AT5G49550

Biogenesis of lysosome-related organelles complex 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013428
Physical Location & Seq
Reverse (-)
20106532 .. 20107208
677 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G49550.1

Sequence Viewer

Length: 384 bp
ATGGCGGATTCACGAGATGATCTAGCTGAATCGCTACAAAATCTATTCACGAGTGTTTCATCTATGGTCAAATCCGAGCTCCAGGGAACGAACAACCATCTAGATCTATTGGAGAAGATGAACCTGAGAGTTGCGTCAGAGTACGATGATATGGGTGACGTGGCAGCTGGGCTCAGAGTTTTCGCAGAACAGATGAAATCAAAAAGTGGTGGCTTGGATGAATTTGTAGGACAAATGGATGCTATCGAGAAACAAGTGTCGGAGTTTGAAGCTGTGATCTCTGTTCTAGATCGATATGTCTCTGTCCTAGAATCTAAAATCCGAGCTGAGTATCGTCATCCTCATCATCAGCGTCGCTCTAATGATTCTGTTGTTACAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0016491 GO:0031082 GO:0031083 GO:0032991 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BLOC1_2

Protein Analysis

127

Amino Acids

14.27

Weight (kDa)

4.83

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BLOC1_2 PF10046 13 - 108 6.4e-29 Biogenesis of lysosome-related organelles complex-1 subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49550
fragaria_vesca FvH4_6g24710 FvH4_6g46100
malus_domestica MD09G1077100.v1.1 MD17G1067500.v1.1
prunus_persica Prupe.3G247000_v2.0.a1
pyrus_communis pycom17g06780
rosa_chinensis RchiOBHm_Chr2g0164421
rosa_laevigata RLG00000021460
rosa_multiflora Rmu_sc0039370.1_g000001
rosa_roxburghii Rroxscaffold_2G00086580
rosa_rugosa Rorug02G0508400
rosa_samantha Rh2AG576500 Rh2BG587500 Rh2CG558300 Rh2DG598100
rosa_wichuraiana Rw2G047750 Rw2G047850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 143
AgsI TTSAA 1 cut(s) 269
AjiI CACGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 5 cut(s) 26, 79, 167, 272, 326
AluI AGCT 5 cut(s) 26, 79, 167, 272, 326
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 1 cut(s) 304
ApeKI GCWGC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 221
AsuHPI GGTGA 1 cut(s) 167
BanII GRGCYC 2 cut(s) 81, 174
BauI CACGAG 2 cut(s) 12, 49
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 176
BccI CCATC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 83
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 4 cut(s) 23, 101, 287, 308
BglII AGATCT 1 cut(s) 103
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 65
Bsa29I ATCGAT 1 cut(s) 292
BsaJI CCNNGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 3 cut(s) 223, 244, 337
BseMII CTCAG 3 cut(s) 116, 187, 318
BseXI GCAGC 1 cut(s) 176
BseYI CCCAGC 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 304
Bsp1286I GDGCHC 2 cut(s) 81, 174
Bsp143I GATC 4 cut(s) 19, 103, 276, 289
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 117, 186, 319
BspDI ATCGAT 1 cut(s) 292
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 4 cut(s) 19, 103, 276, 289
BssSI CACGAG 2 cut(s) 12, 49
Bst2BI CACGAG 2 cut(s) 12, 49
Bst2UI CCWGG 1 cut(s) 83
BstDEI CTNAG 3 cut(s) 125, 173, 327
BstF5I GGATG 3 cut(s) 223, 244, 337
BstKTI GATC 4 cut(s) 22, 106, 279, 292
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 4 cut(s) 19, 103, 276, 289
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 176
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
Bsu15I ATCGAT 1 cut(s) 292
BsuTUI ATCGAT 1 cut(s) 292
BtrI CACGTC 1 cut(s) 160
BtsCI GGATG 3 cut(s) 223, 244, 337
ClaI ATCGAT 1 cut(s) 292
CseI GACGC 2 cut(s) 123, 341
Csp6I GTAC 1 cut(s) 142
CviJI RGCY 7 cut(s) 26, 79, 167, 172, 213, 272, 326
CviKI_1 RGCY 7 cut(s) 26, 79, 167, 172, 213, 272, 326
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 3 cut(s) 125, 173, 327
DpnI GATC 4 cut(s) 21, 105, 278, 291
DpnII GATC 4 cut(s) 19, 103, 276, 289
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 79
Eco24I GRGCYC 2 cut(s) 81, 174
Eco53kI GAGCTC 1 cut(s) 79
EcoICRI GAGCTC 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 81, 174
FaiI YATR 3 cut(s) 65, 152, 297
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 3 cut(s) 230, 251, 324
FriOI GRGCYC 2 cut(s) 81, 174
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 4 cut(s) 23, 101, 287, 308
GluI GCNGC 1 cut(s) 165
GsaI CCCAGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 65
HgaI GACGC 2 cut(s) 123, 341
HinfI GANTC 4 cut(s) 8, 29, 311, 365
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 5 cut(s) 76, 139, 176, 262, 323
Hpy188III TCNNGA 5 cut(s) 12, 49, 101, 247, 287
Hpy99I CGWCG 1 cut(s) 357
HpyCH4IV ACGT 1 cut(s) 159
HpyF3I CTNAG 3 cut(s) 125, 173, 327
HpySE526I ACGT 1 cut(s) 159
Kzo9I GATC 4 cut(s) 19, 103, 276, 289
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 4 cut(s) 68, 95, 137, 153
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 1 cut(s) 229
MaeI CTAG 4 cut(s) 23, 101, 287, 308
MaeII ACGT 1 cut(s) 159
MaeIII GTNAC 2 cut(s) 155, 373
MalI GATC 4 cut(s) 21, 105, 278, 291
MboI GATC 4 cut(s) 19, 103, 276, 289
MboII GAAGA 1 cut(s) 127
MflI RGATCY 1 cut(s) 103
MhlI GDGCHC 2 cut(s) 81, 174
MluCI AATT 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
NdeII GATC 4 cut(s) 19, 103, 276, 289
NmuCI GTSAC 1 cut(s) 155
PfeI GAWTC 4 cut(s) 8, 29, 311, 365
PkrI GCNGC 1 cut(s) 166
Psp124BI GAGCTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 81
PspFI CCCAGC 1 cut(s) 167
PspGI CCWGG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 167
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SacI GAGCTC 1 cut(s) 81
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 4 cut(s) 19, 103, 276, 289
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 2 cut(s) 81, 174
SetI ASST 7 cut(s) 28, 81, 126, 162, 169, 274, 328
SfaNI GCATC 1 cut(s) 229
Sse9I AATT 1 cut(s) 221
SsiI CCGC 1 cut(s) 5
SspMI CTAG 4 cut(s) 23, 101, 287, 308
SstI GAGCTC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 162
TaqI TCGA 2 cut(s) 246, 292
TasI AATT 1 cut(s) 221
TfiI GAWTC 4 cut(s) 8, 29, 311, 365
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 1 cut(s) 164
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 4 cut(s) 48, 134, 209, 234
XapI RAATTY 1 cut(s) 221
XbaI TCTAGA 2 cut(s) 100, 286
XspI CTAG 4 cut(s) 23, 101, 287, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.