Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014171

Physical Location & Seq

Genomic Coordinates Reverse (-)

20166891 .. 20169923

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49665.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2223 bp

ATGGGTACTGGTTGGCGACGAGCCTTTTGCACCACCGCCCCTAGAAACAGCGATGCCGCGGCGCCGGATCTCGACAAGCAACGCACCGGCTATAATCTTACCCCAAGTCCTAGCCCAAGAAGCTGCGTTAAGCTAGCTTTTCTATCCGGAGGAAGTAATCCTTCAACTCCCCGATCAACTTCTAGTCCTAGCCTACGTTGTCGGACTGCAGATGCTCAAACTCCCACGGCGGAACAAACTTCGACGCCAAGATCGGCGACTAAGAGTCCAAGACTGTCTTTGGCCGCTATCTCTAACCCTTCTTCGCCTCGGTCACCGTTAAAACTCTCTCTGTTTCGCAACAGCTTCAAATTCAGAAGTACTTGTGGAATATGTTTGAACAGTGTGAAAACAGGGCAAGGAACGGCGAAGTATACGGCCGAGTGTTCACACGCATTTCATTTCCCTTGTATTGCCGACTATGTTCGTAAACAGGGCAAGCTTGTTTGTCCTGTTTGTAATTCCATCTGGAAAGACGCTTCTCTCCTTGTTCCTCATAAGAATGCAACTGAATCTCCCCTGGACGACTCTGTTTCCGTAATCCAGGAGAAGCGCGTTGTTGTCACGTCTTCTCCCAGAGCAAAACCAAGGCCAAAGCAGAGTGATTATTCGAGATTTTACGACGATGATGAGCCTTTGCTTTCGCCGAGGTTTGTCACTATACCTGAAGCTGATGAGAATTGTGGAGGGGAAGAGGAGGATGACGTGCCTCAGTTCAAGGGATTTGTGGTGGATCCGAACCCTTCTTTTGCTGTCAAAACTAATGAGATTCCGGTCAATGGTCGAGATTTTGGAAACGTTCAGGTGAGTTTGTTGCCTGAAGCGGCGGTTGTCTCTGTTGGGTGTGGTTACGAGACTCGTGCAGTGGCTTTGCGGGTGAAGGCGCCACCACCTCTAACAGCAAGAGGCGGTGTAGGGCGTAGGCTTTTAGATCCGTCGCAGCGTGCACCGGTGGACTTGGTGGTTGTAGTTGACGTAGGTGGAACAATGAACGGTGCGAAACTACAAATGGTCAAACGAGCCATGAGGCTTGTGATCTCCTCGCTTGGCTCAGCTGATCGGCTATCTATCGTTGCCGTCGTCATGACGGTTCCCAAGAGACTCCTTCCGCTGAAGAGAATGACCGAACACGGCAAACGCTCTGCTGGAGCCGTGGTAGATGGGTTGCTTTGTGGTCAAGGTTCTAACACAAGTGAGGCATTAAAAAAAGCATCAAGAGTGCTTGAAGATCGTAGGGAGAGAAACCCGGTGGCTAGCATCGTACTCCTAACGGACGGTCAGGGCCAGTTGAGTAAAGTCCACACAAATCAACGGTCAACAATAACTAACGTGGGATCAACACGTTTTGCTCACATTGAGATCCCTGTTACTGAGCATGGCTTCGGAGAAAGCGGTGGATGTAGTAACGCCCCTGCAGAGGAAGCTTTTGCAAAATGCATAGGAGGATTGCTTAGCGTAGTGGTTCAAGATCTCAGGATCCAAATCCGGGTTGGATCAGGATCTGGACCATGTGAAATCTCAGCCATTTATCTATGTAATGGACGGCCTACTTTGGTTAGTTCCGGTTCCGGGTCAGTCCGGCTTGGGGACCTCTACGCAGGAGAGGAAAGAGAGCTTCTAGTTGAGCTTAGGGTCCCGTCAACCGCCACTAGGGCCTACCAGATTTTGTCAGTTAGAGGTCTCTTTAAGGACCCATCGACACAAGAAGTTGTATATGGACGAGACCAATCTCTCCGCGTTCCTCAAGCCGTTCGATCATCTTCTTCTCCTAGAATCGAACGGCTTAGAAGCCTCTTTATAGCGACTCGGGCTGTTGCCGAGTCGCGGAGGCTAGTGGAATACGGAGAATGCACAAGCGCATACCACTTGCTAACATCAGCGCGTGCGTTGCTTGGCCAGTCGGGAACGGTGGAAGCGGCTGAGTACATAAAGGTCGTGGAGGCAGAGCTGGTGGAAGTTCAATGGAGAGGACAACAACTAATGGAGTATCAAAGTCAGCACCAGCAGCAACATAATCAACGGCGGAGAGGAAGCGAGAGAGAGACCACGACGACGATGACGTTGATGGATGAAAACGGTGAGCCGTTGACTCCAGCATCAGCGTGGAGAGCGGCTGAGAAACTGGCTAAGTTAGCTATGATGAAGAAGAGCGACTTGCACGGCTTCGAAAACGCTAGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022622 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0071944 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VWA_2 zf-RING_11 zf-RING_2

Protein Analysis

740

Amino Acids

80.24

Weight (kDa)

9.34

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	121 - 167	5.3e-09	Ring finger domain
zf-RING_11	PF17123	122 - 151	2.5e-08	RING-like zinc finger
zf-rbx1	PF12678	122 - 167	2.1e-06	RING-H2 zinc finger domain
zf-C3HC4	PF00097	122 - 166	3.5e-06	Zinc finger, C3HC4 type (RING finger)
VWA	PF00092	332 - 445	8.4e-09	von Willebrand factor type A domain
VWA_3	PF13768	332 - 442	1.6e-08	von Willebrand factor type A domain
VWA_2	PF13519	333 - 440	8.5e-15	von Willebrand factor type A domain
WAV3_C	PF25243	602 - 674	4.4e-29	E3 ubiquitin-protein ligase WAV3-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49665
fragaria_vesca	FvH4_5g33780 FvH4_5g33780
malus_domestica	MD08G1207200.v1.1 MD15G1391600.v1.1
prunus_persica	Prupe.1G540900_v2.0.a1
pyrus_communis	pycom08g17950
rosa_chinensis	RchiOBHm_Chr7g0233091
rosa_laevigata	RLG00000001300
rosa_multiflora	Rmu_sc0016344.1_g000006
rosa_roxburghii	Rroxscaffold_3G00227690
rosa_rugosa	Rorug07G0278100
rosa_samantha	Rh7AG433300 Rh7BG406100 Rh7CG452700 Rh7DG421900
rosa_wichuraiana	Rw7G035730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	61, 922
AccBSI	CCGCTC	1 cut(s)	2150
AccI	GTMKAC	1 cut(s)	413
AccII	CGCG	5 cut(s)	59, 594, 1776, 1864, 1921
AccIII	TCCGGA	1 cut(s)	146
AclI	AACGTT	1 cut(s)	837
AcoI	YGGCCR	3 cut(s)	282, 417, 1933
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	3 cut(s)	726, 879, 1172
AcyI	GRCGYC	3 cut(s)	62, 245, 923
AfaI	GTAC	4 cut(s)	7, 361, 1302, 1964
AfiI	CCNNNNNNNGG	7 cut(s)	818, 1456, 1525, 1608, 1624, 1689, 1863
AflIII	ACRYGT	1 cut(s)	1379
AgeI	ACCGGT	1 cut(s)	988
AgsI	TTSAA	7 cut(s)	165, 349, 379, 757, 1265, 1505, 2000
AhdI	GACNNNNNGTC	1 cut(s)	264
AjiI	CACGTC	2 cut(s)	606, 745
AjnI	CCWGG	2 cut(s)	558, 582
Alw21I	GWGCWC	1 cut(s)	988
Alw26I	GTCTC	6 cut(s)	877, 887, 1132, 1724, 1755, 2075
Alw44I	GTGCAC	1 cut(s)	984
AlwNI	CAGNNNCTG	1 cut(s)	1541
Ama87I	CYCGRG	1 cut(s)	1845
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	7 cut(s)	282, 417, 629, 1321, 1583, 1692, 1933
ApaLI	GTGCAC	1 cut(s)	984
ApeKI	GCWGC	3 cut(s)	123, 979, 2044
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	4 cut(s)	9, 41, 1337, 1369
AsiGI	ACCGGT	1 cut(s)	988
AspLEI	GCGC	5 cut(s)	64, 594, 925, 1898, 1921
AspS9I	GGNCC	6 cut(s)	1321, 1544, 1627, 1672, 1692, 1729
AsuC2I	CCSGG	3 cut(s)	1286, 1526, 1609
AsuHPI	GGTGA	4 cut(s)	306, 856, 928, 2129
AsuII	TTCGAA	1 cut(s)	2205
AsuNHI	GCTAGC	2 cut(s)	133, 1292
AvaI	CYCGRG	1 cut(s)	1845
AvaII	GGWCC	4 cut(s)	1544, 1627, 1672, 1729
BaeGI	GKGCMC	1 cut(s)	988
BalI	TGGCCA	1 cut(s)	1935
BamHI	GGATCC	2 cut(s)	772, 1515
BanI	GGYRCC	2 cut(s)	61, 922
BauI	CACGAG	1 cut(s)	897
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	1 cut(s)	988
BbvI	GCAGC	3 cut(s)	110, 991, 2056
BccI	CCATC	4 cut(s)	512, 1193, 1741, 2098
BcgI	CGANNNNNNTGC	4 cut(s)	9, 43, 881, 915
BciT130I	CCWGG	2 cut(s)	560, 584
BcnI	CCSGG	3 cut(s)	1286, 1526, 1609
BcoDI	GTCTC	6 cut(s)	877, 887, 1132, 1724, 1755, 2075
BfmI	CTRYAG	2 cut(s)	207, 1452
BfoI	RGCGCY	2 cut(s)	65, 926
BglI	GCCNNNNNGGC	1 cut(s)	1691
BglII	AGATCT	1 cut(s)	1507
BisI	GCNGC	9 cut(s)	57, 60, 124, 285, 864, 980, 1956, 2045, 2151
BlpI	GCTNAGC	2 cut(s)	1090, 1490
BlsI	GCNGC	9 cut(s)	58, 61, 125, 286, 865, 981, 1957, 2046, 2152
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	5 cut(s)	560, 584, 1286, 1526, 1609
Bme18I	GGWCC	4 cut(s)	1544, 1627, 1672, 1729
BmeRI	GACNNNNNGTC	1 cut(s)	264
BmeT110I	CYCGRG	1 cut(s)	1845
BmgBI	CACGTC	2 cut(s)	606, 745
BmgT120I	GGNCC	6 cut(s)	1321, 1544, 1627, 1672, 1692, 1729
BmrFI	CCNGG	5 cut(s)	560, 584, 1286, 1526, 1609
BmsI	GCATC	5 cut(s)	43, 202, 1259, 1305, 2144
BmtI	GCTAGC	2 cut(s)	137, 1296
BpiI	GAAGAC	1 cut(s)	600
BpmI	CTGGAG	2 cut(s)	1206, 2115
Bpu10I	CCTNAGC	1 cut(s)	1667
Bpu1102I	GCTNAGC	2 cut(s)	1090, 1490
Bpu14I	TTCGAA	1 cut(s)	2205
BpuEI	CTTGAG	1 cut(s)	1767
BpuMI	CCSGG	3 cut(s)	1286, 1526, 1609
BsaBI	GATNNNNATC	2 cut(s)	1520, 1537
BsaHI	GRCGYC	3 cut(s)	62, 245, 923
BsaI	GGTCTC	3 cut(s)	1724, 1755, 2075
BsaJI	CCNNGG	7 cut(s)	57, 225, 308, 558, 626, 686, 1191
BsaWI	WCCGGW	4 cut(s)	146, 811, 988, 1601
BsaXI	ACNNNNNCTCC	6 cut(s)	538, 568, 595, 625, 1179, 1209
Bsc4I	CCNNNNNNNGG	7 cut(s)	818, 1456, 1525, 1608, 1624, 1689, 1863
Bse118I	RCCGGY	2 cut(s)	86, 988
Bse1I	ACTGG	4 cut(s)	13, 1324, 1936, 2166
Bse8I	GATNNNNATC	2 cut(s)	1520, 1537
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	2 cut(s)	560, 584
BseDI	CCNNGG	7 cut(s)	57, 225, 308, 558, 626, 686, 1191
BseGI	GGATG	3 cut(s)	745, 1442, 2113
BseJI	GATNNNNATC	2 cut(s)	1520, 1537
BseLI	CCNNNNNNNGG	7 cut(s)	818, 1456, 1525, 1608, 1624, 1689, 1863
BseMII	CTCAG	7 cut(s)	764, 1104, 1401, 1525, 1572, 1950, 2145
BseNI	ACTGG	4 cut(s)	13, 1324, 1936, 2166
BseRI	GAGGAG	2 cut(s)	749, 1069
BseSI	GKGCMC	1 cut(s)	988
BseX3I	CGGCCG	1 cut(s)	417
BseXI	GCAGC	3 cut(s)	110, 991, 2056
BsgI	GTGCAG	1 cut(s)	921
Bsh1236I	CGCG	5 cut(s)	59, 594, 1776, 1864, 1921
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	7 cut(s)	284, 419, 631, 1323, 1585, 1694, 1935
BshNI	GGYRCC	2 cut(s)	61, 922
BshTI	ACCGGT	1 cut(s)	988
BsiEI	CGRYCG	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	988
BsiHKCI	CYCGRG	1 cut(s)	1845
BslFI	GGGAC	2 cut(s)	1640, 1658
BslI	CCNNNNNNNGG	7 cut(s)	818, 1456, 1525, 1608, 1624, 1689, 1863
BsmAI	GTCTC	6 cut(s)	877, 887, 1132, 1724, 1755, 2075
BsmFI	GGGAC	2 cut(s)	1640, 1658
BsmI	GAATGC	2 cut(s)	547, 1892
BsnI	GGCC	7 cut(s)	284, 419, 631, 1323, 1585, 1694, 1935
Bso31I	GGTCTC	3 cut(s)	1724, 1755, 2075
BsoBI	CYCGRG	1 cut(s)	1845
Bsp119I	TTCGAA	1 cut(s)	2205
Bsp1286I	GDGCHC	1 cut(s)	988
Bsp13I	TCCGGA	1 cut(s)	146
Bsp1720I	GCTNAGC	2 cut(s)	1090, 1490
BspANI	GGCC	7 cut(s)	284, 419, 631, 1323, 1585, 1694, 1935
BspCNI	CTCAG	7 cut(s)	763, 1103, 1402, 1524, 1571, 1951, 2146
BspEI	TCCGGA	1 cut(s)	146
BspFNI	CGCG	5 cut(s)	59, 594, 1776, 1864, 1921
BspHI	TCATGA	1 cut(s)	1122
BspMAI	CTGCAG	2 cut(s)	211, 1456
BspOI	GCTAGC	2 cut(s)	137, 1296
BspQI	GCTCTTC	1 cut(s)	2180
BspT104I	TTCGAA	1 cut(s)	2205
BspT107I	GGYRCC	2 cut(s)	61, 922
BspTNI	GGTCTC	3 cut(s)	1724, 1755, 2075
BsrBI	CCGCTC	1 cut(s)	2150
BsrFI	RCCGGY	2 cut(s)	86, 988
BsrI	ACTGG	4 cut(s)	13, 1324, 1936, 2166
BssAI	RCCGGY	2 cut(s)	86, 988
BssECI	CCNNGG	7 cut(s)	57, 225, 308, 558, 626, 686, 1191
BssNAI	GTATAC	1 cut(s)	414
BssNI	GRCGYC	3 cut(s)	62, 245, 923
BssSI	CACGAG	1 cut(s)	897
BssT1I	CCWWGG	1 cut(s)	626
Bst1107I	GTATAC	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	897
Bst2UI	CCWGG	2 cut(s)	560, 584
Bst4CI	ACNGT	9 cut(s)	276, 318, 383, 1034, 1129, 1316, 1353, 1948, 2117
Bst6I	CTCTTC	3 cut(s)	726, 1148, 2180
BstACI	GRCGYC	3 cut(s)	62, 245, 923
BstBI	TTCGAA	1 cut(s)	2205
BstC8I	GCNNGC	5 cut(s)	135, 479, 984, 1294, 1923
BstDSI	CCRYGG	3 cut(s)	57, 225, 1191
BstEII	GGTNACC	1 cut(s)	312
BstF5I	GGATG	3 cut(s)	745, 1442, 2113
BstFNI	CGCG	5 cut(s)	59, 594, 1776, 1864, 1921
BstH2I	RGCGCY	2 cut(s)	65, 926
BstHHI	GCGC	5 cut(s)	64, 594, 925, 1898, 1921
BstMAI	GTCTC	6 cut(s)	877, 887, 1132, 1724, 1755, 2075
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	8 cut(s)	120, 1460, 1691, 1847, 1927, 2044, 2147, 2171
BstNI	CCWGG	2 cut(s)	560, 584
BstPI	GGTNACC	1 cut(s)	312
BstSCI	CCNGG	5 cut(s)	558, 582, 1284, 1524, 1607
BstSFI	CTRYAG	2 cut(s)	207, 1452
BstSLI	GKGCMC	1 cut(s)	988
BstUI	CGCG	5 cut(s)	59, 594, 1776, 1864, 1921
BstV1I	GCAGC	3 cut(s)	110, 991, 2056
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	7 cut(s)	67, 772, 970, 1398, 1507, 1515, 1538
BstYI	RGATCY	7 cut(s)	67, 772, 970, 1398, 1507, 1515, 1538
BstZ17I	GTATAC	1 cut(s)	414
BstZI	CGGCCG	1 cut(s)	417
BsuRI	GGCC	7 cut(s)	284, 419, 631, 1323, 1585, 1694, 1935
BtgI	CCRYGG	3 cut(s)	57, 225, 1191
BtgZI	GCGATG	1 cut(s)	66
BtrI	CACGTC	2 cut(s)	606, 745
BtsCI	GGATG	3 cut(s)	745, 1442, 2113
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	2 cut(s)	388, 909
Cac8I	GCNNGC	5 cut(s)	135, 479, 984, 1294, 1923
CaiI	CAGNNNCTG	1 cut(s)	1541
CciI	TCATGA	1 cut(s)	1122
CfoI	GCGC	5 cut(s)	64, 594, 925, 1898, 1921
Cfr10I	RCCGGY	2 cut(s)	86, 988
Cfr13I	GGNCC	6 cut(s)	1321, 1544, 1627, 1672, 1692, 1729
Cfr42I	CCGCGG	1 cut(s)	60
CseI	GACGC	2 cut(s)	253, 524
Csp6I	GTAC	4 cut(s)	6, 360, 1301, 1963
CspAI	ACCGGT	1 cut(s)	988
CviAII	CATG	4 cut(s)	1063, 1123, 1415, 1548
CviQI	GTAC	4 cut(s)	6, 360, 1301, 1963
DinI	GGCGCC	2 cut(s)	63, 924
DriI	GACNNNNNGTC	1 cut(s)	264
EaeI	YGGCCR	3 cut(s)	282, 417, 1933
EagI	CGGCCG	1 cut(s)	417
Eam1104I	CTCTTC	3 cut(s)	726, 1148, 2180
Eam1105I	GACNNNNNGTC	1 cut(s)	264
EarI	CTCTTC	3 cut(s)	726, 1148, 2180
EciI	GGCGGA	2 cut(s)	245, 2077
EclXI	CGGCCG	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	626
Eco31I	GGTCTC	3 cut(s)	1724, 1755, 2075
Eco47I	GGWCC	4 cut(s)	1544, 1627, 1672, 1729
Eco52I	CGGCCG	1 cut(s)	417
Eco57I	CTGAAG	3 cut(s)	726, 879, 1172
Eco88I	CYCGRG	1 cut(s)	1845
Eco91I	GGTNACC	1 cut(s)	312
EcoO109I	RGGNCCY	4 cut(s)	1627, 1672, 1692, 1729
EcoO65I	GGTNACC	1 cut(s)	312
EcoRII	CCWGG	2 cut(s)	558, 582
EcoT14I	CCWWGG	1 cut(s)	626
EcoT22I	ATGCAT	1 cut(s)	1478
EgeI	GGCGCC	2 cut(s)	63, 924
EheI	GGCGCC	2 cut(s)	63, 924
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	4 cut(s)	1066, 1126, 1418, 1551
FalI	AAGNNNNNCTT	6 cut(s)	145, 177, 262, 294, 2177, 2209
FaqI	GGGAC	2 cut(s)	1640, 1658
FatI	CATG	4 cut(s)	1062, 1122, 1414, 1547
FauI	CCCGC	1 cut(s)	906
FblI	GTMKAC	1 cut(s)	413
Fnu4HI	GCNGC	9 cut(s)	57, 60, 124, 285, 864, 980, 1956, 2045, 2151
FokI	GGATG	3 cut(s)	752, 1449, 2120
Fsp4HI	GCNGC	9 cut(s)	57, 60, 124, 285, 864, 980, 1956, 2045, 2151
GlaI	GCGC	5 cut(s)	63, 593, 924, 1897, 1920
GluI	GCNGC	9 cut(s)	57, 60, 124, 285, 864, 980, 1956, 2045, 2151
GsuI	CTGGAG	2 cut(s)	1206, 2115
HaeII	RGCGCY	2 cut(s)	65, 926
HaeIII	GGCC	7 cut(s)	284, 419, 631, 1323, 1585, 1694, 1935
HgaI	GACGC	2 cut(s)	253, 524
HhaI	GCGC	5 cut(s)	64, 594, 925, 1898, 1921
Hin1I	GRCGYC	3 cut(s)	62, 245, 923
Hin1II	CATG	4 cut(s)	1066, 1126, 1418, 1551
Hin6I	GCGC	5 cut(s)	62, 592, 923, 1896, 1919
HinP1I	GCGC	5 cut(s)	62, 592, 923, 1896, 1919
HincII	GTYRAC	4 cut(s)	1012, 1356, 1680, 2127
HindII	GTYRAC	4 cut(s)	1012, 1356, 1680, 2127
HindIII	AAGCTT	2 cut(s)	479, 1461
HphI	GGTGA	4 cut(s)	306, 856, 928, 2129
Hpy188I	TCNGA	4 cut(s)	204, 356, 777, 1424
Hpy99I	CGWCG	7 cut(s)	21, 247, 665, 979, 1121, 2092, 2095
HpyAV	CCTTC	5 cut(s)	171, 309, 792, 913, 1154
HpyCH4III	ACNGT	9 cut(s)	276, 318, 383, 1034, 1129, 1316, 1353, 1948, 2117
HpyCH4IV	ACGT	8 cut(s)	196, 605, 744, 837, 1014, 1368, 1381, 2099
HpyF10VI	GCNNNNNNNGC	8 cut(s)	120, 1460, 1691, 1847, 1927, 2044, 2147, 2171
HpySE526I	ACGT	8 cut(s)	196, 605, 744, 837, 1014, 1368, 1381, 2099
Hsp92I	GRCGYC	3 cut(s)	62, 245, 923
Hsp92II	CATG	4 cut(s)	1066, 1126, 1418, 1551
HspAI	GCGC	5 cut(s)	62, 592, 923, 1896, 1919
KasI	GGCGCC	2 cut(s)	61, 922
KflI	GGGWCCC	1 cut(s)	1672
Kpn2I	TCCGGA	1 cut(s)	146
KspI	CCGCGG	1 cut(s)	60
LguI	GCTCTTC	1 cut(s)	2180
LmnI	GCTCC	1 cut(s)	1187
Lsp1109I	GCAGC	3 cut(s)	110, 991, 2056
LweI	GCATC	5 cut(s)	43, 202, 1259, 1305, 2144
MaeII	ACGT	8 cut(s)	196, 605, 744, 837, 1014, 1368, 1381, 2099
MaeIII	GTNAC	6 cut(s)	312, 601, 694, 887, 1405, 1442
MbiI	CCGCTC	1 cut(s)	2150
MboII	GAAGA	9 cut(s)	294, 600, 743, 1165, 1277, 1791, 1794, 2194, 2197
MflI	RGATCY	7 cut(s)	67, 772, 970, 1398, 1507, 1515, 1538
MhlI	GDGCHC	1 cut(s)	988
MlsI	TGGCCA	1 cut(s)	1935
MluCI	AATT	3 cut(s)	350, 499, 718
MluNI	TGGCCA	1 cut(s)	1935
Mly113I	GGCGCC	2 cut(s)	62, 923
MlyI	GAGTC	7 cut(s)	274, 560, 889, 1134, 1837, 1868, 2122
MmeI	TCCRAC	2 cut(s)	182, 1510
Mox20I	TGGCCA	1 cut(s)	1935
Mph1103I	ATGCAT	1 cut(s)	1478
MroI	TCCGGA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	1935
MseI	TTAA	5 cut(s)	129, 320, 1241, 1725, 2221
MslI	CAYNNNNRTG	2 cut(s)	540, 2140
Msp20I	TGGCCA	1 cut(s)	1935
MspA1I	CMGCKG	3 cut(s)	59, 1094, 1150
MspR9I	CCNGG	5 cut(s)	560, 584, 1286, 1526, 1609
Mva1269I	GAATGC	2 cut(s)	547, 1892
MvaI	CCWGG	2 cut(s)	560, 584
MvnI	CGCG	5 cut(s)	59, 594, 1776, 1864, 1921
MwoI	GCNNNNNNNGC	8 cut(s)	120, 1460, 1691, 1847, 1927, 2044, 2147, 2171
NarI	GGCGCC	2 cut(s)	62, 923
NciI	CCSGG	3 cut(s)	1286, 1526, 1609
NheI	GCTAGC	2 cut(s)	133, 1292
NlaIII	CATG	4 cut(s)	1066, 1126, 1418, 1551
NmeAIII	GCCGAG	3 cut(s)	445, 711, 1882
NmuCI	GTSAC	3 cut(s)	312, 601, 694
NsiI	ATGCAT	1 cut(s)	1478
NspV	TTCGAA	1 cut(s)	2205
PagI	TCATGA	1 cut(s)	1122
PciSI	GCTCTTC	1 cut(s)	2180
PcsI	WCGNNNNNNNCGW	2 cut(s)	1116, 2096
PctI	GAATGC	2 cut(s)	547, 1892
PfeI	GAWTC	3 cut(s)	551, 808, 1812
PfoI	TCCNGGA	1 cut(s)	582
PinAI	ACCGGT	1 cut(s)	988
PkrI	GCNGC	9 cut(s)	58, 61, 125, 286, 865, 981, 1957, 2046, 2152
PleI	GAGTC	7 cut(s)	273, 560, 889, 1134, 1837, 1867, 2122
PluTI	GGCGCC	2 cut(s)	65, 926
PpsI	GAGTC	7 cut(s)	273, 560, 889, 1134, 1837, 1867, 2122
PpuMI	RGGWCCY	3 cut(s)	1627, 1672, 1729
Psp1406I	AACGTT	1 cut(s)	837
Psp5II	RGGWCCY	3 cut(s)	1627, 1672, 1729
Psp6I	CCWGG	2 cut(s)	558, 582
PspEI	GGTNACC	1 cut(s)	312
PspGI	CCWGG	2 cut(s)	558, 582
PspPI	GGNCC	6 cut(s)	1321, 1544, 1627, 1672, 1692, 1729
PspPPI	RGGWCCY	3 cut(s)	1627, 1672, 1729
PstI	CTGCAG	2 cut(s)	211, 1456
PstNI	CAGNNNCTG	1 cut(s)	1541
PsuI	RGATCY	7 cut(s)	67, 772, 970, 1398, 1507, 1515, 1538
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	4 cut(s)	7, 361, 1302, 1964
RsaNI	GTAC	4 cut(s)	6, 360, 1301, 1963
RseI	CAYNNNNRTG	2 cut(s)	540, 2140
SacII	CCGCGG	1 cut(s)	60
SapI	GCTCTTC	1 cut(s)	2180
SaqAI	TTAA	5 cut(s)	129, 320, 1241, 1725, 2221
SatI	GCNGC	9 cut(s)	57, 60, 124, 285, 864, 980, 1956, 2045, 2151
Sau96I	GGNCC	6 cut(s)	1321, 1544, 1627, 1672, 1692, 1729
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	7 cut(s)	274, 560, 889, 1134, 1837, 1868, 2122
ScrFI	CCNGG	5 cut(s)	560, 584, 1286, 1526, 1609
SduI	GDGCHC	1 cut(s)	988
SfaNI	GCATC	5 cut(s)	43, 202, 1259, 1305, 2144
SfcI	CTRYAG	2 cut(s)	207, 1452
SfoI	GGCGCC	2 cut(s)	63, 924
Sfr303I	CCGCGG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	2205
SgrAI	CRCCGGYG	1 cut(s)	988
SgrBI	CCGCGG	1 cut(s)	60
SinI	GGWCC	4 cut(s)	1544, 1627, 1672, 1729
SmiMI	CAYNNNNRTG	2 cut(s)	540, 2140
SmlI	CTYRAG	1 cut(s)	1782
SmoI	CTYRAG	1 cut(s)	1782
Sse9I	AATT	3 cut(s)	350, 499, 718
SspDI	GGCGCC	2 cut(s)	61, 922
StyD4I	CCNGG	5 cut(s)	558, 582, 1284, 1524, 1607
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	9 cut(s)	276, 318, 383, 1034, 1129, 1316, 1353, 1948, 2117
TaiI	ACGT	8 cut(s)	199, 608, 747, 840, 1017, 1371, 1384, 2102
TaqI	TCGA	8 cut(s)	72, 242, 650, 823, 1736, 1792, 1815, 2205
TaqII	GACCGA	2 cut(s)	300, 1178
TasI	AATT	3 cut(s)	350, 499, 718
TatI	WGTACW	2 cut(s)	359, 1962
TauI	GCSGC	6 cut(s)	59, 62, 287, 866, 1958, 2153
TfiI	GAWTC	3 cut(s)	551, 808, 1812
Tru1I	TTAA	5 cut(s)	129, 320, 1241, 1725, 2221
Tru9I	TTAA	5 cut(s)	129, 320, 1241, 1725, 2221
TscAI	CASTG	2 cut(s)	388, 909
TseFI	GTSAC	3 cut(s)	312, 601, 694
TseI	GCWGC	3 cut(s)	123, 979, 2044
Tsp45I	GTSAC	3 cut(s)	312, 601, 694
TspDTI	ATGAA	4 cut(s)	428, 1043, 2124, 2195
TspGWI	ACGGA	4 cut(s)	565, 963, 1325, 1896
TspRI	CASTG	2 cut(s)	388, 909
VneI	GTGCAC	1 cut(s)	984
VpaK11BI	GGWCC	4 cut(s)	1544, 1627, 1672, 1729
XapI	RAATTY	1 cut(s)	350
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1526, 2139
XmiI	GTMKAC	1 cut(s)	413
ZrmI	AGTACT	1 cut(s)	361
Zsp2I	ATGCAT	1 cut(s)	1478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.