MD13G1149300.v1.1

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0012102
Physical Location & Seq
Forward (+)
11729402 .. 11731755
2354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1149300.v1.1.491

Sequence Viewer

Length: 345 bp
ATGGGTGTGTCTGAGAAGAAATCTAGCGAGGCCGCATTTGATGTGCCAACCCTCAACGCTGAGAATTTGCAAAGTAACATGAAAGTTATATATTACAGCCGAACATTCATGTCTATCATCGGTGGTGTCATTGCTGGAATTTTGGGGTTCACTGGCCTCACCGGATTTATTTTTTATTTTCTTATCATGACCGTCACTTCAGTTGGACTCATTGCCAAGACGGGGTTTACAGTTTATTCATATTTTGATAGCTGGAGCCAGATTATACTCGACGGCTTTCTGGGTGGGCTTTTGTCATTCGTGCTGTTCTGGACATTCGCATATGACCTTGTGCATATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

115

Amino Acids

12.63

Weight (kDa)

5.0

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 29 - 108 6.2e-21 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49540 AT5G49540
fragaria_vesca FvH4_4g20620
malus_domestica MD13G1149300.v1.1 MD16G1149600.v1.1
prunus_persica Prupe.1G113300_v2.0.a1
pyrus_communis pycom13g12850 pycom16g12810
rosa_chinensis RchiOBHm_Chr4g0425981
rosa_laevigata RLG00000007326
rosa_multiflora Rmu_ssc0000281.1_g000021
rosa_roxburghii Rroxscaffold_5G00367990
rosa_rugosa Rorug04G0207800
rosa_samantha Rh4AG264800 Rh4BG270700 Rh4CG283300 Rh4CG283600 Rh4DG267300
rosa_wichuraiana Rw4G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 33
AcsI RAATTY 2 cut(s) 64, 138
AcuI CTGAAG 1 cut(s) 183
AfiI CCNNNNNNNGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 252
AluI AGCT 1 cut(s) 252
AoxI GGCC 2 cut(s) 30, 154
ApoI RAATTY 2 cut(s) 64, 138
AsuHPI GGTGA 1 cut(s) 151
BceAI ACGGC 1 cut(s) 289
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 274
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 2 cut(s) 129, 210
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 2 cut(s) 129, 210
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 157
BshFI GGCC 2 cut(s) 32, 156
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 222
BsnI GGCC 2 cut(s) 32, 156
BspACI CCGC 1 cut(s) 33
BspANI GGCC 2 cut(s) 32, 156
BspCNI CTCAG 2 cut(s) 4, 52
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 129, 210
BsrI ACTGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 193, 232
BstDEI CTNAG 2 cut(s) 12, 60
BsuRI GGCC 2 cut(s) 32, 156
BtsIMutI CAGTG 1 cut(s) 150
CciI TCATGA 1 cut(s) 186
CviAII CATG 3 cut(s) 79, 109, 187
CviJI RGCY 7 cut(s) 32, 99, 156, 252, 258, 276, 289
CviKI_1 RGCY 7 cut(s) 32, 99, 156, 252, 258, 276, 289
DdeI CTNAG 2 cut(s) 12, 60
Eco57I CTGAAG 1 cut(s) 183
FaeI CATG 3 cut(s) 82, 112, 190
FatI CATG 3 cut(s) 78, 108, 186
FauNDI CATATG 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 33
GsuI CTGGAG 1 cut(s) 274
HaeIII GGCC 2 cut(s) 32, 156
HapII CCGG 1 cut(s) 162
Hin1II CATG 3 cut(s) 82, 112, 190
HinfI GANTC 1 cut(s) 207
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 150, 228
Hpy188I TCNGA 2 cut(s) 13, 344
Hpy188III TCNNGA 2 cut(s) 187, 310
Hpy8I GTNNAC 2 cut(s) 150, 228
Hpy99I CGWCG 1 cut(s) 275
HpyCH4III ACNGT 2 cut(s) 193, 232
HpyCH4V TGCA 2 cut(s) 70, 334
HpyF3I CTNAG 2 cut(s) 12, 60
Hsp92II CATG 3 cut(s) 82, 112, 190
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 7 cut(s) 120, 138, 175, 238, 266, 272, 295
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 74, 193
MboII GAAGA 1 cut(s) 28
MluCI AATT 2 cut(s) 64, 138
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 22, 62, 167
MspI CCGG 1 cut(s) 162
NdeI CATATG 1 cut(s) 322
NlaIII CATG 3 cut(s) 82, 112, 190
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 193
PagI TCATGA 1 cut(s) 186
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 257
SatI GCNGC 1 cut(s) 33
SchI GAGTC 1 cut(s) 201
SetI ASST 2 cut(s) 254, 330
Sse9I AATT 2 cut(s) 64, 138
SsiI CCGC 1 cut(s) 33
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 193, 232
TaqI TCGA 1 cut(s) 270
TasI AATT 2 cut(s) 64, 138
TauI GCSGC 1 cut(s) 35
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 95, 97, 228
TspRI CASTG 1 cut(s) 157
XapI RAATTY 2 cut(s) 64, 138
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.