCAGC 1 cut(s) 362
GsuI CTGGAG 1 cut(s) 81
HapII CCGG 1 cut(s) 105
HhaI GCGC 1 cut(s) 540
Hin1II CATG 1 cut(s) 376
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HindIII AAGCTT 1 cut(s) 552
HinfI GANTC 4 cut(s) 211, 341, 543, 572
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 88, 284
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 2 cut(s) 304, 548
Hpy188III TCNNGA 4 cut(s) 215, 318, 472, 576
Hpy8I GTNNAC 1 cut(s) 517
Hpy99I CGWCG 6 cut(s) 13, 16, 19, 22, 25, 28
HpyAV CCTTC 4 cut(s) 256, 299, 416, 570
HpyCH4III ACNGT 2 cut(s) 116, 468
HpyCH4IV ACGT 3 cut(s) 8, 248, 528
HpyCH4V TGCA 2 cut(s) 85, 253
HpyF3I CTNAG 4 cut(s) 66, 232, 258, 567
HpySE526I ACGT 3 cut(s) 8, 248, 528
Hsp92II CATG 1 cut(s) 376
HspAI GCGC 1 cut(s) 538
Kzo9I GATC 3 cut(s) 297, 460, 478
LmnI GCTCC 2 cut(s) 62, 362
MaeI CTAG 1 cut(s) 324
MaeII ACGT 3 cut(s) 8, 248, 528
MaeIII GTNAC 4 cut(s) 37, 116, 484, 499
MalI GATC 3 cut(s) 299, 462, 480
MboI GATC 3 cut(s) 297, 460, 478
MboII GAAGA 4 cut(s) 60, 89, 404, 443
MfeI CAATTG 1 cut(s) 504
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 3 cut(s) 418, 489, 504
MlyI GAGTC 2 cut(s) 537, 566
MmeI TCCRAC 2 cut(s) 357, 571
MnlI CCTC 6 cut(s) 25, 44, 137, 268, 325, 388
MroXI GAANNNNTTC 2 cut(s) 147, 450
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 2 cut(s) 60, 497
MunI CAATTG 1 cut(s) 504
MvaI CCWGG 2 cut(s) 60, 497
NdeII GATC 3 cut(s) 297, 460, 478
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 1 cut(s) 376
PcsI WCGNNNNNNNCGW 3 cut(s) 14, 17, 20
PdmI GAANNNNTTC 2 cut(s) 147, 450
PfeI GAWTC 2 cut(s) 211, 341
PleI GAGTC 2 cut(s) 537, 566
PpsI GAGTC 2 cut(s) 537, 566
Psp124BI GAGCTC 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 58, 495
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 2 cut(s) 58, 495
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 2 cut(s) 268, 518
RsaNI GTAC 2 cut(s) 267, 517
SacI GAGCTC 1 cut(s) 67
Sau3AI GATC 3 cut(s) 297, 460, 478
SchI GAGTC 2 cut(s) 537, 566
ScrFI CCNGG 2 cut(s) 60, 497
SduI GDGCHC 1 cut(s) 67
SfcI CTRYAG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 3 cut(s) 418, 489, 504
SspMI CTAG 1 cut(s) 324
SstI GAGCTC 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 58, 495
TaaI ACNGT 2 cut(s) 116, 468
TaiI ACGT 3 cut(s) 11, 251, 531
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 418, 489, 504
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 2 cut(s) 211, 341
TspDTI ATGAA 2 cut(s) 188, 521
XapI RAATTY 1 cut(s) 418
XmnI GAANNNNTTC 2 cut(s) 147, 450
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.