FvH4_6g46100

Biogenesis of lysosome-related organelles complex 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013428
Physical Location & Seq
Forward (+)
35226158 .. 35227012
855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g46100.t1

Sequence Viewer

Length: 360 bp
ATGGCTGAGAAAGAGAAGCAAGACGAGCTCGCCGACTCTCTCAACGACCTCTTCTCCAGCGTCTCCACCATGATCAAAACCGAGCTCCAGGGAACTGCCAACCACATGGAGCTGTTAGAGAAGATGAATCTGAGAGTCGCCGAGGAATACAAAGGCTTCGGCGACGTGGCCTCCGGGCTCAGCGTCTTCGTGGAGCAGCTCAAGTCCAAAAGCAGCGGCTTCGACGAGTATGTCAAGCAGATTGATGCCATAGATCAGCAAGTCACCGAGTTTGAAGCTGTTGTTTCTGTGCTTGATAAACATGTGACCATGTTGGAGTCCAAAGTACAGTCTGTGTATCACAATCCATCGTCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0016491 GO:0031082 GO:0031083 GO:0032991 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BLOC1_2

Protein Analysis

120

Amino Acids

13.27

Weight (kDa)

4.61

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BLOC1_2 PF10046 16 - 109 2e-28 Biogenesis of lysosome-related organelles complex-1 subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49550
fragaria_vesca FvH4_6g24710 FvH4_6g46100
malus_domestica MD09G1077100.v1.1 MD17G1067500.v1.1
prunus_persica Prupe.3G247000_v2.0.a1
pyrus_communis pycom17g06780
rosa_chinensis RchiOBHm_Chr2g0164421
rosa_laevigata RLG00000021460
rosa_multiflora Rmu_sc0039370.1_g000001
rosa_roxburghii Rroxscaffold_2G00086580
rosa_rugosa Rorug02G0508400
rosa_samantha Rh2AG576500 Rh2BG587500 Rh2CG558300 Rh2DG598100
rosa_wichuraiana Rw2G047750 Rw2G047850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 230
AciI CCGC 1 cut(s) 216
AfaI GTAC 1 cut(s) 327
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 1 cut(s) 275
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 5 cut(s) 28, 85, 112, 199, 278
AluI AGCT 5 cut(s) 28, 85, 112, 199, 278
Alw21I GWGCWC 2 cut(s) 30, 87
Alw26I GTCTC 1 cut(s) 67
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 196, 213
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 256
BanII GRGCYC 3 cut(s) 30, 87, 180
BbsI GAAGAC 2 cut(s) 178, 345
Bbv12I GWGCWC 2 cut(s) 30, 87
BbvI GCAGC 2 cut(s) 208, 225
BccI CCATC 1 cut(s) 355
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 72
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 358
BisI GCNGC 3 cut(s) 197, 214, 217
BlpI GCTNAGC 1 cut(s) 179
BlsI GCNGC 3 cut(s) 198, 215, 218
Bme1390I CCNGG 2 cut(s) 89, 175
BmgBI CACGTC 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 89, 175
BmsI GCATC 1 cut(s) 235
BpiI GAAGAC 2 cut(s) 178, 345
BpmI CTGGAG 2 cut(s) 40, 71
Bpu1102I GCTNAGC 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 185
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 2 cut(s) 88, 141
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 155, 185
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 2 cut(s) 88, 141
BseMII CTCAG 2 cut(s) 122, 193
BseXI GCAGC 2 cut(s) 208, 225
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 2 cut(s) 30, 87
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 1 cut(s) 67
BsmBI CGTCTC 1 cut(s) 67
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 3 cut(s) 30, 87, 180
Bsp143I GATC 2 cut(s) 72, 253
Bsp1720I GCTNAGC 1 cut(s) 179
BspACI CCGC 1 cut(s) 216
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 2 cut(s) 123, 192
BssECI CCNNGG 2 cut(s) 88, 141
BssMI GATC 2 cut(s) 72, 253
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 330
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 3 cut(s) 6, 131, 179
BstKTI GATC 2 cut(s) 75, 256
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 72, 253
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 87, 173
BstV1I GCAGC 2 cut(s) 208, 225
BstV2I GAAGAC 2 cut(s) 178, 345
BstXI CCANNNNNNTGG 1 cut(s) 106
BsuRI GGCC 1 cut(s) 170
BtrI CACGTC 1 cut(s) 166
Cac8I GCNNGC 1 cut(s) 30
CseI GACGC 2 cut(s) 49, 172
Csp6I GTAC 1 cut(s) 326
CviAII CATG 4 cut(s) 70, 106, 302, 310
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 3 cut(s) 6, 131, 179
DpnI GATC 2 cut(s) 74, 255
DpnII GATC 2 cut(s) 72, 253
DrdI GACNNNNNNGTC 1 cut(s) 230
DseDI GACNNNNNNGTC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Ecl136II GAGCTC 2 cut(s) 28, 85
Eco24I GRGCYC 3 cut(s) 30, 87, 180
Eco53kI GAGCTC 2 cut(s) 28, 85
EcoICRI GAGCTC 2 cut(s) 28, 85
EcoRII CCWGG 1 cut(s) 87
EcoT38I GRGCYC 3 cut(s) 30, 87, 180
Esp3I CGTCTC 1 cut(s) 67
FaeI CATG 4 cut(s) 73, 109, 305, 313
FaiI YATR 6 cut(s) 71, 107, 231, 251, 303, 311
FatI CATG 4 cut(s) 69, 105, 301, 309
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 3 cut(s) 197, 214, 217
FriOI GRGCYC 3 cut(s) 30, 87, 180
Fsp4HI GCNGC 3 cut(s) 197, 214, 217
FspBI CTAG 1 cut(s) 358
GluI GCNGC 3 cut(s) 197, 214, 217
GsuI CTGGAG 2 cut(s) 40, 71
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 174
HgaI GACGC 2 cut(s) 49, 172
Hin1II CATG 4 cut(s) 73, 109, 305, 313
HinfI GANTC 4 cut(s) 35, 127, 135, 317
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 1 cut(s) 132
Hpy99I CGWCG 2 cut(s) 167, 227
HpyCH4III ACNGT 1 cut(s) 330
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpyF3I CTNAG 3 cut(s) 6, 131, 179
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 4 cut(s) 73, 109, 305, 313
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 2 cut(s) 72, 253
LmnI GCTCC 3 cut(s) 90, 109, 193
LpnPI CCDG 4 cut(s) 70, 74, 101, 187
Lsp1109I GCAGC 2 cut(s) 208, 225
LweI GCATC 1 cut(s) 235
MaeI CTAG 1 cut(s) 358
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 2 cut(s) 262, 304
MalI GATC 2 cut(s) 74, 255
MboI GATC 2 cut(s) 72, 253
MboII GAAGA 4 cut(s) 43, 133, 178, 345
MhlI GDGCHC 3 cut(s) 30, 87, 180
MlyI GAGTC 3 cut(s) 29, 144, 326
MmeI TCCRAC 1 cut(s) 294
MnlI CCTC 3 cut(s) 59, 136, 181
MspA1I CMGCKG 1 cut(s) 216
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 89, 175
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 1 cut(s) 25
NciI CCSGG 1 cut(s) 175
NdeII GATC 2 cut(s) 72, 253
NlaIII CATG 4 cut(s) 73, 109, 305, 313
NmeAIII GCCGAG 1 cut(s) 166
NmuCI GTSAC 2 cut(s) 262, 304
NspI RCATGY 1 cut(s) 305
PciI ACATGT 1 cut(s) 301
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 3 cut(s) 198, 215, 218
PleI GAGTC 3 cut(s) 29, 143, 325
PpsI GAGTC 3 cut(s) 29, 143, 325
PscI ACATGT 1 cut(s) 301
Psp124BI GAGCTC 2 cut(s) 30, 87
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
SacI GAGCTC 2 cut(s) 30, 87
SatI GCNGC 3 cut(s) 197, 214, 217
Sau3AI GATC 2 cut(s) 72, 253
SchI GAGTC 3 cut(s) 29, 144, 326
ScrFI CCNGG 2 cut(s) 89, 175
SduI GDGCHC 3 cut(s) 30, 87, 180
SetI ASST 7 cut(s) 30, 51, 87, 114, 168, 201, 280
SfaNI GCATC 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 358
SstI GAGCTC 2 cut(s) 30, 87
StyD4I CCNGG 2 cut(s) 87, 173
TaaI ACNGT 1 cut(s) 330
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 222
TatI WGTACW 1 cut(s) 325
TauI GCSGC 1 cut(s) 219
TfiI GAWTC 1 cut(s) 127
TseFI GTSAC 2 cut(s) 262, 304
TseI GCWGC 2 cut(s) 196, 213
Tsp45I GTSAC 2 cut(s) 262, 304
TspDTI ATGAA 1 cut(s) 140
XceI RCATGY 1 cut(s) 305
XspI CTAG 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.