Rorug04G0207800

ER membrane protein complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012102
Physical Location & Seq
Reverse (-)
36103433 .. 36188851
85419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0207800.1

Sequence Viewer

Length: 3972 bp
ATGGCAGCTGAATTTCTGCTTACTTTTGGTGCTGAGGGTGTGCTGAAGAAGGTGTCTTCACTTGTCAATGAGCAAATCAGTCTTGCATGGGGGTTCAAAGGAGATCTGAAGAAGCTAGGCGAGTCGTTATCACTAATCCAGAACATCTTGAATGATGCGGCGGAGAAACCACAAGCTCTGGATCGAGGCAAGGTAGTGGAAGGATGGGTGAAGAAACTCAAAGGCGTAGCTGATGATGCAGACAATGTGCTGGATGAATGCAACTATGAAGTTCTCCGACGTAAGGTTGAACTGCAAAACCACATGAAGAGGAAGGTACTCAACTTTCTTTCTGCATCCAATCCCATTATATTTCGCCATAAAATGGCAAATAGGATAAAGCATATCAATGCATCACTTTTGGATCTCAAGAGTGATGCATCTCTCATTGGATTAATTGAAAGAAGAATAGATGCAACTCCGCAAGGTGTACGGCCGGACAGAAATCAAACCGACTCATTCTTTGAGCCGGATGAAAAGGTCATTGGAAGGGAGGGTGTTGTGTCAAACATTGTTGAGAGCTTGACCAACTCCACCAATCAGCAGATCAATCTTTCAGTTATGGCCATTGTGGGAATGCCGGGATTGGGAAAGACGACTTTGGCTAAATCAGTGTACCATAAACCTGCCATAGATACACACTTCGACAAAAAAATATGGGTGTGTGTATCTAACATTTTTGAAGTGAATACGATTTTAAACCAGATGTTAGAATCTCTAAAGAGGGATAAGGCAGGAATGATGACAAATCAAGATGCATTGCTTAAATCTCTTCAAGAAGAGCTACAAGGGAAGAGATATGTTCTTATCCTAGATGATGTTTGGAATGAAGATAGTATAAAATGGGAGAGTTTGAGAAGTTGTTTGTCAAAGCTCAATTCTGCTCCGGGAAGCAACATCATCATCACTACTCGCAGTGCCAAGGTGGCATCAATTTCAGAAACACTTACTCGGTGTGAATTGGACAAACTATCAAATGACGAATGTTGGTCCATCTTGAAGCAAAGAGCATTGTTTTCATATGGCAATGATCCAGACCGAGAGAGAATTGGAAAGGAAATTGCTAAGAAGTGTGGAGGTGTCCCGTTAGTGGCAAAGGTTTTAGGAGGCATGATGCGTACTAAAAATAGTACAAAAGAATGGTTGTCAATTCAAGCAAGTCGAATATGGGAATTACCCGAAGGAGATGAAAGAATCATGTCTGTTTTAAAGTTGAGTTTTCAGAATTTGAAATCATCACTTTTGAAACAATGCTTTGCATATTGCTCAATGTTCCCAGAAGATTTCACAATTGAAAGAGAAAAGTTGATCCAACTATGGATGGCTCAGGGATTTCTCCATCCTTCTCCTGGCCAGCATATGCAACAAATGGAGGATATAGGTGATGAGTATTTCAATATTTTATGTCAAAACTCCTTATTCCAAGATGTTACCAAGGATGACAATGGCATTATAGAGGACTGTAAAATGCACGATCTTGTGCATGATCTTGCAAAAGAAGTATCCAAATGTGAGAGTTTGATACGGAATTTAAATAACGTGATGGAGGATCACGATACATCTGAGATTCGACATGTTTCACAAGTTCCTACTTCAACACGAGAAAGAATGTCAGAGTCAAGTATGGCAAGATTGCGCTCTCTATTTATGAGTGATCAAGTCCCCAGTACCATTTTTCTAAAGTTGAGAGCTTTACGTGTCTTAGATTTAGAAGAGGCAGGTATAGAGGAGTTGCCGAATTCAATTGGCAAGTTGAAGCATTTGAGGTATCTAGACATTTCCTACACAAGAATCGAGGCACTCCCAAAATCTATTGGCAAGCTCTATAACCTTCAAACACTGAGAATGCATCGTGCTAGATATCTCAAAAAGTTGCCACAGGAAATGAAAAACTTGATCAACTTGAGACATGTTTATTTTGATAAGCAAATTGAGATTCCAGCTGGGATATTGGGGCAATTGTCCAATCTTAGAACATTACCTTACTTCAGAGTGGACAAGGAGTTGGGACCTGGAATTGGAGAATTAGGTGGCCTGAAGCAATTGAGAGGCCAACTAATTATTAAGAATCTAGAACATGTGAAGAGTGAAGAAGAAGCGAAGAAGGCAAAATTGGAGGAGAAGAGAGATGTATGCGAGCTAACATTTAAATGGACAAGAGACGGCAACAATGAGCAAGGATCGGATAGTAGCGGCATTAATGATGAACATGAACATGTACTAGAAGGCCTCCGGCCAGATACTAATTTGCAAAGGCTGCAGATTAAAGGATTCAGGGGTGCCAGATTTCCGTCATGGGTGATGTGTCTCAACAACTTGAAGAAGATTAAATTATACGACTGCCCCAATTGTGAAGGAGTTCCAGCACTGGGTCAACTTCCTAATCTTAGACATGTCGAGATTTGCAGGATGGATAACCTAAAACGTGTGGGAGCTGATGGTCTAGACTCGTTCCCTCTTGTTGAGCATATGAGTATAATTAATTGTCCCAGCCTGGAGTCAATTCGGATCACACAGGGCATTGCTTCTCTCCGTGAATTGATCATAAGCGGTTGTATTGGATTGTCAAGCCTACTGATTGGGCCCGATTGCTGCACCTCTATTCAAAAATTGGTTATTCGGGGCTGTCCTAATCTAACATCACTTCCAACTACACAGGGGGACATTGCATCTCTAGAGTTGGAGATTGGAGAGTGTGATCGATTATCAAGCCTACCTAGTGGGCTCCTCCTACGCTGCACCTCTTTGAAGCTTATAGATTGTCCTAATATAACATCAATATTTCCCATCACACAGGAAATGCCATCATCTCTCCGTCAATTGTCGATTACAAATTGTACGGGATTATCAAGTCTACCACTAAGCGGGCTCCTCTCTCTTGAGGATTTGTTTATACATGGCTGCTCTAGTCTAGCACCATCCATTTCAGTCTCATCAGGCGTCCTCCGCAGTTTGACTGTTCTTAATTGTGAGGAATTGACATCCATTTCAATGCCGTCGTCAAGTCTTCTACTTGAGGAGTTGTGTATAGGGAATTGCAATAATCTACAATCTATTGTTCCAGTAGATTTACAGGGCTTCCCATGTCTCCGTGAGTTGATAATACGGCATTGTGGGAAATTAAAATATCTGCCGACAGGGTTTCACTGCCTCACCCGATTGAAGAAACTGGTTATTGGCAGTTTCTGGGAGGAGCTCCATTCCTTCCCTGAGTTTCAGCTTCCACCACATTCACAACTTGAAACGTTACACTTGATAGGGTGGCCTAAGCTAAAGTCTCTGCCCCAGCAAATTCAGCACTTGACTTGTCTAAACACTTTGTATATACGAGAATTCAGCGGAGTGGATGCTCTTCCTGAGTGGTTGGGAAATCTCACATCTCTTGAGAATCTGTATATTTGGGATTGTGAGAATCTCAAGTATCTACCTACACTCCAAGCTATGCAACGCCTCACCAAATTGAAGAGGCTCTCTATTGAGCGATGTCCTCTCCTCAAGGAAAATTGCACCAAGGACACAGGCCCTGAATGGCCCAAGATTGCTCATATCCCAACTATCTCAAGTGAGGGTTTTACTCTAGAAATACACCTTGGAGGGAGCTTTGTTGATGCAGGTGGTGGGCAACACAAATACATTGGAGGTGAAGTTCATTGGCTTGAAAAACTTGATCCCGAAAAGACTTCATGGTTGGAGCTCAACACATTTGCTTGGAGACTTGGTTATAGGGAACCACCAGTTCACTACTGGTTCAAGCACCCATATTTATCATGGAGGGTAGAGGAAGCTGTGGCAGAGTTAGAGAAGGATGGCTATGAGGAAAAAATACCGCACATATTGTTCAAGCCAGAGATAATTATGGCTAGACTAAGGGCTATCGATGTTGGTCCGAGTTCTTTTGGTCGTACAAGTGCATTTGAATATCCAATTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rab5ip

Protein Analysis

1323

Amino Acids

149.25

Weight (kDa)

6.59

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 14 - 101 4.8e-19 Rx N-terminal domain
NB-ARC PF00931 179 - 350 8.3e-37 NB-ARC domain
WHD_DRP PF23559 437 - 511 1.8e-26 Disease resistance protein Winged helix domain
LRR_14 PF23598 558 - 845 1.3e-34 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 686 - 817 4.8e-38 R13L1/DRL21 LRRs
LRR_RPS2 PF23247 1034 - 1175 2.2e-07 Plant disease resistance protein RPS2-like, leucine-rich repeats
LRR_14 PF23598 1092 - 1184 5.3e-10 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 1110 - 1174 1e-06 R13L1/DRL21 LRRs
PB1-like PF26130 1202 - 1267 1.7e-09 PB1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49540 AT5G49540
fragaria_vesca FvH4_4g20620
malus_domestica MD13G1149300.v1.1 MD16G1149600.v1.1
prunus_persica Prupe.1G113300_v2.0.a1
pyrus_communis pycom13g12850 pycom16g12810
rosa_chinensis RchiOBHm_Chr4g0425981
rosa_laevigata RLG00000007326
rosa_multiflora Rmu_ssc0000281.1_g000021
rosa_roxburghii Rroxscaffold_5G00367990
rosa_rugosa Rorug04G0207800
rosa_samantha Rh4AG264800 Rh4BG270700 Rh4CG283300 Rh4CG283600 Rh4DG267300
rosa_wichuraiana Rw4G022870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3641
Acc36I ACCTGC 3 cut(s) 673, 1748, 3641
AccB1I GGYRCC 1 cut(s) 2318
AccB7I CCANNNNNTGG 1 cut(s) 364
AccI GTMKAC 1 cut(s) 2893
AciI CCGC 9 cut(s) 158, 161, 461, 2232, 2589, 2904, 2986, 3378, 3866
AclI AACGTT 1 cut(s) 3284
AclWI GGATC 8 cut(s) 189, 411, 1064, 1342, 1596, 2227, 2555, 3701
AcoI YGGCCR 4 cut(s) 473, 603, 1390, 2273
AcsI RAATTY 6 cut(s) 11, 1264, 1567, 1777, 3330, 3371
AcuI CTGAAG 4 cut(s) 65, 128, 2011, 2096
AcyI GRCGYC 1 cut(s) 2979
AfaI GTAC 9 cut(s) 318, 471, 656, 1159, 1171, 1708, 2259, 2878, 3943
AfiI CCNNNNNNNGG 8 cut(s) 283, 364, 626, 1129, 1388, 2057, 2408, 2903
AflIII ACRYGT 7 cut(s) 1612, 1735, 1948, 2116, 2254, 2431, 2464
AjnI CCWGG 3 cut(s) 1387, 2050, 2532
AjuI GAANNNNNNNTTGG 6 cut(s) 507, 539, 2135, 2167, 3612, 3644
AloI GAACNNNNNNTCC 2 cut(s) 3669, 3701
Alw21I GWGCWC 2 cut(s) 3237, 3735
Alw26I GTCTC 7 cut(s) 1939, 2193, 2351, 2974, 3131, 3321, 3745
AlwI GGATC 8 cut(s) 189, 411, 1064, 1342, 1596, 2227, 2555, 3701
AlwNI CAGNNNCTG 2 cut(s) 3225, 3563
ApaI GGGCCC 1 cut(s) 2625
ApeKI GCWGC 5 cut(s) 5, 2296, 2631, 2775, 2940
ApoI RAATTY 6 cut(s) 11, 1264, 1567, 1777, 3330, 3371
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AseI ATTAAT 3 cut(s) 434, 2238, 2520
Asp700I GAANNNNTTC 1 cut(s) 2397
AspLEI GCGC 1 cut(s) 1677
AspS9I GGNCC 7 cut(s) 1029, 2048, 2621, 2622, 3560, 3570, 3923
AsuC2I CCSGG 2 cut(s) 621, 927
AsuHPI GGTGA 6 cut(s) 220, 1433, 2350, 3184, 3484, 3692
AvaII GGWCC 3 cut(s) 1029, 2048, 3923
BaeGI GKGCMC 1 cut(s) 2625
BalI TGGCCA 2 cut(s) 605, 1392
BanI GGYRCC 1 cut(s) 2318
BanII GRGCYC 5 cut(s) 2625, 2766, 2910, 3237, 3735
BauI CACGAG 1 cut(s) 1638
BbsI GAAGAC 2 cut(s) 48, 3038
Bbv12I GWGCWC 2 cut(s) 3237, 3735
BbvCI CCTCAGC 1 cut(s) 33
BbvI GCAGC 5 cut(s) 17, 2283, 2618, 2762, 2927
BceAI ACGGC 4 cut(s) 488, 2218, 3019, 3161
BciT130I CCWGG 3 cut(s) 1389, 2052, 2534
BciVI GTATCC 1 cut(s) 1552
BclI TGATCA 3 cut(s) 1693, 1935, 2580
BcnI CCSGG 2 cut(s) 621, 927
BcoDI GTCTC 7 cut(s) 1939, 2193, 2351, 2974, 3131, 3321, 3745
BfmI CTRYAG 1 cut(s) 2297
BfuAI ACCTGC 3 cut(s) 673, 1748, 3641
BfuI GTATCC 1 cut(s) 1552
BglI GCCNNNNNGGC 1 cut(s) 965
BglII AGATCT 1 cut(s) 103
BisI GCNGC 7 cut(s) 6, 159, 2233, 2297, 2632, 2776, 2941
BlsI GCNGC 7 cut(s) 7, 160, 2234, 2298, 2633, 2777, 2942
Bme1390I CCNGG 5 cut(s) 621, 927, 1389, 2052, 2534
Bme18I GGWCC 3 cut(s) 1029, 2048, 3923
BmgT120I GGNCC 7 cut(s) 1029, 2048, 2621, 2622, 3560, 3570, 3923
BmiI GGNNCC 6 cut(s) 2049, 2320, 2623, 2765, 2909, 3768
BmrFI CCNGG 5 cut(s) 621, 927, 1389, 2052, 2534
BmrI ACTGGG 2 cut(s) 1698, 2417
BmuI ACTGGG 2 cut(s) 1698, 2417
BpiI GAAGAC 2 cut(s) 48, 3038
BpmI CTGGAG 1 cut(s) 2555
Bpu10I CCTNAGC 3 cut(s) 33, 1365, 3306
BpuEI CTTGAG 8 cut(s) 392, 1963, 2939, 3074, 3440, 3443, 3518, 3583
BpuMI CCSGG 2 cut(s) 621, 927
Bsa29I ATCGAT 2 cut(s) 2740, 3915
BsaAI YACGTR 1 cut(s) 1736
BsaHI GRCGYC 1 cut(s) 2979
BsaJI CCNNGG 4 cut(s) 960, 1473, 3549, 3628
BsaXI ACNNNNNCTCC 6 cut(s) 3456, 3486, 3669, 3699, 3742, 3772
Bsc4I CCNNNNNNNGG 8 cut(s) 283, 364, 626, 1129, 1388, 2057, 2408, 2903
Bse1I ACTGG 6 cut(s) 1704, 2412, 3101, 3213, 3773, 3788
Bse3DI GCAATG 4 cut(s) 797, 1072, 2559, 2703
BseBI CCWGG 3 cut(s) 1389, 2052, 2534
BseCI ATCGAT 2 cut(s) 2740, 3915
BseDI CCNNGG 4 cut(s) 960, 1473, 3549, 3628
BseLI CCNNNNNNNGG 8 cut(s) 283, 364, 626, 1129, 1388, 2057, 2408, 2903
BseMI GCAATG 4 cut(s) 797, 1072, 2559, 2703
BseMII CTCAG 6 cut(s) 24, 1379, 1593, 1871, 3240, 3387
BseNI ACTGG 6 cut(s) 1704, 2412, 3101, 3213, 3773, 3788
BseRI GAGGAG 7 cut(s) 1781, 2171, 2756, 2900, 3071, 3245, 3521
BseSI GKGCMC 1 cut(s) 2625
BseX3I CGGCCG 1 cut(s) 473
BseXI GCAGC 5 cut(s) 17, 2283, 2618, 2762, 2927
BseYI CCCAGC 3 cut(s) 1982, 2528, 3324
BsgI GTGCAG 2 cut(s) 2617, 2761
Bsh1285I CGRYCG 1 cut(s) 476
BshNI GGYRCC 1 cut(s) 2318
BshVI ATCGAT 2 cut(s) 2740, 3915
BsiEI CGRYCG 1 cut(s) 476
BsiHKAI GWGCWC 2 cut(s) 3237, 3735
BsiSI CCGG 5 cut(s) 476, 509, 620, 926, 2272
BslFI GGGAC 5 cut(s) 1106, 1685, 2061, 2511, 2714
BslI CCNNNNNNNGG 8 cut(s) 283, 364, 626, 1129, 1388, 2057, 2408, 2903
BsmAI GTCTC 7 cut(s) 1939, 2193, 2351, 2974, 3131, 3321, 3745
BsmBI CGTCTC 1 cut(s) 2193
BsmFI GGGAC 5 cut(s) 1106, 1685, 2061, 2511, 2714
BsmI GAATGC 3 cut(s) 263, 621, 1890
Bsp120I GGGCCC 1 cut(s) 2621
Bsp1286I GDGCHC 5 cut(s) 2625, 2766, 2910, 3237, 3735
BspACI CCGC 9 cut(s) 158, 161, 461, 2232, 2589, 2904, 2986, 3378, 3866
BspCNI CTCAG 6 cut(s) 25, 1378, 1594, 1872, 3241, 3388
BspDI ATCGAT 2 cut(s) 2740, 3915
BspLI GGNNCC 6 cut(s) 2049, 2320, 2623, 2765, 2909, 3768
BspMAI CTGCAG 1 cut(s) 2301
BspMI ACCTGC 3 cut(s) 673, 1748, 3641
BspPI GGATC 8 cut(s) 189, 411, 1064, 1342, 1596, 2227, 2555, 3701
BspQI GCTCTTC 2 cut(s) 813, 3396
BspT107I GGYRCC 1 cut(s) 2318
BsrDI GCAATG 4 cut(s) 797, 1072, 2559, 2703
BsrI ACTGG 6 cut(s) 1704, 2412, 3101, 3213, 3773, 3788
BssECI CCNNGG 4 cut(s) 960, 1473, 3549, 3628
BssNI GRCGYC 1 cut(s) 2979
BssSI CACGAG 1 cut(s) 1638
BssT1I CCWWGG 4 cut(s) 960, 1473, 3549, 3628
Bst2BI CACGAG 1 cut(s) 1638
Bst2UI CCWGG 3 cut(s) 1389, 2052, 2534
Bst4CI ACNGT 2 cut(s) 1502, 2998
Bst6I CTCTTC 9 cut(s) 302, 813, 816, 827, 1746, 2117, 2156, 3396, 3497
BstACI GRCGYC 1 cut(s) 2979
BstAPI GCANNNNNTGC 1 cut(s) 2296
BstBAI YACGTR 1 cut(s) 1736
BstC8I GCNNGC 4 cut(s) 1394, 1859, 2177, 2906
BstHHI GCGC 1 cut(s) 1677
BstMAI GTCTC 7 cut(s) 1939, 2193, 2351, 2974, 3131, 3321, 3745
BstMCI CGRYCG 1 cut(s) 476
BstMWI GCNNNNNNNGC 6 cut(s) 236, 965, 2144, 2296, 2985, 3334
BstNI CCWGG 3 cut(s) 1389, 2052, 2534
BstNSI RCATGY 5 cut(s) 1616, 1952, 2120, 2258, 2435
BstSCI CCNGG 5 cut(s) 619, 925, 1387, 2050, 2532
BstSFI CTRYAG 1 cut(s) 2297
BstSLI GKGCMC 1 cut(s) 2625
BstV1I GCAGC 5 cut(s) 17, 2283, 2618, 2762, 2927
BstV2I GAAGAC 2 cut(s) 48, 3038
BstX2I RGATCY 2 cut(s) 103, 403
BstYI RGATCY 2 cut(s) 103, 403
BstZI CGGCCG 1 cut(s) 473
Bsu15I ATCGAT 2 cut(s) 2740, 3915
BsuI GTATCC 1 cut(s) 1552
BsuTUI ATCGAT 2 cut(s) 2740, 3915
BtgZI GCGATG 1 cut(s) 3535
BtsI GCAGTG 2 cut(s) 961, 3184
BtsIMutI CAGTG 5 cut(s) 657, 961, 1877, 2405, 3184
BveI ACCTGC 3 cut(s) 673, 1748, 3641
Cac8I GCNNGC 4 cut(s) 1394, 1859, 2177, 2906
CaiI CAGNNNCTG 2 cut(s) 3225, 3563
CfoI GCGC 1 cut(s) 1677
Cfr13I GGNCC 7 cut(s) 1029, 2048, 2621, 2622, 3560, 3570, 3923
ClaI ATCGAT 2 cut(s) 2740, 3915
CseI GACGC 1 cut(s) 2968
Csp6I GTAC 9 cut(s) 317, 470, 655, 1158, 1170, 1707, 2258, 2877, 3942
CviQI GTAC 9 cut(s) 317, 470, 655, 1158, 1170, 1707, 2258, 2877, 3942
DraI TTTAAA 4 cut(s) 738, 1248, 1572, 2188
EaeI YGGCCR 4 cut(s) 473, 603, 1390, 2273
EagI CGGCCG 1 cut(s) 473
Eam1104I CTCTTC 9 cut(s) 302, 813, 816, 827, 1746, 2117, 2156, 3396, 3497
EarI CTCTTC 9 cut(s) 302, 813, 816, 827, 1746, 2117, 2156, 3396, 3497
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 2 cut(s) 3235, 3733
EclXI CGGCCG 1 cut(s) 473
Eco130I CCWWGG 4 cut(s) 960, 1473, 3549, 3628
Eco147I AGGCCT 1 cut(s) 2268
Eco24I GRGCYC 5 cut(s) 2625, 2766, 2910, 3237, 3735
Eco32I GATATC 1 cut(s) 1901
Eco47I GGWCC 3 cut(s) 1029, 2048, 3923
Eco52I CGGCCG 1 cut(s) 473
Eco53kI GAGCTC 2 cut(s) 3235, 3733
Eco57I CTGAAG 4 cut(s) 65, 128, 2011, 2096
EcoICRI GAGCTC 2 cut(s) 3235, 3733
EcoO109I RGGNCCY 2 cut(s) 2048, 3560
EcoRI GAATTC 2 cut(s) 1777, 3371
EcoRII CCWGG 3 cut(s) 1387, 2050, 2532
EcoRV GATATC 1 cut(s) 1901
EcoT14I CCWWGG 4 cut(s) 960, 1473, 3549, 3628
EcoT22I ATGCAT 4 cut(s) 394, 421, 799, 1890
EcoT38I GRGCYC 5 cut(s) 2625, 2766, 2910, 3237, 3735
ErhI CCWWGG 4 cut(s) 960, 1473, 3549, 3628
Esp3I CGTCTC 1 cut(s) 2193
FaqI GGGAC 5 cut(s) 1106, 1685, 2061, 2511, 2714
FauI CCCGC 1 cut(s) 2897
FauNDI CATATG 3 cut(s) 1060, 1398, 2508
FbaI TGATCA 3 cut(s) 1693, 1935, 2580
FblI GTMKAC 1 cut(s) 2893
Fnu4HI GCNGC 7 cut(s) 6, 159, 2233, 2297, 2632, 2776, 2941
FriOI GRGCYC 5 cut(s) 2625, 2766, 2910, 3237, 3735
Fsp4HI GCNGC 7 cut(s) 6, 159, 2233, 2297, 2632, 2776, 2941
GlaI GCGC 1 cut(s) 1676
GluI GCNGC 7 cut(s) 6, 159, 2233, 2297, 2632, 2776, 2941
GsaI CCCAGC 3 cut(s) 1986, 2532, 3328
GsuI CTGGAG 1 cut(s) 2555
HapII CCGG 5 cut(s) 476, 509, 620, 926, 2272
HgaI GACGC 1 cut(s) 2968
HhaI GCGC 1 cut(s) 1677
Hin1I GRCGYC 1 cut(s) 2979
Hin6I GCGC 1 cut(s) 1675
HinP1I GCGC 1 cut(s) 1675
HincII GTYRAC 1 cut(s) 2414
HindII GTYRAC 1 cut(s) 2414
HindIII AAGCTT 1 cut(s) 2789
HpaII CCGG 5 cut(s) 476, 509, 620, 926, 2272
HphI GGTGA 6 cut(s) 220, 1433, 2350, 3184, 3484, 3692
Hpy166II GTNNAC 6 cut(s) 470, 655, 2035, 2414, 2894, 3778
Hpy8I GTNNAC 6 cut(s) 470, 655, 2035, 2414, 2894, 3778
Hpy99I CGWCG 2 cut(s) 282, 3040
HpyCH4III ACNGT 2 cut(s) 1502, 2998
HpyCH4IV ACGT 5 cut(s) 280, 1578, 1735, 2464, 3284
HpyF10VI GCNNNNNNNGC 6 cut(s) 236, 965, 2144, 2296, 2985, 3334
HpySE526I ACGT 5 cut(s) 280, 1578, 1735, 2464, 3284
Hsp92I GRCGYC 1 cut(s) 2979
HspAI GCGC 1 cut(s) 1675
Ksp22I TGATCA 3 cut(s) 1693, 1935, 2580
LguI GCTCTTC 2 cut(s) 813, 3396
LmnI GCTCC 8 cut(s) 928, 2471, 2769, 2913, 3232, 3240, 3636, 3730
Lsp1109I GCAGC 5 cut(s) 17, 2283, 2618, 2762, 2927
MaeII ACGT 5 cut(s) 280, 1578, 1735, 2464, 3284
MaeIII GTNAC 2 cut(s) 1468, 3285
MfeI CAATTG 6 cut(s) 1329, 1782, 1997, 2081, 2386, 2858
MflI RGATCY 2 cut(s) 103, 403
MhlI GDGCHC 5 cut(s) 2625, 2766, 2910, 3237, 3735
MlsI TGGCCA 2 cut(s) 605, 1392
MluNI TGGCCA 2 cut(s) 605, 1392
MlyI GAGTC 5 cut(s) 131, 488, 1664, 2480, 2546
MmeI TCCRAC 5 cut(s) 301, 1375, 2700, 2711, 3708
Mox20I TGGCCA 2 cut(s) 605, 1392
Mph1103I ATGCAT 4 cut(s) 394, 421, 799, 1890
MroXI GAANNNNTTC 1 cut(s) 2397
MscI TGGCCA 2 cut(s) 605, 1392
MslI CAYNNNNRTG 4 cut(s) 387, 2188, 2253, 3029
Msp20I TGGCCA 2 cut(s) 605, 1392
MspA1I CMGCKG 3 cut(s) 8, 1982, 3378
MspI CCGG 5 cut(s) 476, 509, 620, 926, 2272
MspR9I CCNGG 5 cut(s) 621, 927, 1389, 2052, 2534
MunI CAATTG 6 cut(s) 1329, 1782, 1997, 2081, 2386, 2858
Mva1269I GAATGC 3 cut(s) 263, 621, 1890
MvaI CCWGG 3 cut(s) 1389, 2052, 2534
MwoI GCNNNNNNNGC 6 cut(s) 236, 965, 2144, 2296, 2985, 3334
NciI CCSGG 2 cut(s) 621, 927
NdeI CATATG 3 cut(s) 1060, 1398, 2508
NlaIV GGNNCC 6 cut(s) 2049, 2320, 2623, 2765, 2909, 3768
NsiI ATGCAT 4 cut(s) 394, 421, 799, 1890
NspI RCATGY 5 cut(s) 1616, 1952, 2120, 2258, 2435
PaqCI CACCTGC 1 cut(s) 3641
PceI AGGCCT 1 cut(s) 2268
PciI ACATGT 5 cut(s) 1612, 1948, 2116, 2254, 2431
PciSI GCTCTTC 2 cut(s) 813, 3396
PctI GAATGC 3 cut(s) 263, 621, 1890
PdmI GAANNNNTTC 1 cut(s) 2397
PfeI GAWTC 9 cut(s) 752, 1233, 1606, 1830, 1975, 2107, 2310, 3427, 3451
PflMI CCANNNNNTGG 1 cut(s) 364
PfoI TCCNGGA 1 cut(s) 925
PkrI GCNGC 7 cut(s) 7, 160, 2234, 2298, 2633, 2777, 2942
PleI GAGTC 5 cut(s) 130, 488, 1663, 2480, 2545
PpsI GAGTC 5 cut(s) 130, 488, 1663, 2480, 2545
Ppu21I YACGTR 1 cut(s) 1736
PpuMI RGGWCCY 1 cut(s) 2048
PscI ACATGT 5 cut(s) 1612, 1948, 2116, 2254, 2431
PshBI ATTAAT 3 cut(s) 434, 2238, 2520
Psp124BI GAGCTC 2 cut(s) 3237, 3735
Psp1406I AACGTT 1 cut(s) 3284
Psp5II RGGWCCY 1 cut(s) 2048
Psp6I CCWGG 3 cut(s) 1387, 2050, 2532
PspFI CCCAGC 3 cut(s) 1982, 2528, 3324
PspGI CCWGG 3 cut(s) 1387, 2050, 2532
PspN4I GGNNCC 6 cut(s) 2049, 2320, 2623, 2765, 2909, 3768
PspOMI GGGCCC 1 cut(s) 2621
PspPI GGNCC 7 cut(s) 1029, 2048, 2621, 2622, 3560, 3570, 3923
PspPPI RGGWCCY 1 cut(s) 2048
PstI CTGCAG 1 cut(s) 2301
PstNI CAGNNNCTG 2 cut(s) 3225, 3563
PsuI RGATCY 2 cut(s) 103, 403
PvuII CAGCTG 2 cut(s) 8, 1982
RsaI GTAC 9 cut(s) 318, 471, 656, 1159, 1171, 1708, 2259, 2878, 3943
RsaNI GTAC 9 cut(s) 317, 470, 655, 1158, 1170, 1707, 2258, 2877, 3942
RseI CAYNNNNRTG 4 cut(s) 387, 2188, 2253, 3029
SacI GAGCTC 2 cut(s) 3237, 3735
SapI GCTCTTC 2 cut(s) 813, 3396
SatI GCNGC 7 cut(s) 6, 159, 2233, 2297, 2632, 2776, 2941
Sau96I GGNCC 7 cut(s) 1029, 2048, 2621, 2622, 3560, 3570, 3923
SchI GAGTC 5 cut(s) 131, 488, 1664, 2480, 2546
ScrFI CCNGG 5 cut(s) 621, 927, 1389, 2052, 2534
SduI GDGCHC 5 cut(s) 2625, 2766, 2910, 3237, 3735
SfcI CTRYAG 1 cut(s) 2297
SinI GGWCC 3 cut(s) 1029, 2048, 3923
SmiI ATTTAAAT 2 cut(s) 1572, 2188
SmiMI CAYNNNNRTG 4 cut(s) 387, 2188, 2253, 3029
SmlI CTYRAG 8 cut(s) 407, 1942, 2918, 3053, 3422, 3455, 3533, 3598
SmoI CTYRAG 8 cut(s) 407, 1942, 2918, 3053, 3422, 3455, 3533, 3598
SseBI AGGCCT 1 cut(s) 2268
SsiI CCGC 9 cut(s) 158, 161, 461, 2232, 2589, 2904, 2986, 3378, 3866
SspI AATATT 2 cut(s) 1438, 2820
SstI GAGCTC 2 cut(s) 3237, 3735
StuI AGGCCT 1 cut(s) 2268
StyD4I CCNGG 5 cut(s) 619, 925, 1387, 2050, 2532
StyI CCWWGG 4 cut(s) 960, 1473, 3549, 3628
SwaI ATTTAAAT 2 cut(s) 1572, 2188
TaaI ACNGT 2 cut(s) 1502, 2998
TaiI ACGT 5 cut(s) 283, 1581, 1738, 2467, 3287
TaqI TCGA 9 cut(s) 184, 684, 1201, 1609, 1833, 2436, 2740, 2864, 3915
TaqII GACCGA 1 cut(s) 1092
TatI WGTACW 2 cut(s) 1169, 2257
TauI GCSGC 2 cut(s) 161, 2235
TfiI GAWTC 9 cut(s) 752, 1233, 1606, 1830, 1975, 2107, 2310, 3427, 3451
TscAI CASTG 5 cut(s) 657, 961, 1884, 2412, 3191
TseI GCWGC 5 cut(s) 5, 2296, 2631, 2775, 2940
TspGWI ACGGA 5 cut(s) 1579, 2319, 2561, 2843, 3119
TspRI CASTG 5 cut(s) 657, 961, 1884, 2412, 3191
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 3 cut(s) 1029, 2048, 3923
VspI ATTAAT 3 cut(s) 434, 2238, 2520
XapI RAATTY 6 cut(s) 11, 1264, 1567, 1777, 3330, 3371
XbaI TCTAGA 5 cut(s) 1810, 2110, 2482, 2713, 3616
XceI RCATGY 5 cut(s) 1616, 1952, 2120, 2258, 2435
XcmI CCANNNNNNNNNTGG 3 cut(s) 1385, 3780, 3804
XmiI GTMKAC 1 cut(s) 2893
XmnI GAANNNNTTC 1 cut(s) 2397
Zsp2I ATGCAT 4 cut(s) 394, 421, 799, 1890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.