AT5G49540

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012102
Physical Location & Seq
Reverse (-)
20104481 .. 20106278
1798 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49540.1

Sequence Viewer

Length: 345 bp
ATGGGTTCATCTGAGAAGAGATCAAAGGATATCATGAGTGACATACCAACTTTCAGTGCAGAGAATTTGCAGAACAATTTGAAAGTCATTCAAAACAGCCGGACGTTTCTGTCTATCATAGCTGGTGTCTTAGCAGGAATAATTGGATTCAATGGCTTGATTGGTTTTGTATTTTACTTTGTGGTGATGTTGATCACATCTGTTGGGCTCATGGCTAAGGCAGGATTCTCAGCTGACTTGTACTTTGATTCGTGGAATCGGGTTCTTTTTGACGGTTTTCTTGGTGGCCTTATGTCGTTTGTGCTGTTCTGGACATTTGCGTATGACTTGGTGCACATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

114

Amino Acids

12.68

Weight (kDa)

5.58

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 29 - 108 6.4e-22 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49540 AT5G49540
fragaria_vesca FvH4_4g20620
malus_domestica MD13G1149300.v1.1 MD16G1149600.v1.1
prunus_persica Prupe.1G113300_v2.0.a1
pyrus_communis pycom13g12850 pycom16g12810
rosa_chinensis RchiOBHm_Chr4g0425981
rosa_laevigata RLG00000007326
rosa_multiflora Rmu_ssc0000281.1_g000021
rosa_roxburghii Rroxscaffold_5G00367990
rosa_rugosa Rorug04G0207800
rosa_samantha Rh4AG264800 Rh4BG270700 Rh4CG283300 Rh4CG283600 Rh4DG267300
rosa_wichuraiana Rw4G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 109
AcsI RAATTY 1 cut(s) 64
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 3 cut(s) 82, 92, 151
AluBI AGCT 2 cut(s) 122, 233
AluI AGCT 2 cut(s) 122, 233
Alw21I GWGCWC 1 cut(s) 336
Alw44I GTGCAC 1 cut(s) 332
AoxI GGCC 1 cut(s) 286
ApaLI GTGCAC 1 cut(s) 332
ApoI RAATTY 1 cut(s) 64
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AsuHPI GGTGA 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 336
BanII GRGCYC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 336
BclI TGATCA 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 191
Bse8I GATNNNNATC 1 cut(s) 191
BseJI GATNNNNATC 1 cut(s) 191
BseMII CTCAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 336
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 336
BsiSI CCGG 1 cut(s) 100
BsnI GGCC 1 cut(s) 288
Bsp1286I GDGCHC 2 cut(s) 210, 336
Bsp143I GATC 2 cut(s) 20, 192
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 2 cut(s) 4, 242
BspHI TCATGA 1 cut(s) 33
BssMI GATC 2 cut(s) 20, 192
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 11
BstDEI CTNAG 4 cut(s) 12, 130, 216, 229
BstKTI GATC 2 cut(s) 23, 195
BstMBI GATC 2 cut(s) 20, 192
BstSLI GKGCMC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 288
BtsIMutI CAGTG 1 cut(s) 61
CciI TCATGA 1 cut(s) 33
Csp6I GTAC 1 cut(s) 241
CviAII CATG 2 cut(s) 34, 211
CviJI RGCY 7 cut(s) 99, 122, 156, 208, 215, 233, 288
CviKI_1 RGCY 7 cut(s) 99, 122, 156, 208, 215, 233, 288
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 4 cut(s) 12, 130, 216, 229
DpnI GATC 2 cut(s) 22, 194
DpnII GATC 2 cut(s) 20, 192
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 210
Eco32I GATATC 1 cut(s) 31
EcoRV GATATC 1 cut(s) 31
EcoT38I GRGCYC 1 cut(s) 210
FaeI CATG 2 cut(s) 37, 214
FaiI YATR 7 cut(s) 35, 44, 119, 212, 293, 324, 338
FatI CATG 2 cut(s) 33, 210
FbaI TGATCA 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 288
HapII CCGG 1 cut(s) 100
Hin1II CATG 2 cut(s) 37, 214
HinfI GANTC 4 cut(s) 147, 225, 248, 256
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 13, 344
Hpy188III TCNNGA 2 cut(s) 34, 310
Hpy8I GTNNAC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 59, 70, 334
HpyF3I CTNAG 4 cut(s) 12, 130, 216, 229
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 2 cut(s) 37, 214
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 2 cut(s) 20, 192
LpnPI CCDG 5 cut(s) 108, 113, 120, 207, 295
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 22, 194
MboI GATC 2 cut(s) 20, 192
MboII GAAGA 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 210, 336
MluCI AATT 3 cut(s) 64, 76, 141
MspA1I CMGCKG 1 cut(s) 233
MspI CCGG 1 cut(s) 100
NdeII GATC 2 cut(s) 20, 192
NlaIII CATG 2 cut(s) 37, 214
NmuCI GTSAC 1 cut(s) 38
PagI TCATGA 1 cut(s) 33
PfeI GAWTC 4 cut(s) 147, 225, 248, 256
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
Sau3AI GATC 2 cut(s) 20, 192
SduI GDGCHC 2 cut(s) 210, 336
SetI ASST 3 cut(s) 107, 124, 235
Sse9I AATT 3 cut(s) 64, 76, 141
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 1 cut(s) 107
TasI AATT 3 cut(s) 64, 76, 141
TatI WGTACW 1 cut(s) 240
TfiI GAWTC 4 cut(s) 147, 225, 248, 256
TscAI CASTG 1 cut(s) 61
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspRI CASTG 1 cut(s) 61
VneI GTGCAC 1 cut(s) 332
XapI RAATTY 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.