pycom16g12810

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0012102
Physical Location & Seq
Forward (+)
9059990 .. 9060702
713 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g12810.2

Sequence Viewer

Length: 345 bp
ATGGGTGCATCTGAGAAGAAATCTAGCGAGGCCGCATTTGATGTGCCAACCCTCAACGCTGAAAATTTGCAAAGCAACATGAAAGTTATATATTACAGCCGAACATTTATGTCTATCATCGGTGGGATCATTGCTGGAATTTTGGGATTCACTGGCCTTACCGGATTTATTTGGTATTTTCTTATCATGACCGTCACCTCGGTCGGACTCATTGCCAAGACAGGGTTTGCAGTTGATTCATATTTTGATAGCTGGACCCAGATTATACTAGATGGCTTTCTGGGCGGGCTTTTATCATTCGTGTTGTTCTGGACATTTGCATATGACATTGTACACATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

115

Amino Acids

12.59

Weight (kDa)

4.7

Isoelectric Point (pI)

36.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49540 AT5G49540
fragaria_vesca FvH4_4g20620
malus_domestica MD13G1149300.v1.1 MD16G1149600.v1.1
prunus_persica Prupe.1G113300_v2.0.a1
pyrus_communis pycom13g12850 pycom16g12810
rosa_chinensis RchiOBHm_Chr4g0425981
rosa_laevigata RLG00000007326
rosa_multiflora Rmu_ssc0000281.1_g000021
rosa_roxburghii Rroxscaffold_5G00367990
rosa_rugosa Rorug04G0207800
rosa_samantha Rh4AG264800 Rh4BG270700 Rh4CG283300 Rh4CG283600 Rh4DG267300
rosa_wichuraiana Rw4G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 33, 285
AclWI GGATC 1 cut(s) 134
AcsI RAATTY 2 cut(s) 64, 138
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 252
AluI AGCT 1 cut(s) 252
AlwI GGATC 1 cut(s) 134
AoxI GGCC 2 cut(s) 30, 154
ApoI RAATTY 2 cut(s) 64, 138
AspS9I GGNCC 1 cut(s) 255
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 255
BccI CCATC 1 cut(s) 266
BfaI CTAG 2 cut(s) 24, 269
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 255
BmiI GGNNCC 1 cut(s) 257
BmsI GCATC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 198
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 2 cut(s) 129, 210
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 2 cut(s) 129, 210
BseNI ACTGG 1 cut(s) 157
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 2 cut(s) 32, 156
BsiEI CGRYCG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 222
BsnI GGCC 2 cut(s) 32, 156
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 2 cut(s) 33, 285
BspANI GGCC 2 cut(s) 32, 156
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 1 cut(s) 134
BsrDI GCAATG 2 cut(s) 129, 210
BsrGI TGTACA 1 cut(s) 331
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 193
BstAUI TGTACA 1 cut(s) 331
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 12
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 1 cut(s) 282
BsuRI GGCC 2 cut(s) 32, 156
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 287
CciI TCATGA 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 255
Csp6I GTAC 1 cut(s) 332
CviAII CATG 2 cut(s) 79, 187
CviJI RGCY 6 cut(s) 32, 99, 156, 252, 276, 289
CviKI_1 RGCY 6 cut(s) 32, 99, 156, 252, 276, 289
CviQI GTAC 1 cut(s) 332
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 255
FaeI CATG 2 cut(s) 82, 190
FatI CATG 2 cut(s) 78, 186
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 2 cut(s) 24, 269
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 2 cut(s) 32, 156
HapII CCGG 1 cut(s) 162
Hin1II CATG 2 cut(s) 82, 190
HinfI GANTC 3 cut(s) 147, 207, 236
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 3 cut(s) 13, 206, 344
Hpy188III TCNNGA 2 cut(s) 187, 310
Hpy8I GTNNAC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 4 cut(s) 8, 70, 230, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 2 cut(s) 82, 190
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 8 cut(s) 120, 138, 175, 207, 238, 266, 272, 295
LweI GCATC 1 cut(s) 17
MaeI CTAG 2 cut(s) 24, 269
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 1 cut(s) 28
MluCI AATT 2 cut(s) 64, 138
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 22, 62, 208
MspI CCGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 282
NdeI CATATG 1 cut(s) 322
NdeII GATC 1 cut(s) 126
NlaIII CATG 2 cut(s) 82, 190
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 193
PagI TCATGA 1 cut(s) 186
PfeI GAWTC 2 cut(s) 147, 236
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 1 cut(s) 255
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
SatI GCNGC 1 cut(s) 33
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 255
SchI GAGTC 1 cut(s) 201
SetI ASST 2 cut(s) 200, 254
SfaNI GCATC 1 cut(s) 17
SinI GGWCC 1 cut(s) 255
Sse9I AATT 2 cut(s) 64, 138
SsiI CCGC 2 cut(s) 33, 285
SspMI CTAG 2 cut(s) 24, 269
TaaI ACNGT 1 cut(s) 193
TaqII GACCGA 1 cut(s) 190
TasI AATT 2 cut(s) 64, 138
TatI WGTACW 1 cut(s) 331
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 147, 236
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 95, 228
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 255
XapI RAATTY 2 cut(s) 64, 138
XspI CTAG 2 cut(s) 24, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.