Rorug02G0508400

Biogenesis of lysosome-related organelles complex 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0013428
Physical Location & Seq
Forward (+)
63965775 .. 63967440
1666 bp
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UTR
Exon/CDS
Intron
Rorug02G0508400.1

Sequence Viewer

Length: 351 bp
ATGCTGATAAGGATAACACTTGCTTTGCTCTTTCTCTCACTAGTTCCACTCAAATCAGTGGATGCAGATTATGAGCAATGGTGTATCGCCGACGAACAAACCCCGGATGATGAGTTGCAGGCAGCAATAGATTGGGCTTGTAGTGGAGGTGGAGGTGCAGATTGTAGCAAGATTCAGATGAACCAACCTTGCTTTTACCCAAACACTCTTAAAGACCATGCTTCCTATGCCTTCAACAACTACTTCCAGAAGTTCAAACACAAAGGTGGATCTTGCTACTTCAAGGCAGCTGCCATGATTACAGAACTTGATCCTAGTCATGGCCCTTGCAAGTATGACTATTTTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0016491 GO:0031082 GO:0031083 GO:0032991 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BLOC1_2

Protein Analysis

116

Amino Acids

13.02

Weight (kDa)

4.92

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 26 - 99 5.4e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49550
fragaria_vesca FvH4_6g24710 FvH4_6g46100
malus_domestica MD09G1077100.v1.1 MD17G1067500.v1.1
prunus_persica Prupe.3G247000_v2.0.a1
pyrus_communis pycom17g06780
rosa_chinensis RchiOBHm_Chr2g0164421
rosa_laevigata RLG00000021460
rosa_multiflora Rmu_sc0039370.1_g000001
rosa_roxburghii Rroxscaffold_2G00086580
rosa_rugosa Rorug02G0508400
rosa_samantha Rh2AG576500 Rh2BG587500 Rh2CG558300 Rh2DG598100
rosa_wichuraiana Rw2G047750 Rw2G047850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 277, 305
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 3 cut(s) 235, 256, 283
AhlI ACTAGT 1 cut(s) 40
AleI CACNNNNGTG 1 cut(s) 264
AluBI AGCT 1 cut(s) 290
AluI AGCT 1 cut(s) 290
AlwI GGATC 2 cut(s) 277, 305
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 3 cut(s) 122, 287, 290
AspS9I GGNCC 1 cut(s) 323
AsuC2I CCSGG 1 cut(s) 104
BbvI GCAGC 3 cut(s) 134, 277, 299
BcnI CCSGG 1 cut(s) 104
BcuI ACTAGT 1 cut(s) 40
BfaI CTAG 2 cut(s) 41, 315
BisI GCNGC 3 cut(s) 123, 288, 291
BlsI GCNGC 3 cut(s) 124, 289, 292
Bme1390I CCNGG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 323
BmrFI CCNGG 1 cut(s) 104
BmsI GCATC 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse3DI GCAATG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 2 cut(s) 67, 112
BseLI CCNNNNNNNGG 1 cut(s) 320
BseMI GCAATG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 134, 277, 299
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 324
BsiSI CCGG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 320
BsnI GGCC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 269, 310
BspANI GGCC 1 cut(s) 324
BspPI GGATC 2 cut(s) 277, 305
BsrDI GCAATG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 2 cut(s) 269, 310
BstC8I GCNNGC 1 cut(s) 120
BstF5I GGATG 2 cut(s) 67, 112
BstKTI GATC 2 cut(s) 272, 313
BstMBI GATC 2 cut(s) 269, 310
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 102
BstV1I GCAGC 3 cut(s) 134, 277, 299
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 324
BtsCI GGATG 2 cut(s) 67, 112
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 323
CviAII CATG 3 cut(s) 218, 295, 320
CviJI RGCY 3 cut(s) 137, 290, 324
CviKI_1 RGCY 3 cut(s) 137, 290, 324
DpnI GATC 2 cut(s) 271, 312
DpnII GATC 2 cut(s) 269, 310
FaeI CATG 3 cut(s) 221, 298, 323
FaiI YATR 6 cut(s) 72, 219, 228, 296, 321, 336
FatI CATG 3 cut(s) 217, 294, 319
Fnu4HI GCNGC 3 cut(s) 123, 288, 291
FokI GGATG 2 cut(s) 74, 119
Fsp4HI GCNGC 3 cut(s) 123, 288, 291
FspBI CTAG 2 cut(s) 41, 315
GluI GCNGC 3 cut(s) 123, 288, 291
HaeIII GGCC 1 cut(s) 324
HapII CCGG 1 cut(s) 104
Hin1II CATG 3 cut(s) 221, 298, 323
HinfI GANTC 1 cut(s) 172
HpaII CCGG 1 cut(s) 104
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 241
HpyCH4V TGCA 4 cut(s) 65, 118, 158, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
Hsp92II CATG 3 cut(s) 221, 298, 323
Kzo9I GATC 2 cut(s) 269, 310
LpnPI CCDG 3 cut(s) 104, 117, 260
Lsp1109I GCAGC 3 cut(s) 134, 277, 299
LweI GCATC 1 cut(s) 52
MaeI CTAG 2 cut(s) 41, 315
MalI GATC 2 cut(s) 271, 312
MboI GATC 2 cut(s) 269, 310
MflI RGATCY 1 cut(s) 269
MnlI CCTC 2 cut(s) 140, 146
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 264
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 227
NciI CCSGG 1 cut(s) 104
NdeII GATC 2 cut(s) 269, 310
NlaIII CATG 3 cut(s) 221, 298, 323
OliI CACNNNNGTG 1 cut(s) 264
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 3 cut(s) 124, 289, 292
PspPI GGNCC 1 cut(s) 323
PsuI RGATCY 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 290
RseI CAYNNNNRTG 1 cut(s) 264
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 123, 288, 291
Sau3AI GATC 2 cut(s) 269, 310
Sau96I GGNCC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 104
SetI ASST 5 cut(s) 151, 157, 190, 268, 292
SfaNI GCATC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 264
SpeI ACTAGT 1 cut(s) 40
SspMI CTAG 2 cut(s) 41, 315
StyD4I CCNGG 1 cut(s) 102
TfiI GAWTC 1 cut(s) 172
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 1 cut(s) 63
TseI GCWGC 3 cut(s) 122, 287, 290
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 63
XspI CTAG 2 cut(s) 41, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.