FvH4_4g20620

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0012102
Physical Location & Seq
Reverse (-)
23772112 .. 23774237
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20620.t1

Sequence Viewer

Length: 363 bp
ATGGCTGGACACAATGAGTCAAGTGCATCTGGGAAGAATTTGGGCGAGGCCTCAAATGATGTACCAACCAGAAATGCTGAGAGTTTGCAAAGTAACATGAAGATTGTCTACTACAGCCGAACATTTATGTCTATCATCAGCGGGGTCATTGCTGGAATTCTAGGGTTCACTGGCCTTTCTGGATTTATTTTGTATTTCCTTATTATGGCCATTACTTCGGTTGGACTGATTGCCAAGGCAGGATTTCAAGTTCATTCGTATTTTGACAGCTGGAACCAGATTATACTTGACGGCTTCCTGGGTGGGCTTTTGTCATTTGTGCTGTTCTGGACGTTTTCTTATGACATTGTGCATATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

121

Amino Acids

13.12

Weight (kDa)

5.78

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EMC6 PF07019 36 - 114 3.1e-22 EMC6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49540 AT5G49540
fragaria_vesca FvH4_4g20620
malus_domestica MD13G1149300.v1.1 MD16G1149600.v1.1
prunus_persica Prupe.1G113300_v2.0.a1
pyrus_communis pycom13g12850 pycom16g12810
rosa_chinensis RchiOBHm_Chr4g0425981
rosa_laevigata RLG00000007326
rosa_multiflora Rmu_ssc0000281.1_g000021
rosa_roxburghii Rroxscaffold_5G00367990
rosa_rugosa Rorug04G0207800
rosa_samantha Rh4AG264800 Rh4BG270700 Rh4CG283300 Rh4CG283600 Rh4DG267300
rosa_wichuraiana Rw4G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 108
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 2 cut(s) 37, 156
AfaI GTAC 1 cut(s) 63
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 1 cut(s) 248
AjnI CCWGG 1 cut(s) 297
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
AoxI GGCC 3 cut(s) 48, 172, 207
ApoI RAATTY 2 cut(s) 37, 156
BalI TGGCCA 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
BceAI ACGGC 1 cut(s) 307
BciT130I CCWGG 1 cut(s) 299
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 299
BmiI GGNNCC 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 234, 298
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 234, 298
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 147
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 175
BshFI GGCC 3 cut(s) 50, 174, 209
BslI CCNNNNNNNGG 1 cut(s) 205
BsnI GGCC 3 cut(s) 50, 174, 209
BspACI CCGC 1 cut(s) 141
BspANI GGCC 3 cut(s) 50, 174, 209
BspCNI CTCAG 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 275
BsrDI GCAATG 1 cut(s) 147
BsrI ACTGG 1 cut(s) 175
BssECI CCNNGG 2 cut(s) 234, 298
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 299
BstDEI CTNAG 1 cut(s) 78
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 1 cut(s) 297
BstSFI CTRYAG 1 cut(s) 112
BsuRI GGCC 3 cut(s) 50, 174, 209
BtsIMutI CAGTG 1 cut(s) 168
Csp6I GTAC 1 cut(s) 62
CviAII CATG 1 cut(s) 97
CviJI RGCY 8 cut(s) 5, 50, 117, 174, 209, 270, 294, 307
CviKI_1 RGCY 8 cut(s) 5, 50, 117, 174, 209, 270, 294, 307
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 78
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 234
Eco147I AGGCCT 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 100
FaiI YATR 7 cut(s) 98, 128, 206, 284, 342, 354, 356
FatI CATG 1 cut(s) 96
FauI CCCGC 1 cut(s) 134
FblI GTMKAC 1 cut(s) 108
FspBI CTAG 1 cut(s) 161
HaeIII GGCC 3 cut(s) 50, 174, 209
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 17
Hpy166II GTNNAC 2 cut(s) 109, 168
Hpy188I TCNGA 1 cut(s) 362
Hpy188III TCNNGA 2 cut(s) 180, 328
Hpy8I GTNNAC 2 cut(s) 109, 168
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 3 cut(s) 26, 88, 352
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 1 cut(s) 100
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 92
MboII GAAGA 2 cut(s) 46, 112
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 2 cut(s) 37, 156
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 2 cut(s) 40, 61
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 2 cut(s) 141, 270
MspR9I CCNGG 1 cut(s) 299
MvaI CCWGG 1 cut(s) 299
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 275
PceI AGGCCT 1 cut(s) 50
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 270
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 299
SetI ASST 2 cut(s) 272, 335
SfaNI GCATC 1 cut(s) 35
SfcI CTRYAG 1 cut(s) 112
Sse9I AATT 2 cut(s) 37, 156
SseBI AGGCCT 1 cut(s) 50
SsiI CCGC 1 cut(s) 141
SspMI CTAG 1 cut(s) 161
StuI AGGCCT 1 cut(s) 50
StyD4I CCNGG 1 cut(s) 297
StyI CCWWGG 1 cut(s) 234
TaiI ACGT 1 cut(s) 335
TasI AATT 2 cut(s) 37, 156
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 2 cut(s) 113, 242
TspRI CASTG 1 cut(s) 175
XapI RAATTY 2 cut(s) 37, 156
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.