Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039370.1

Orthogroup ID

OG0013428

Physical Location & Seq

Genomic Coordinates Forward (+)

311 .. 751

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039370.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atggctgcaaaagacgagctcgccgagtctctcaatgacctcttcaccagcgtctccaccatggtcaaatcggagctccagggaacgaccaaccacatggagctcttagagaagatgaatatgagagtcgccgaggaatacaaaggcttcggcgacgtggcctccgggctaagcgttttcgtggagcagctcaggtccaaaaccggcagcttcgacgagtatgtgaagcagattgatttcatagaccagcaagtcaccgaattcgaagctgtggtttcagtgcttgatcgatatgtggccatgttagagtccaaggtccaatctgtgtatcaaaatccatcgtcttcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0016491 GO:0031082 GO:0031083 GO:0032991 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BLOC1_2

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

4.46

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49550
fragaria_vesca	FvH4_6g24710 FvH4_6g46100
malus_domestica	MD09G1077100.v1.1 MD17G1067500.v1.1
prunus_persica	Prupe.3G247000_v2.0.a1
pyrus_communis	pycom17g06780
rosa_chinensis	RchiOBHm_Chr2g0164421
rosa_laevigata	RLG00000021460
rosa_multiflora	Rmu_sc0039370.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086580
rosa_rugosa	Rorug02G0508400
rosa_samantha	Rh2AG576500 Rh2BG587500 Rh2CG558300 Rh2DG598100
rosa_wichuraiana	Rw2G047750 Rw2G047850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	260
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	6 cut(s)	19, 76, 103, 190, 210, 269
AluI	AGCT	6 cut(s)	19, 76, 103, 190, 210, 269
Alw21I	GWGCWC	3 cut(s)	21, 78, 105
Alw26I	GTCTC	2 cut(s)	33, 58
AoxI	GGCC	2 cut(s)	159, 297
ApeKI	GCWGC	3 cut(s)	5, 187, 207
ApoI	RAATTY	1 cut(s)	260
AspS9I	GGNCC	2 cut(s)	195, 316
AsuC2I	CCSGG	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	37, 247
AsuII	TTCGAA	1 cut(s)	264
AvaII	GGWCC	2 cut(s)	195, 316
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	3 cut(s)	21, 78, 105
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	3 cut(s)	21, 78, 105
BbvI	GCAGC	2 cut(s)	199, 219
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	166
BcoDI	GTCTC	2 cut(s)	33, 58
BisI	GCNGC	3 cut(s)	6, 188, 208
BlpI	GCTNAGC	1 cut(s)	170
BlsI	GCNGC	3 cut(s)	7, 189, 209
Bme1390I	CCNGG	2 cut(s)	80, 166
Bme18I	GGWCC	2 cut(s)	195, 316
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	195, 316
BmrFI	CCNGG	2 cut(s)	80, 166
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu1102I	GCTNAGC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	166
Bsa29I	ATCGAT	1 cut(s)	289
BsaJI	CCNNGG	4 cut(s)	60, 79, 132, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	146, 176
Bse118I	RCCGGY	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	289
BseDI	CCNNGG	4 cut(s)	60, 79, 132, 312
BseMII	CTCAG	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	199, 219
BshFI	GGCC	2 cut(s)	161, 299
BshVI	ATCGAT	1 cut(s)	289
BsiHKAI	GWGCWC	3 cut(s)	21, 78, 105
BsiSI	CCGG	2 cut(s)	165, 204
BsmAI	GTCTC	2 cut(s)	33, 58
BsmBI	CGTCTC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	161, 299
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	3 cut(s)	21, 78, 105
Bsp143I	GATC	1 cut(s)	286
Bsp1720I	GCTNAGC	1 cut(s)	170
Bsp19I	CCATGG	1 cut(s)	60
BspANI	GGCC	2 cut(s)	161, 299
BspCNI	CTCAG	1 cut(s)	204
BspDI	ATCGAT	1 cut(s)	289
BspT104I	TTCGAA	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	203
BssAI	RCCGGY	1 cut(s)	203
BssECI	CCNNGG	4 cut(s)	60, 79, 132, 312
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	2 cut(s)	60, 312
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	47
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	4 cut(s)	106, 170, 191, 348
BstDSI	CCRYGG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	2 cut(s)	33, 58
BstMBI	GATC	1 cut(s)	286
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	78, 164
BstV1I	GCAGC	2 cut(s)	199, 219
BstV2I	GAAGAC	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	97
Bsu15I	ATCGAT	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	161, 299
BsuTUI	ATCGAT	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	60
BtrI	CACGTC	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	285
Cac8I	GCNNGC	1 cut(s)	21
Cfr10I	RCCGGY	1 cut(s)	203
Cfr13I	GGNCC	2 cut(s)	195, 316
ClaI	ATCGAT	1 cut(s)	289
CseI	GACGC	1 cut(s)	40
CviAII	CATG	3 cut(s)	61, 97, 301
DdeI	CTNAG	4 cut(s)	106, 170, 191, 348
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	3 cut(s)	19, 76, 103
Eco130I	CCWWGG	2 cut(s)	60, 312
Eco24I	GRGCYC	3 cut(s)	21, 78, 105
Eco47I	GGWCC	2 cut(s)	195, 316
Eco53kI	GAGCTC	3 cut(s)	19, 76, 103
EcoICRI	GAGCTC	3 cut(s)	19, 76, 103
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	60, 312
EcoT38I	GRGCYC	3 cut(s)	21, 78, 105
ErhI	CCWWGG	2 cut(s)	60, 312
Esp3I	CGTCTC	1 cut(s)	58
FaeI	CATG	3 cut(s)	64, 100, 304
FaiI	YATR	7 cut(s)	62, 98, 122, 222, 242, 294, 302
FatI	CATG	3 cut(s)	60, 96, 300
Fnu4HI	GCNGC	3 cut(s)	6, 188, 208
FriOI	GRGCYC	3 cut(s)	21, 78, 105
Fsp4HI	GCNGC	3 cut(s)	6, 188, 208
GluI	GCNGC	3 cut(s)	6, 188, 208
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	161, 299
HapII	CCGG	2 cut(s)	165, 204
HgaI	GACGC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	64, 100, 304
HinfI	GANTC	3 cut(s)	26, 126, 308
HpaII	CCGG	2 cut(s)	165, 204
HphI	GGTGA	2 cut(s)	37, 247
Hpy188I	TCNGA	1 cut(s)	73
Hpy99I	CGWCG	2 cut(s)	158, 218
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	1 cut(s)	8
HpyF3I	CTNAG	4 cut(s)	106, 170, 191, 348
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	3 cut(s)	64, 100, 304
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	4 cut(s)	73, 81, 100, 184
LpnPI	CCDG	7 cut(s)	61, 65, 92, 178, 178, 217, 260
Lsp1109I	GCAGC	2 cut(s)	199, 219
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	3 cut(s)	34, 124, 336
MhlI	GDGCHC	3 cut(s)	21, 78, 105
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	1 cut(s)	260
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	3 cut(s)	35, 135, 317
MnlI	CCTC	3 cut(s)	50, 127, 172
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	2 cut(s)	165, 204
MspR9I	CCNGG	2 cut(s)	80, 166
MvaI	CCWGG	1 cut(s)	80
NciI	CCSGG	1 cut(s)	166
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	64, 100, 304
NmeAIII	GCCGAG	2 cut(s)	49, 157
NmuCI	GTSAC	1 cut(s)	253
NspV	TTCGAA	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PkrI	GCNGC	3 cut(s)	7, 189, 209
PleI	GAGTC	3 cut(s)	34, 134, 316
PpsI	GAGTC	3 cut(s)	34, 134, 316
Psp124BI	GAGCTC	3 cut(s)	21, 78, 105
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	2 cut(s)	195, 316
SacI	GAGCTC	3 cut(s)	21, 78, 105
SatI	GCNGC	3 cut(s)	6, 188, 208
Sau3AI	GATC	1 cut(s)	286
Sau96I	GGNCC	2 cut(s)	195, 316
SchI	GAGTC	3 cut(s)	35, 135, 317
ScrFI	CCNGG	2 cut(s)	80, 166
SduI	GDGCHC	3 cut(s)	21, 78, 105
SfuI	TTCGAA	1 cut(s)	264
SinI	GGWCC	2 cut(s)	195, 316
Sse9I	AATT	1 cut(s)	260
SstI	GAGCTC	3 cut(s)	21, 78, 105
StyD4I	CCNGG	2 cut(s)	78, 164
StyI	CCWWGG	2 cut(s)	60, 312
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	213, 264, 289
TasI	AATT	1 cut(s)	260
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	3 cut(s)	5, 187, 207
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	2 cut(s)	131, 229
TspRI	CASTG	1 cut(s)	285
VpaK11BI	GGWCC	2 cut(s)	195, 316
XapI	RAATTY	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.