pycom17g06780

Biogenesis of lysosome-related organelles complex 1 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0013428
Physical Location & Seq
Reverse (-)
4906324 .. 4906692
369 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g06780.1

Sequence Viewer

Length: 369 bp
ATGGCTGCTGCTGCGAAGGAAGAGCAAAAAGACGCGCTCGCCGAGTCCATCAACGATCTCTTCGGCAGCGTCTCCGCCGTGGTTAAATCAGAGCTCCAGGGATCGACCAACCACCTCGATCTTCTCGAAAAGATGAACATGCGAGTGGCCGAAGAGTACAAGGGCTTCGGCGACGTGGCGGCGGGGCTGAGCGTGTTCGTGGAGCAGCTCAAGGCCAAGAGCGGCAGCTTCGACGAGTACGTGAAGCAGATCGACGTCATCGAGCAGCAGGTGACGGAGTTCGAGGCGGTTGTTTCGGTGCTCGATAGATACGCGTCGATGTTGGAGTCCAAAGTTGAATCTGTTTATCAGAATCCATCGGCTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0016491 GO:0031082 GO:0031083 GO:0032991 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BLOC1_2

Protein Analysis

123

Amino Acids

13.31

Weight (kDa)

4.46

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BLOC1_2 PF10046 19 - 112 6.3e-29 Biogenesis of lysosome-related organelles complex-1 subunit 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013428)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49550
fragaria_vesca FvH4_6g24710 FvH4_6g46100
malus_domestica MD09G1077100.v1.1 MD17G1067500.v1.1
prunus_persica Prupe.3G247000_v2.0.a1
pyrus_communis pycom17g06780
rosa_chinensis RchiOBHm_Chr2g0164421
rosa_laevigata RLG00000021460
rosa_multiflora Rmu_sc0039370.1_g000001
rosa_roxburghii Rroxscaffold_2G00086580
rosa_rugosa Rorug02G0508400
rosa_samantha Rh2AG576500 Rh2BG587500 Rh2CG558300 Rh2DG598100
rosa_wichuraiana Rw2G047750 Rw2G047850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 259
AatII GACGTC 1 cut(s) 258
Acc36I ACCTGC 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 222
AccII CGCG 2 cut(s) 35, 314
AciI CCGC 5 cut(s) 75, 179, 182, 222, 287
AclWI GGATC 1 cut(s) 109
AcoI YGGCCR 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 158, 239
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 1 cut(s) 338
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 3 cut(s) 94, 208, 228
AluI AGCT 3 cut(s) 94, 208, 228
Alw21I GWGCWC 2 cut(s) 96, 303
Alw26I GTCTC 1 cut(s) 76
AlwI GGATC 1 cut(s) 109
AoxI GGCC 2 cut(s) 147, 213
ApeKI GCWGC 7 cut(s) 5, 8, 11, 66, 205, 225, 265
AspLEI GCGC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 283
BanII GRGCYC 1 cut(s) 96
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
Bbv12I GWGCWC 2 cut(s) 96, 303
BbvI GCAGC 4 cut(s) 78, 217, 237, 277
BccI CCATC 2 cut(s) 56, 364
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 76
BfuAI ACCTGC 1 cut(s) 259
BisI GCNGC 9 cut(s) 6, 9, 12, 67, 180, 206, 223, 226, 266
BlpI GCTNAGC 1 cut(s) 188
BlsI GCNGC 9 cut(s) 7, 10, 13, 68, 181, 207, 224, 227, 267
Bme1390I CCNGG 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 80
Bpu1102I GCTNAGC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 194
BsaAI YACGTR 1 cut(s) 241
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 78, 97
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 78, 97
BseMII CTCAG 1 cut(s) 179
BseXI GCAGC 4 cut(s) 78, 217, 237, 277
Bsh1236I CGCG 2 cut(s) 35, 314
BshFI GGCC 2 cut(s) 149, 215
BsiHKAI GWGCWC 2 cut(s) 96, 303
BsmAI GTCTC 1 cut(s) 76
BsmBI CGTCTC 1 cut(s) 76
BsnI GGCC 2 cut(s) 149, 215
Bsp1286I GDGCHC 2 cut(s) 96, 303
Bsp143I GATC 4 cut(s) 55, 101, 118, 249
Bsp1720I GCTNAGC 1 cut(s) 188
BspACI CCGC 5 cut(s) 75, 179, 182, 222, 287
BspANI GGCC 2 cut(s) 149, 215
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 2 cut(s) 35, 314
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 1 cut(s) 109
BspQI GCTCTTC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 78, 97
BssMI GATC 4 cut(s) 55, 101, 118, 249
BssNI GRCGYC 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 98
Bst6I CTCTTC 3 cut(s) 15, 65, 147
BstACI GRCGYC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 78
BstFNI CGCG 2 cut(s) 35, 314
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 4 cut(s) 58, 104, 121, 252
BstMAI GTCTC 1 cut(s) 76
BstMBI GATC 4 cut(s) 55, 101, 118, 249
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 96
BstUI CGCG 2 cut(s) 35, 314
BstV1I GCAGC 4 cut(s) 78, 217, 237, 277
BsuRI GGCC 2 cut(s) 149, 215
BtgI CCRYGG 1 cut(s) 78
BtrI CACGTC 1 cut(s) 175
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 37
CseI GACGC 3 cut(s) 41, 58, 303
Csp6I GTAC 2 cut(s) 157, 238
CviAII CATG 1 cut(s) 139
CviJI RGCY 9 cut(s) 5, 94, 149, 165, 187, 208, 215, 228, 362
CviKI_1 RGCY 9 cut(s) 5, 94, 149, 165, 187, 208, 215, 228, 362
CviQI GTAC 2 cut(s) 157, 238
DdeI CTNAG 1 cut(s) 188
DpnI GATC 4 cut(s) 57, 103, 120, 251
DpnII GATC 4 cut(s) 55, 101, 118, 249
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 3 cut(s) 15, 65, 147
EarI CTCTTC 3 cut(s) 15, 65, 147
EciI GGCGGA 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 94
Eco24I GRGCYC 1 cut(s) 96
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 76
FaeI CATG 1 cut(s) 142
FaiI YATR 1 cut(s) 140
FatI CATG 1 cut(s) 138
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 9 cut(s) 6, 9, 12, 67, 180, 206, 223, 226, 266
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 9 cut(s) 6, 9, 12, 67, 180, 206, 223, 226, 266
GlaI GCGC 1 cut(s) 36
GluI GCNGC 9 cut(s) 6, 9, 12, 67, 180, 206, 223, 226, 266
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 2 cut(s) 149, 215
HgaI GACGC 3 cut(s) 41, 58, 303
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 1 cut(s) 142
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 4 cut(s) 44, 326, 338, 352
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 2 cut(s) 91, 351
Hpy188III TCNNGA 2 cut(s) 125, 366
Hpy99I CGWCG 4 cut(s) 176, 236, 257, 319
HpyAV CCTTC 1 cut(s) 10
HpyCH4IV ACGT 3 cut(s) 174, 240, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 3 cut(s) 174, 240, 255
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 1 cut(s) 142
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 4 cut(s) 55, 101, 118, 249
LguI GCTCTTC 1 cut(s) 15
LmnI GCTCC 2 cut(s) 99, 202
LpnPI CCDG 3 cut(s) 83, 110, 254
Lsp1109I GCAGC 4 cut(s) 78, 217, 237, 277
MaeII ACGT 3 cut(s) 174, 240, 255
MaeIII GTNAC 1 cut(s) 271
MalI GATC 4 cut(s) 57, 103, 120, 251
MbiI CCGCTC 1 cut(s) 222
MboI GATC 4 cut(s) 55, 101, 118, 249
MboII GAAGA 4 cut(s) 32, 52, 113, 164
MhlI GDGCHC 2 cut(s) 96, 303
MluI ACGCGT 1 cut(s) 312
MlyI GAGTC 2 cut(s) 53, 335
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 2 cut(s) 125, 277
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 98
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 2 cut(s) 35, 314
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 4 cut(s) 55, 101, 118, 249
NlaIII CATG 1 cut(s) 142
NmeAIII GCCGAG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 271
NspI RCATGY 1 cut(s) 142
PaqCI CACCTGC 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 15
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 123, 237, 258
PfeI GAWTC 2 cut(s) 338, 352
PkrI GCNGC 9 cut(s) 7, 10, 13, 68, 181, 207, 224, 227, 267
PleI GAGTC 2 cut(s) 52, 334
PpsI GAGTC 2 cut(s) 52, 334
Ppu21I YACGTR 1 cut(s) 241
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
RsaI GTAC 2 cut(s) 158, 239
RsaNI GTAC 2 cut(s) 157, 238
RseI CAYNNNNRTG 1 cut(s) 143
SacI GAGCTC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 9 cut(s) 6, 9, 12, 67, 180, 206, 223, 226, 266
Sau3AI GATC 4 cut(s) 55, 101, 118, 249
SchI GAGTC 2 cut(s) 53, 335
ScrFI CCNGG 1 cut(s) 98
SduI GDGCHC 2 cut(s) 96, 303
SetI ASST 8 cut(s) 96, 117, 177, 210, 230, 243, 258, 273
SmiMI CAYNNNNRTG 1 cut(s) 143
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SsiI CCGC 5 cut(s) 75, 179, 182, 222, 287
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 96
TaiI ACGT 3 cut(s) 177, 243, 258
TaqI TCGA 9 cut(s) 104, 117, 126, 231, 252, 261, 282, 303, 317
TatI WGTACW 1 cut(s) 156
TauI GCSGC 2 cut(s) 182, 225
TfiI GAWTC 2 cut(s) 338, 352
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 7 cut(s) 5, 8, 11, 66, 205, 225, 265
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 290
XceI RCATGY 1 cut(s) 142
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.