Prupe.1G115000_v2.0.a1

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015096
Physical Location & Seq
Reverse (-)
9102252 .. 9105554
3303 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G115000.1

Sequence Viewer

Length: 573 bp
ATGGCTACGGCATCATCATCGTCGTCGTCTGGGATGGTAACAGAGCGGAGAGGAATACCAGGAGCTCAGTTCGTAGAGGACGTGCAGACCTATCTCACTCAGGCAGGCCTCGACGTTAACTCTGCCCTTTCCTTTCTCCAAGAAAGACTTCAGCAATACAAATTGGTTGAAATGAAGCTTCAAGCTCAACAAAGGGATCTACAGGCAAAGATCCCCGATATTGAGAAGTGCTTAGATGTTGTTGCTACTTTGCAAGCTAAGAAGGGTACCGGTGAGGCACTTATTACAGATTTTGAGGTATCTGAAGGGATATATTCGCGAGCTAGCATTGAGGATACTGATTCAGTGTGTTTATGGCTGGGAGCGAACGTCATGTTGGAGTATTCTTGTGAAGAGGCTACTGGTCTTCTACGAAGAAATCTAGATAATGCTAAAGCCAGTTTAGAAGTTCTTCTTGCTGATCTGCAGTTCTTGAGGGATCAAGTGACAATAACCCAGGTAACTATTGCTCGGGTGTACAACTGGGATGTTCATCAGCGCAGACTTCGACAAGCTTCCCCTAAGGACTCATGA

Protein Analysis

191

Amino Acids

21.15

Weight (kDa)

4.9

Isoelectric Point (pI)

50.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015096)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49510 AT5G49510
fragaria_vesca FvH4_4g20250
malus_domestica MD13G1150800.v1.1 MD16G1151300.v1.1
prunus_persica Prupe.1G115000_v2.0.a1
pyrus_communis pycom13g12960 pycom16g12930
rosa_chinensis RchiOBHm_Chr4g0425791
rosa_multiflora Rmu_sc0002094.1_g000001 Rmu_sc0010899.1_g000002
rosa_roxburghii Rroxscaffold_5G00367780
rosa_rugosa Rorug04G0206200
rosa_samantha Rh4AG263400 Rh4BG269300
rosa_wichuraiana Rw4G022730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 46
AccII CGCG 1 cut(s) 319
AciI CCGC 1 cut(s) 46
AclWI GGATC 3 cut(s) 204, 205, 486
AcuI CTGAAG 2 cut(s) 134, 324
AfaI GTAC 2 cut(s) 268, 518
AgeI ACCGGT 1 cut(s) 269
AgsI TTSAA 2 cut(s) 170, 182
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 2 cut(s) 58, 495
AjuI GAANNNNNNNTTGG 4 cut(s) 132, 164, 359, 391
AluBI AGCT 6 cut(s) 65, 178, 185, 257, 323, 554
AluI AGCT 6 cut(s) 65, 178, 185, 257, 323, 554
Alw21I GWGCWC 1 cut(s) 67
AlwI GGATC 3 cut(s) 204, 205, 486
Ama87I CYCGRG 1 cut(s) 510
AoxI GGCC 1 cut(s) 106
AsiGI ACCGGT 1 cut(s) 269
Asp700I GAANNNNTTC 2 cut(s) 147, 450
Asp718I GGTACC 1 cut(s) 266
AspLEI GCGC 1 cut(s) 540
AsuHPI GGTGA 1 cut(s) 284
AsuNHI GCTAGC 1 cut(s) 323
AvaI CYCGRG 1 cut(s) 510
AxyI CCTNAGG 1 cut(s) 561
BanI GGYRCC 1 cut(s) 266
BanII GRGCYC 1 cut(s) 67
BbsI GAAGAC 1 cut(s) 398
Bbv12I GWGCWC 1 cut(s) 67
BccI CCATC 1 cut(s) 28
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 60, 497
BciVI GTATCC 1 cut(s) 328
BfaI CTAG 2 cut(s) 324, 422
BfmI CTRYAG 2 cut(s) 200, 464
BfuI GTATCC 1 cut(s) 328
Bme1390I CCNGG 2 cut(s) 60, 497
BmeT110I CYCGRG 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 60, 497
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 1 cut(s) 20
BmtI GCTAGC 1 cut(s) 327
BmuI ACTGGG 1 cut(s) 532
BpiI GAAGAC 1 cut(s) 398
BpuEI CTTGAG 1 cut(s) 493
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 495
BsaWI WCCGGW 1 cut(s) 269
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 3 cut(s) 406, 438, 527
Bse21I CCTNAGG 1 cut(s) 561
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 2 cut(s) 60, 497
BseDI CCNNGG 1 cut(s) 495
BseGI GGATG 2 cut(s) 39, 532
BseJI GATNNNNATC 1 cut(s) 531
BseMII CTCAG 2 cut(s) 80, 113
BseNI ACTGG 3 cut(s) 406, 438, 527
BseYI CCCAGC 1 cut(s) 358
BsgI GTGCAG 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 266
BshTI ACCGGT 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 1 cut(s) 270
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 67
Bsp1407I TGTACA 1 cut(s) 516
Bsp143I GATC 4 cut(s) 196, 210, 460, 478
Bsp68I TCGCGA 1 cut(s) 319
BspACI CCGC 1 cut(s) 46
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 79, 112
BspFNI CGCG 1 cut(s) 319
BspHI TCATGA 1 cut(s) 569
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 468
BspOI GCTAGC 1 cut(s) 327
BspPI GGATC 3 cut(s) 204, 205, 486
BspT107I GGYRCC 1 cut(s) 266
BsrBI CCGCTC 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 516
BsrI ACTGG 3 cut(s) 406, 438, 527
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 1 cut(s) 495
BssMI GATC 4 cut(s) 196, 210, 460, 478
Bst2UI CCWGG 2 cut(s) 60, 497
Bst6I CTCTTC 1 cut(s) 387
BstAUI TGTACA 1 cut(s) 516
BstC8I GCNNGC 4 cut(s) 106, 255, 321, 325
BstDEI CTNAG 5 cut(s) 66, 99, 232, 258, 561
BstF5I GGATG 2 cut(s) 39, 532
BstFNI CGCG 1 cut(s) 319
BstHHI GCGC 1 cut(s) 540
BstKTI GATC 4 cut(s) 199, 213, 463, 481
BstMBI GATC 4 cut(s) 196, 210, 460, 478
BstNI CCWGG 2 cut(s) 60, 497
BstSCI CCNGG 2 cut(s) 58, 495
BstSFI CTRYAG 2 cut(s) 200, 464
BstUI CGCG 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 398
BstX2I RGATCY 2 cut(s) 196, 210
BstYI RGATCY 2 cut(s) 196, 210
Bsu36I CCTNAGG 1 cut(s) 561
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 1 cut(s) 108
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 39, 532
BtsIMutI CAGTG 1 cut(s) 351
BtuMI TCGCGA 1 cut(s) 319
Cac8I GCNNGC 4 cut(s) 106, 255, 321, 325
CciI TCATGA 1 cut(s) 569
CfoI GCGC 1 cut(s) 540
Cfr10I RCCGGY 1 cut(s) 269
Csp6I GTAC 2 cut(s) 267, 517
CspAI ACCGGT 1 cut(s) 269
CviAII CATG 2 cut(s) 373, 570
CviQI GTAC 2 cut(s) 267, 517
DdeI CTNAG 5 cut(s) 66, 99, 232, 258, 561
DpnI GATC 4 cut(s) 198, 212, 462, 480
DpnII GATC 4 cut(s) 196, 210, 460, 478
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 65
Eco147I AGGCCT 1 cut(s) 108
Eco24I GRGCYC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 65
Eco57I CTGAAG 2 cut(s) 134, 324
Eco81I CCTNAGG 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 510
EcoICRI GAGCTC 1 cut(s) 65
EcoRII CCWGG 2 cut(s) 58, 495
EcoT38I GRGCYC 1 cut(s) 67
FaeI CATG 2 cut(s) 376, 573
FaiI YATR 4 cut(s) 313, 355, 374, 571
FalI AAGNNNNNCTT 4 cut(s) 132, 164, 438, 470
FatI CATG 2 cut(s) 372, 569
FokI GGATG 2 cut(s) 46, 539
FriOI GRGCYC 1 cut(s) 67
FspBI CTAG 2 cut(s) 324, 422
GlaI GCGC 1 cut(s) 539
GsaI CCCAGC 1 cut(s) 362
HaeIII GGCC 1 cut(s) 108
HapII CCGG 1 cut(s) 270
HhaI GCGC 1 cut(s) 540
Hin1II CATG 2 cut(s) 376, 573
Hin6I GCGC 1 cut(s) 538
HinP1I GCGC 1 cut(s) 538
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 2 cut(s) 176, 552
HinfI GANTC 2 cut(s) 341, 566
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 1 cut(s) 270
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 2 cut(s) 118, 517
Hpy188I TCNGA 1 cut(s) 304
Hpy188III TCNNGA 4 cut(s) 318, 422, 472, 570
Hpy8I GTNNAC 2 cut(s) 118, 517
Hpy99I CGWCG 3 cut(s) 25, 28, 116
HpyAV CCTTC 2 cut(s) 256, 299
HpyCH4IV ACGT 3 cut(s) 81, 114, 369
HpyCH4V TGCA 3 cut(s) 85, 253, 466
HpyF3I CTNAG 5 cut(s) 66, 99, 232, 258, 561
HpySE526I ACGT 3 cut(s) 81, 114, 369
Hsp92II CATG 2 cut(s) 376, 573
HspAI GCGC 1 cut(s) 538
KpnI GGTACC 1 cut(s) 270
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 4 cut(s) 196, 210, 460, 478
LmnI GCTCC 2 cut(s) 62, 362
LweI GCATC 1 cut(s) 20
MaeI CTAG 2 cut(s) 324, 422
MaeII ACGT 3 cut(s) 81, 114, 369
MaeIII GTNAC 3 cut(s) 37, 484, 499
MalI GATC 4 cut(s) 198, 212, 462, 480
MbiI CCGCTC 1 cut(s) 46
MboI GATC 4 cut(s) 196, 210, 460, 478
MboII GAAGA 4 cut(s) 398, 404, 426, 443
MflI RGATCY 2 cut(s) 196, 210
MhlI GDGCHC 1 cut(s) 67
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 560
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 8 cut(s) 44, 70, 119, 268, 289, 325, 388, 468
MroXI GAANNNNTTC 2 cut(s) 147, 450
MseI TTAA 1 cut(s) 117
MspI CCGG 1 cut(s) 270
MspR9I CCNGG 2 cut(s) 60, 497
MvaI CCWGG 2 cut(s) 60, 497
MvnI CGCG 1 cut(s) 319
NdeII GATC 4 cut(s) 196, 210, 460, 478
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 2 cut(s) 376, 573
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 484
NruI TCGCGA 1 cut(s) 319
PagI TCATGA 1 cut(s) 569
PceI AGGCCT 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdmI GAANNNNTTC 2 cut(s) 147, 450
PfeI GAWTC 1 cut(s) 341
PinAI ACCGGT 1 cut(s) 269
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 58, 495
PspFI CCCAGC 1 cut(s) 358
PspGI CCWGG 2 cut(s) 58, 495
PspN4I GGNNCC 1 cut(s) 268
PstI CTGCAG 1 cut(s) 468
PsuI RGATCY 2 cut(s) 196, 210
RruI TCGCGA 1 cut(s) 319
RsaI GTAC 2 cut(s) 268, 518
RsaNI GTAC 2 cut(s) 267, 517
SacI GAGCTC 1 cut(s) 67
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 4 cut(s) 196, 210, 460, 478
SchI GAGTC 1 cut(s) 560
ScrFI CCNGG 2 cut(s) 60, 497
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 1 cut(s) 20
SfcI CTRYAG 2 cut(s) 200, 464
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 1 cut(s) 161
SseBI AGGCCT 1 cut(s) 108
SsiI CCGC 1 cut(s) 46
SspMI CTAG 2 cut(s) 324, 422
SstI GAGCTC 1 cut(s) 67
StuI AGGCCT 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 58, 495
TaiI ACGT 3 cut(s) 84, 117, 372
TaqI TCGA 2 cut(s) 111, 547
TasI AATT 1 cut(s) 161
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 351
TseFI GTSAC 1 cut(s) 484
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 2 cut(s) 188, 521
TspRI CASTG 1 cut(s) 351
XbaI TCTAGA 1 cut(s) 421
XmnI GAANNNNTTC 2 cut(s) 147, 450
XspI CTAG 2 cut(s) 324, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.