MD16G1149600.v1.1

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012102
Physical Location & Seq
Forward (+)
11797586 .. 11799838
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1149600.v1.1.491

Sequence Viewer

Length: 345 bp
ATGGGTGCGTCTGAGAAGAAATCTAGCGAGGCCGCATTTGATGTGCCAACCCTCAACGCTGAAAATTTACAAAGCAACATGAAAATTATATATTACAGCCGAACATTTATGTCTATCATCGGTGGGGTCATTGCTGGAATTTTGGGATTCACTGGCCTTACTGGATTTATTTGGTATTTTCTTATCATGACCGTCACCTCGGTTGGACTCATTGCCAAGACAGGGTTTGCAGTTTATTCATATTTTGATAGCTGGAACCAGATTATACTTGATGGCTTTCTGGGCGGGCTTTTGTCATTCGTGTTGTTCTGGACATTTGCATATGACATTGTGCACATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

115

Amino Acids

12.65

Weight (kDa)

5.0

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 30 - 108 1.2e-19 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49540 AT5G49540
fragaria_vesca FvH4_4g20620
malus_domestica MD13G1149300.v1.1 MD16G1149600.v1.1
prunus_persica Prupe.1G113300_v2.0.a1
pyrus_communis pycom13g12850 pycom16g12810
rosa_chinensis RchiOBHm_Chr4g0425981
rosa_laevigata RLG00000007326
rosa_multiflora Rmu_ssc0000281.1_g000021
rosa_roxburghii Rroxscaffold_5G00367990
rosa_rugosa Rorug04G0207800
rosa_samantha Rh4AG264800 Rh4BG270700 Rh4CG283300 Rh4CG283600 Rh4DG267300
rosa_wichuraiana Rw4G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 33, 285
AcsI RAATTY 2 cut(s) 64, 138
AfiI CCNNNNNNNGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 252
AluI AGCT 1 cut(s) 252
Alw21I GWGCWC 1 cut(s) 336
Alw44I GTGCAC 1 cut(s) 332
AoxI GGCC 2 cut(s) 30, 154
ApaLI GTGCAC 1 cut(s) 332
ApoI RAATTY 2 cut(s) 64, 138
AsuHPI GGTGA 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 336
BccI CCATC 1 cut(s) 266
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 157, 166
Bse3DI GCAATG 2 cut(s) 129, 210
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMI GCAATG 2 cut(s) 129, 210
BseNI ACTGG 2 cut(s) 157, 166
BseSI GKGCMC 1 cut(s) 336
BshFI GGCC 2 cut(s) 32, 156
BsiHKAI GWGCWC 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 222
BsnI GGCC 2 cut(s) 32, 156
Bsp1286I GDGCHC 1 cut(s) 336
BspACI CCGC 2 cut(s) 33, 285
BspANI GGCC 2 cut(s) 32, 156
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 129, 210
BsrI ACTGG 2 cut(s) 157, 166
BssECI CCNNGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 193
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 336
BsuRI GGCC 2 cut(s) 32, 156
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 287
CciI TCATGA 1 cut(s) 186
CviAII CATG 2 cut(s) 79, 187
CviJI RGCY 6 cut(s) 32, 99, 156, 252, 276, 289
CviKI_1 RGCY 6 cut(s) 32, 99, 156, 252, 276, 289
DdeI CTNAG 1 cut(s) 12
FaeI CATG 2 cut(s) 82, 190
FatI CATG 2 cut(s) 78, 186
FauI CCCGC 1 cut(s) 278
FauNDI CATATG 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 33
Fsp4HI GCNGC 1 cut(s) 33
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 33
HaeIII GGCC 2 cut(s) 32, 156
Hin1II CATG 2 cut(s) 82, 190
HinfI GANTC 2 cut(s) 147, 207
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 2 cut(s) 13, 344
Hpy188III TCNNGA 2 cut(s) 187, 310
Hpy8I GTNNAC 1 cut(s) 334
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 230, 320, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 2 cut(s) 82, 190
LpnPI CCDG 8 cut(s) 120, 138, 147, 207, 238, 266, 272, 295
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 193
MboII GAAGA 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 3 cut(s) 64, 84, 138
MlyI GAGTC 1 cut(s) 201
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 3 cut(s) 22, 62, 208
MwoI GCNNNNNNNGC 1 cut(s) 282
NdeI CATATG 1 cut(s) 322
NlaIII CATG 2 cut(s) 82, 190
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 193
PagI TCATGA 1 cut(s) 186
PfeI GAWTC 1 cut(s) 147
PkrI GCNGC 1 cut(s) 34
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 257
SatI GCNGC 1 cut(s) 33
SchI GAGTC 1 cut(s) 201
SduI GDGCHC 1 cut(s) 336
SetI ASST 2 cut(s) 200, 254
Sse9I AATT 3 cut(s) 64, 84, 138
SsiI CCGC 2 cut(s) 33, 285
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 193
TasI AATT 3 cut(s) 64, 84, 138
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 147
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 95, 228
TspRI CASTG 1 cut(s) 157
VneI GTGCAC 1 cut(s) 332
XapI RAATTY 2 cut(s) 64, 138
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.