Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0015096

Physical Location & Seq

Genomic Coordinates Reverse (-)

9154100 .. 9156860

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g12930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTACGGCATCGCCATCATCGTCGTCGTCGGCGGTGACGGAGCGGAGAGGAATACCAGGAGCTCAGTTCGTAGAGGACGTGCAGACCTATCTCACTCAGTTAGGCCTCGACGTTAACTCTGCCCTTGCCTTTCTCCAAGAAAGACTTCAGCAATACAAATTGGTTGAAATGAAGCTTCAAGCTCAGCAGAGAGATCTTCAGGCAAAGATTCCTGATATTGAGAAGTGCTTAGATGTTGTTGCTACTTTGCAAGCTAAGAAGGGTACTGGTGAGGAACTTATTACAGATTTTGAGGTATCTGAAGGGATATATTCACGAGCTAGCATTGACGATACCGATTCAGTCTGTTTATGGCTGGGTGCGAACGTCATGTTGGAGTATTCTTGTGAAGAGGCTACTGCTCTTCTACGAAAGAACTTAGACAATGCTAGAGCCAGTTTAGAAGTTCTGCTTGCTGATCTACAATTCTTGAGAGATCAAGTGACAATAACCCAGGTAACAATTGCTCGGGTGTACAACTGGGATGTTTATCAGCGCAGGATTCGACAAGCTTCCCCCAAGGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0007017 GO:0007021 GO:0008092 GO:0008150 GO:0009987 GO:0015631 GO:0016043 GO:0016272 GO:0022607 GO:0032991 GO:0034622 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0065003 GO:0071840 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

191

Amino Acids

21.24

Weight (kDa)

4.73

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015096)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49510 AT5G49510
fragaria_vesca	FvH4_4g20250
malus_domestica	MD13G1150800.v1.1 MD16G1151300.v1.1
prunus_persica	Prupe.1G115000_v2.0.a1
pyrus_communis	pycom13g12960 pycom16g12930
rosa_chinensis	RchiOBHm_Chr4g0425791
rosa_multiflora	Rmu_sc0002094.1_g000001 Rmu_sc0010899.1_g000002
rosa_roxburghii	Rroxscaffold_5G00367780
rosa_rugosa	Rorug04G0206200
rosa_samantha	Rh4AG263400 Rh4BG269300
rosa_wichuraiana	Rw4G022730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	46
AciI	CCGC	2 cut(s)	35, 46
AcuI	CTGAAG	3 cut(s)	134, 185, 324
AfaI	GTAC	2 cut(s)	268, 518
AgsI	TTSAA	2 cut(s)	170, 182
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	2 cut(s)	58, 495
AjuI	GAANNNNNNNTTGG	4 cut(s)	132, 164, 359, 391
AluBI	AGCT	6 cut(s)	65, 178, 185, 257, 323, 554
AluI	AGCT	6 cut(s)	65, 178, 185, 257, 323, 554
Alw21I	GWGCWC	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	147
AspLEI	GCGC	1 cut(s)	540
AsuHPI	GGTGA	2 cut(s)	49, 284
AsuNHI	GCTAGC	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	67
BauI	CACGAG	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	67
BccI	CCATC	1 cut(s)	25
BceAI	ACGGC	1 cut(s)	24
BciT130I	CCWGG	2 cut(s)	60, 497
BfaI	CTAG	2 cut(s)	324, 432
BglII	AGATCT	1 cut(s)	196
BlpI	GCTNAGC	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	60, 497
BmeT110I	CYCGRG	1 cut(s)	510
BmgBI	CACGTC	1 cut(s)	82
BmrFI	CCNGG	2 cut(s)	60, 497
BmrI	ACTGGG	1 cut(s)	532
BmsI	GCATC	1 cut(s)	20
BmtI	GCTAGC	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	532
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	493
BsaBI	GATNNNNATC	1 cut(s)	531
BsaJI	CCNNGG	2 cut(s)	495, 561
Bse1I	ACTGG	3 cut(s)	274, 438, 527
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	60, 497
BseDI	CCNNGG	2 cut(s)	495, 561
BseGI	GGATG	1 cut(s)	532
BseJI	GATNNNNATC	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	80, 113, 200
BseNI	ACTGG	3 cut(s)	274, 438, 527
BseYI	CCCAGC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	510
BsnI	GGCC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	3 cut(s)	196, 460, 478
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	35, 46
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	3 cut(s)	79, 112, 199
BspHI	TCATGA	1 cut(s)	569
BspOI	GCTAGC	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	411
BsrBI	CCGCTC	1 cut(s)	46
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	274, 438, 527
BssECI	CCNNGG	2 cut(s)	495, 561
BssMI	GATC	3 cut(s)	196, 460, 478
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	561
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	2 cut(s)	60, 497
Bst6I	CTCTTC	2 cut(s)	387, 411
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	3 cut(s)	255, 325, 456
BstDEI	CTNAG	6 cut(s)	66, 99, 186, 232, 258, 421
BstF5I	GGATG	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	3 cut(s)	199, 463, 481
BstMBI	GATC	3 cut(s)	196, 460, 478
BstNI	CCWGG	2 cut(s)	60, 497
BstSCI	CCNGG	2 cut(s)	58, 495
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	108
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	532
Cac8I	GCNNGC	3 cut(s)	255, 325, 456
CciI	TCATGA	1 cut(s)	569
CfoI	GCGC	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	267, 517
CviAII	CATG	2 cut(s)	373, 570
CviQI	GTAC	2 cut(s)	267, 517
DdeI	CTNAG	6 cut(s)	66, 99, 186, 232, 258, 421
DpnI	GATC	3 cut(s)	198, 462, 480
DpnII	GATC	3 cut(s)	196, 460, 478
Eam1104I	CTCTTC	2 cut(s)	387, 411
EarI	CTCTTC	2 cut(s)	387, 411
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	561
Eco147I	AGGCCT	1 cut(s)	108
Eco24I	GRGCYC	1 cut(s)	67
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	3 cut(s)	134, 185, 324
Eco88I	CYCGRG	1 cut(s)	510
EcoICRI	GAGCTC	1 cut(s)	65
EcoRII	CCWGG	2 cut(s)	58, 495
EcoT14I	CCWWGG	1 cut(s)	561
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	2 cut(s)	376, 573
FaiI	YATR	4 cut(s)	313, 355, 374, 571
FalI	AAGNNNNNCTT	4 cut(s)	132, 164, 438, 470
FatI	CATG	2 cut(s)	372, 569
FokI	GGATG	1 cut(s)	539
FriOI	GRGCYC	1 cut(s)	67
FspBI	CTAG	2 cut(s)	324, 432
GlaI	GCGC	1 cut(s)	539
GsaI	CCCAGC	1 cut(s)	362
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	2 cut(s)	376, 573
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	2 cut(s)	176, 552
HinfI	GANTC	4 cut(s)	211, 341, 544, 566
HpaI	GTTAAC	1 cut(s)	118
HphI	GGTGA	2 cut(s)	49, 284
Hpy166II	GTNNAC	2 cut(s)	118, 517
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	4 cut(s)	215, 318, 472, 570
Hpy8I	GTNNAC	2 cut(s)	118, 517
Hpy99I	CGWCG	4 cut(s)	28, 31, 34, 116
HpyAV	CCTTC	2 cut(s)	256, 299
HpyCH4IV	ACGT	3 cut(s)	81, 114, 369
HpyCH4V	TGCA	2 cut(s)	85, 253
HpyF3I	CTNAG	6 cut(s)	66, 99, 186, 232, 258, 421
HpySE526I	ACGT	3 cut(s)	81, 114, 369
Hsp92II	CATG	2 cut(s)	376, 573
HspAI	GCGC	1 cut(s)	538
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	3 cut(s)	196, 460, 478
LguI	GCTCTTC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	43, 62
LweI	GCATC	1 cut(s)	20
MaeI	CTAG	2 cut(s)	324, 432
MaeII	ACGT	3 cut(s)	81, 114, 369
MaeIII	GTNAC	3 cut(s)	37, 484, 499
MalI	GATC	3 cut(s)	198, 462, 480
MbiI	CCGCTC	1 cut(s)	46
MboI	GATC	3 cut(s)	196, 460, 478
MboII	GAAGA	3 cut(s)	191, 398, 404
MfeI	CAATTG	1 cut(s)	504
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	3 cut(s)	161, 467, 504
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	6 cut(s)	44, 70, 119, 268, 289, 388
MroXI	GAANNNNTTC	1 cut(s)	147
MseI	TTAA	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	60, 497
MunI	CAATTG	1 cut(s)	504
MvaI	CCWGG	2 cut(s)	60, 497
NdeII	GATC	3 cut(s)	196, 460, 478
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	2 cut(s)	376, 573
NmuCI	GTSAC	2 cut(s)	37, 484
PagI	TCATGA	1 cut(s)	569
PceI	AGGCCT	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 78
PdmI	GAANNNNTTC	1 cut(s)	147
PfeI	GAWTC	4 cut(s)	211, 341, 544, 566
Psp124BI	GAGCTC	1 cut(s)	67
Psp6I	CCWGG	2 cut(s)	58, 495
PspFI	CCCAGC	1 cut(s)	358
PspGI	CCWGG	2 cut(s)	58, 495
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	2 cut(s)	268, 518
RsaNI	GTAC	2 cut(s)	267, 517
SacI	GAGCTC	1 cut(s)	67
SapI	GCTCTTC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	196, 460, 478
ScrFI	CCNGG	2 cut(s)	60, 497
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
Sse9I	AATT	3 cut(s)	161, 467, 504
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	2 cut(s)	35, 46
SspMI	CTAG	2 cut(s)	324, 432
SstI	GAGCTC	1 cut(s)	67
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	58, 495
StyI	CCWWGG	1 cut(s)	561
TaiI	ACGT	3 cut(s)	84, 117, 372
TaqI	TCGA	2 cut(s)	111, 547
TasI	AATT	3 cut(s)	161, 467, 504
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	4 cut(s)	211, 341, 544, 566
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TseFI	GTSAC	2 cut(s)	37, 484
Tsp45I	GTSAC	2 cut(s)	37, 484
TspDTI	ATGAA	2 cut(s)	188, 558
TspGWI	ACGGA	1 cut(s)	56
XmnI	GAANNNNTTC	1 cut(s)	147
XspI	CTAG	2 cut(s)	324, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.