Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0013428

Physical Location & Seq

Genomic Coordinates Forward (+)

23800540 .. 23801154

Gene Structure 615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G247000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGCTGGGAAAGAGGAGCAAGACAAGCTCGCCGAGTCTCTCAACGATCTCTTCACCAGCGTCTCCACTATGGTCAAATCCGAGCTCCAGGGATCAACCAACCACCTGGACCTTTTGGAGAAGATGAATCTGAGAGTGGCCGAAGAGTACAAAGGCTTCGGCGACGTGGCCTCTGGGCTGAGCGTCTTCGTAGAGCAGCTCAAGTCGAAAAGCGGCAGCTTTGAAGAGTATGCGAAGCAGATTGACGTTATAGAGCAGCAAGTCACGGAGTTCGAAGCTGTGATTTCAGTGCTGGATAGATATGTGTCTATGTTAGAGTCCAAAGTCCAATCTGTGTATCAGAATCCGTCTCCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0016491 GO:0031082 GO:0031083 GO:0032991 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BLOC1_2

Protein Analysis

120

Amino Acids

13.26

Weight (kDa)

4.52

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49550
fragaria_vesca	FvH4_6g24710 FvH4_6g46100
malus_domestica	MD09G1077100.v1.1 MD17G1067500.v1.1
prunus_persica	Prupe.3G247000_v2.0.a1
pyrus_communis	pycom17g06780
rosa_chinensis	RchiOBHm_Chr2g0164421
rosa_laevigata	RLG00000021460
rosa_multiflora	Rmu_sc0039370.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086580
rosa_rugosa	Rorug02G0508400
rosa_samantha	Rh2AG576500 Rh2BG587500 Rh2CG558300 Rh2DG598100
rosa_wichuraiana	Rw2G047750 Rw2G047850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	138
AfaI	GTAC	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	224
AjiI	CACGTC	1 cut(s)	166
AjnI	CCWGG	2 cut(s)	87, 105
AluBI	AGCT	5 cut(s)	28, 85, 199, 219, 278
AluI	AGCT	5 cut(s)	28, 85, 199, 219, 278
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	3 cut(s)	42, 67, 354
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	2 cut(s)	138, 168
ApeKI	GCWGC	3 cut(s)	196, 216, 256
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	46
AsuII	TTCGAA	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	140, 172
BbsI	GAAGAC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	208, 228, 268
BciT130I	CCWGG	2 cut(s)	89, 107
BcoDI	GTCTC	3 cut(s)	42, 67, 354
BisI	GCNGC	4 cut(s)	197, 214, 217, 257
BlpI	GCTNAGC	1 cut(s)	179
BlsI	GCNGC	4 cut(s)	198, 215, 218, 258
Bme1390I	CCNGG	2 cut(s)	89, 107
Bme18I	GGWCC	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	166
BmgT120I	GGNCC	1 cut(s)	109
BmrFI	CCNGG	2 cut(s)	89, 107
BpiI	GAAGAC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	71
Bpu1102I	GCTNAGC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	88
BseBI	CCWGG	2 cut(s)	89, 107
BseDI	CCNNGG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	122, 170
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	3 cut(s)	208, 228, 268
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	2 cut(s)	140, 170
BsiHKAI	GWGCWC	1 cut(s)	87
BsmAI	GTCTC	3 cut(s)	42, 67, 354
BsmBI	CGTCTC	2 cut(s)	67, 354
BsnI	GGCC	2 cut(s)	140, 170
Bsp119I	TTCGAA	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	46, 92
Bsp1720I	GCTNAGC	1 cut(s)	179
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	2 cut(s)	140, 170
BspCNI	CTCAG	2 cut(s)	123, 171
BspPI	GGATC	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	46, 92
Bst2UI	CCWGG	2 cut(s)	89, 107
Bst6I	CTCTTC	3 cut(s)	56, 138, 219
BstBI	TTCGAA	1 cut(s)	273
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	131, 179
BstKTI	GATC	2 cut(s)	49, 95
BstMAI	GTCTC	3 cut(s)	42, 67, 354
BstMBI	GATC	2 cut(s)	46, 92
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	2 cut(s)	89, 107
BstSCI	CCNGG	2 cut(s)	87, 105
BstV1I	GCAGC	3 cut(s)	208, 228, 268
BstV2I	GAAGAC	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	140, 170
BtrI	CACGTC	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	109
CseI	GACGC	2 cut(s)	49, 172
Csp6I	GTAC	1 cut(s)	148
CviQI	GTAC	1 cut(s)	148
DdeI	CTNAG	2 cut(s)	131, 179
DpnI	GATC	2 cut(s)	48, 94
DpnII	GATC	2 cut(s)	46, 92
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	56, 138, 219
EarI	CTCTTC	3 cut(s)	56, 138, 219
Ecl136II	GAGCTC	1 cut(s)	85
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoRII	CCWGG	2 cut(s)	87, 105
EcoT38I	GRGCYC	1 cut(s)	87
Esp3I	CGTCTC	2 cut(s)	67, 354
FaiI	YATR	5 cut(s)	71, 231, 251, 303, 311
Fnu4HI	GCNGC	4 cut(s)	197, 214, 217, 257
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	4 cut(s)	197, 214, 217, 257
GluI	GCNGC	4 cut(s)	197, 214, 217, 257
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	140, 170
HgaI	GACGC	2 cut(s)	49, 172
HinfI	GANTC	4 cut(s)	35, 127, 317, 343
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	82, 132, 342
Hpy188III	TCNNGA	1 cut(s)	357
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	165, 246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	2 cut(s)	131, 179
HpySE526I	ACGT	2 cut(s)	165, 246
Kzo9I	GATC	2 cut(s)	46, 92
LmnI	GCTCC	2 cut(s)	16, 90
LpnPI	CCDG	7 cut(s)	70, 74, 92, 101, 119, 159, 278
Lsp1109I	GCAGC	3 cut(s)	208, 228, 268
MaeII	ACGT	2 cut(s)	165, 246
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	2 cut(s)	48, 94
MboI	GATC	2 cut(s)	46, 92
MboII	GAAGA	5 cut(s)	43, 133, 155, 178, 236
MhlI	GDGCHC	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	44, 326
MnlI	CCTC	2 cut(s)	7, 181
MspR9I	CCNGG	2 cut(s)	89, 107
MvaI	CCWGG	2 cut(s)	89, 107
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	2 cut(s)	46, 92
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	127, 343
PkrI	GCNGC	4 cut(s)	198, 215, 218, 258
PleI	GAGTC	2 cut(s)	43, 325
PpsI	GAGTC	2 cut(s)	43, 325
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	2 cut(s)	87, 105
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	2 cut(s)	87, 105
PspPI	GGNCC	1 cut(s)	109
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SacI	GAGCTC	1 cut(s)	87
SatI	GCNGC	4 cut(s)	197, 214, 217, 257
Sau3AI	GATC	2 cut(s)	46, 92
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	44, 326
ScrFI	CCNGG	2 cut(s)	89, 107
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	9 cut(s)	30, 87, 108, 114, 168, 201, 221, 249, 280
SfuI	TTCGAA	1 cut(s)	273
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SsiI	CCGC	1 cut(s)	213
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	2 cut(s)	87, 105
TaiI	ACGT	2 cut(s)	168, 249
TaqI	TCGA	2 cut(s)	206, 273
TatI	WGTACW	1 cut(s)	147
TauI	GCSGC	1 cut(s)	216
TfiI	GAWTC	2 cut(s)	127, 343
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	3 cut(s)	196, 216, 256
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	2 cut(s)	281, 336
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.