FvH4_5g33780

von Willebrand factor type A domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0014171
Physical Location & Seq
Reverse (-)
24456395 .. 24459403
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g33780.t1

Sequence Viewer

Length: 2247 bp
ATGGGCACTGGTTGGAGACGAGCCTTTTGCACCACGATTCCTCGAGATCCATCAGAACCGAGAGCTTCAGATCAAAAGCAGAGGAGTCCAAGTCCGAGCCCGAGCCCAAGAACCCGACTGAGCTTCTTCTCCTCCGGCGGTAGCAACCCGTCAACTCCGAGATTACGTTGTAAAACAGGGTCGGAGGCTCTGCTTCAGAAATCGAACAGCATGCCTACCAATGATAATGTCGCCGAGAGCCCGAGAGTACTTGAAATCAAAACCAGCAGTACTCCCAAATCGTCTAATCCGACTTCTCCTCGATCCCCTCTCAAGCTCTCCCTCTTCAAGAACAGCTTTAAATTTCGAAGTAGCTGTGGAATTTGCTTGAATAGTGTGAAGACTGGGCAAGGCACAGCGATTTACACAGCAGAGTGTAGCCATGCCTTTCATTTCCCCTGCATAGCTTCTTATGTACGGAAGCATGGAAGCCTCGTCTGCCCTGTTTGCAATTCCTCATGGAAAGACGTTCCTCTATTGGCTATGCATAAAACCACATGCTCTGAATCTCATCCGCCACCCAACGACGCCGTTTCGGCACCGGTCACCCCGAAGGCCAAAGTCGAAGAGAAGAAGGTGATAGCTGAGTCCCCTTCTCCCAGATACACATTGAAACCCTACGACGATGACGAACCTCTTCTGTCTCCGACCGTCGGCGGCCGGATCATCCCCATTCCCGAAGCTGAGGAGGAGGACGAAGACGTTGAAGAGTTCCAGGGCTTTTTCGTCAATCCCAACGCTTCCGGTTCGGCCAAGTATTCCGATGATCCGGAGATGAGTAATGGCAGAGATTTCAGGAACAATGTGCAGGTCAGGCTCTTACCGGAGGCTGCTCTGCTTTCTTCTGGCCGGGGTTTCGAGACCTACGCAGTGGCTTTGAGAGTCGAGGCTCCTCCGGCGCCGGCGCGTCAGGCTACCAGCACGTCGATTCTGGACCCTTTGCACCGCGCTCCGATCGATTTGGTGACGGTGCTCGACGTCAGCGGCAGCATGACCGGCGGGAAGCTTCAGATGCTGAAGCGCGCCATGCGCTTGGTTATCTCCTCTCTCGGCTCGGCTGATCGGCTCTCCATCGTGGCCTTCTCGGCTTCGCCGAAGAGACTGATGCCCCTGAAGAGAATGACGGCAAATGGTCAACGCGCGGCTCGCCGCATCGTTGACCGGCTGGTCTGCGGTCAAGGGAGTAGCGTTGGCGAGGCCTTGAGGAAGGCCACGAAGATTCTGGAAGACCGGAGGGAGAGGAACCCGGTGGCGAGTATCATGCTCTTATCGGACGGTCAGGACGAGAGGGTGAACAACAACAACAACAACAACTCTGGCTCAAACATTCAGCGTCATGGCTCAAACGACGTGTCGTCTACCCGGTTCGCCCACATTGAGATTCCGGTTCATGCATTCGGGTTCGGGCAGAACGCCGGGTACTGCCAGGAACCGGCGGAGGACGCCTTTGCAAAATGCGTCGGGGGTTTATTAAGCGTTGTGGTTCAGGACTTGAGAGTCCAGCTCGGATTCTCGTCCGGCTCTGCTCCGGCCGAGATAACGGCCATCTATTCCTGCAACGGGCGGCCCACCGTGCACGGCTCGGGTTCGATTCGGCTCGGAGATTTGTACGCCGAGGAAGAGAGGGAGTTGCTGGTTGAGCTACGCATCCCTATCTCGGCAGCTGGGACCCACCACGTGATGTCAGTGCGGTGCTTGTACAAAGACCCGGCTACTCAAGAGGTCGTCTACGGCAAGGAGCAGGGGCTAGTGGTGCCCCTTACGCCGACAGCCGTCCGATCGGTTGCCGCAAGTCCAAAGATCCAACGGCTGAGAAGCCTTTTCATTACCACACGTGCCGTGGCTGAGTCACGGAGGCTGGTCGAGCACAATGACTTCCAAAGTGCACATCACTTGCTAGCATCGACTCGAGCTTTGCTCATGCAATCCGGGTCGGCTTCGGCGGACGAGTACATTCGAGCATTGGAGGCTCAGCTGGCGGAGCTGCATTGGAAGAGGCAGAATCAGCTGGAGGTGCAGCACCAACAGCAAATGATAATGCAGCGGCGGAGAATGAGCGAGAGGGAGATGGTTATGGACGAGAATGGCGATCCGCTGACGCCGACTTCGGCGTGGAGGGCGGCCGAGCAGCTAGCTAAGGTGGCCATGATGAAGAAGTCATTGAACAGGGTCAGTGACTTGCACGGGTTTGAAAATGCTAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA_2 zf-RING_11 zf-RING_2

Protein Analysis

749

Amino Acids

81.85

Weight (kDa)

9.11

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 118 - 164 5.9e-09 Ring finger domain
zf-RING_11 PF17123 119 - 148 5.9e-09 RING-like zinc finger
zf-C3HC4 PF00097 119 - 163 2.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 121 - 164 2.4e-06 RING-H2 zinc finger domain
VWA PF00092 333 - 445 1.4e-14 von Willebrand factor type A domain
VWA_3 PF13768 333 - 483 1.2e-10 von Willebrand factor type A domain
VWA_2 PF13519 334 - 440 8.7e-21 von Willebrand factor type A domain
WAV3_C PF25243 611 - 684 9e-36 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49665
fragaria_vesca FvH4_5g33780 FvH4_5g33780
malus_domestica MD08G1207200.v1.1 MD15G1391600.v1.1
prunus_persica Prupe.1G540900_v2.0.a1
pyrus_communis pycom08g17950
rosa_chinensis RchiOBHm_Chr7g0233091
rosa_laevigata RLG00000001300
rosa_multiflora Rmu_sc0016344.1_g000006
rosa_roxburghii Rroxscaffold_3G00227690
rosa_rugosa Rorug07G0278100
rosa_samantha Rh7AG433300 Rh7BG406100 Rh7CG452700 Rh7DG421900
rosa_wichuraiana Rw7G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1205, 1535
AatII GACGTC 1 cut(s) 1020
Acc36I ACCTGC 1 cut(s) 838
AccB1I GGYRCC 3 cut(s) 577, 937, 1792
AccI GTMKAC 2 cut(s) 1397, 1767
AccII CGCG 5 cut(s) 946, 987, 1062, 1179, 1181
AccIII TCCGGA 1 cut(s) 808
AclWI GGATC 6 cut(s) 41, 297, 710, 800, 1834, 2123
AcoI YGGCCR 7 cut(s) 697, 789, 886, 1569, 1581, 2160, 2181
AcsI RAATTY 2 cut(s) 341, 360
AcuI CTGAAG 5 cut(s) 51, 179, 1031, 1076, 1172
AcvI CACGTG 2 cut(s) 1717, 1874
AcyI GRCGYC 5 cut(s) 567, 938, 1017, 1482, 2138
AdeI CACNNNGTG 1 cut(s) 1717
AfaI GTAC 7 cut(s) 249, 271, 456, 1460, 1649, 1739, 1991
AfiI CCNNNNNNNGG 4 cut(s) 692, 1471, 1599, 1696
AflIII ACRYGT 2 cut(s) 1389, 1871
AgeI ACCGGT 1 cut(s) 580
AgsI TTSAA 7 cut(s) 254, 328, 370, 652, 746, 2203, 2231
AhdI GACNNNNNGTC 1 cut(s) 1393
AjiI CACGTC 2 cut(s) 963, 1390
AjnI CCWGG 2 cut(s) 753, 1464
Alw21I GWGCWC 4 cut(s) 1014, 1617, 1908, 1927
Alw26I GTCTC 4 cut(s) 10, 687, 893, 1132
Alw44I GTGCAC 2 cut(s) 1613, 1923
AlwI GGATC 6 cut(s) 41, 297, 710, 800, 1834, 2123
AlwNI CAGNNNCTG 1 cut(s) 1054
Ama87I CYCGRG 5 cut(s) 42, 100, 241, 1621, 1947
Aor13HI TCCGGA 1 cut(s) 808
ApaLI GTGCAC 2 cut(s) 1613, 1923
ApeKI GCWGC 7 cut(s) 869, 1026, 1700, 2023, 2056, 2080, 2167
ApoI RAATTY 2 cut(s) 341, 360
ArsI GACNNNNNNTTYG 8 cut(s) 9, 41, 1376, 1408, 1936, 1968, 2128, 2160
AsiGI ACCGGT 1 cut(s) 580
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 7 cut(s) 940, 946, 989, 1062, 1064, 1071, 1181
AspS9I GGNCC 3 cut(s) 973, 1605, 1707
AsuC2I CCSGG 6 cut(s) 890, 1286, 1402, 1456, 1748, 1969
AsuHPI GGTGA 4 cut(s) 577, 628, 1015, 1342
AsuII TTCGAA 1 cut(s) 346
AsuNHI GCTAGC 2 cut(s) 1936, 2170
AvaI CYCGRG 5 cut(s) 42, 100, 241, 1621, 1947
AvaII GGWCC 2 cut(s) 973, 1707
BaeGI GKGCMC 4 cut(s) 8, 1617, 1797, 1927
BalI TGGCCA 1 cut(s) 2183
BanI GGYRCC 3 cut(s) 577, 937, 1792
BanII GRGCYC 3 cut(s) 101, 107, 242
BbrPI CACGTG 2 cut(s) 1717, 1874
BbsI GAAGAC 3 cut(s) 386, 744, 1272
Bbv12I GWGCWC 4 cut(s) 1014, 1617, 1908, 1927
BbvCI CCTCAGC 1 cut(s) 723
BbvI GCAGC 7 cut(s) 856, 1038, 1712, 2010, 2068, 2092, 2179
BccI CCATC 4 cut(s) 58, 1118, 1592, 2101
BceAI ACGGC 8 cut(s) 554, 1179, 1596, 1633, 1786, 1796, 1862, 1862
BcgI CGANNNNNNTGC 6 cut(s) 9, 43, 193, 227, 1282, 1316
BciT130I CCWGG 2 cut(s) 755, 1466
BcnI CCSGG 6 cut(s) 890, 1286, 1402, 1456, 1748, 1969
BcoDI GTCTC 4 cut(s) 10, 687, 893, 1132
BfaI CTAG 4 cut(s) 1787, 1937, 2171, 2238
BfoI RGCGCY 1 cut(s) 941
BfuAI ACCTGC 1 cut(s) 838
BglI GCCNNNNNGGC 2 cut(s) 575, 1124
BlpI GCTNAGC 1 cut(s) 2010
BmcAI AGTACT 2 cut(s) 249, 271
Bme1390I CCNGG 8 cut(s) 755, 890, 1286, 1402, 1456, 1466, 1748, 1969
Bme18I GGWCC 2 cut(s) 973, 1707
BmeRI GACNNNNNGTC 1 cut(s) 1393
BmeT110I CYCGRG 5 cut(s) 42, 100, 241, 1621, 1947
BmgBI CACGTC 2 cut(s) 963, 1390
BmgT120I GGNCC 3 cut(s) 973, 1605, 1707
BmiI GGNNCC 9 cut(s) 579, 930, 939, 975, 1283, 1470, 1708, 1709, 1794
BmrFI CCNGG 8 cut(s) 755, 890, 1286, 1402, 1456, 1466, 1748, 1969
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 5 cut(s) 1041, 1134, 1200, 1695, 1949
BmtI GCTAGC 2 cut(s) 1940, 2174
BmuI ACTGGG 1 cut(s) 393
BoxI GACNNNNGTC 1 cut(s) 1811
BpiI GAAGAC 3 cut(s) 386, 744, 1272
BplI GAGNNNNNCTC 4 cut(s) 1527, 1559, 1941, 1973
BpmI CTGGAG 1 cut(s) 2069
Bpu10I CCTNAGC 2 cut(s) 723, 2175
Bpu1102I GCTNAGC 1 cut(s) 2010
Bpu14I TTCGAA 1 cut(s) 346
BpuEI CTTGAG 4 cut(s) 296, 1261, 1552, 1740
BpuMI CCSGG 6 cut(s) 890, 1286, 1402, 1456, 1748, 1969
Bsa29I ATCGAT 1 cut(s) 996
BsaAI YACGTR 2 cut(s) 1717, 1874
BsaHI GRCGYC 5 cut(s) 567, 938, 1017, 1482, 2138
BsaI GGTCTC 1 cut(s) 893
BsaJI CCNNGG 4 cut(s) 754, 889, 1653, 1878
BsaWI WCCGGW 6 cut(s) 580, 782, 808, 862, 1269, 1423
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 4 cut(s) 692, 1471, 1599, 1696
Bse118I RCCGGY 5 cut(s) 580, 940, 1034, 1200, 1471
Bse1I ACTGG 2 cut(s) 13, 388
BseAI TCCGGA 1 cut(s) 808
BseBI CCWGG 2 cut(s) 755, 1466
BseCI ATCGAT 1 cut(s) 996
BseDI CCNNGG 4 cut(s) 754, 889, 1653, 1878
BseGI GGATG 3 cut(s) 550, 705, 1686
BseLI CCNNNNNNNGG 4 cut(s) 692, 1471, 1599, 1696
BseMII CTCAG 6 cut(s) 110, 615, 714, 1841, 1875, 2024
BseNI ACTGG 2 cut(s) 13, 388
BsePI GCGCGC 1 cut(s) 1060
BseRI GAGGAG 7 cut(s) 97, 121, 288, 740, 743, 921, 1072
BseSI GKGCMC 4 cut(s) 8, 1617, 1797, 1927
BseX3I CGGCCG 3 cut(s) 697, 1569, 2160
BseXI GCAGC 7 cut(s) 856, 1038, 1712, 2010, 2068, 2092, 2179
BseYI CCCAGC 1 cut(s) 1703
BsgI GTGCAG 2 cut(s) 866, 2075
Bsh1236I CGCG 5 cut(s) 946, 987, 1062, 1179, 1181
Bsh1285I CGRYCG 6 cut(s) 690, 700, 996, 1572, 1820, 2163
BshNI GGYRCC 3 cut(s) 577, 937, 1792
BshTI ACCGGT 1 cut(s) 580
BshVI ATCGAT 1 cut(s) 996
BsiEI CGRYCG 6 cut(s) 690, 700, 996, 1572, 1820, 2163
BsiHKAI GWGCWC 4 cut(s) 1014, 1617, 1908, 1927
BsiHKCI CYCGRG 5 cut(s) 42, 100, 241, 1621, 1947
BslFI GGGAC 2 cut(s) 613, 1720
BslI CCNNNNNNNGG 4 cut(s) 692, 1471, 1599, 1696
BsmAI GTCTC 4 cut(s) 10, 687, 893, 1132
BsmBI CGTCTC 1 cut(s) 10
BsmFI GGGAC 2 cut(s) 613, 1720
BsmI GAATGC 1 cut(s) 1433
Bso31I GGTCTC 1 cut(s) 893
BsoBI CYCGRG 5 cut(s) 42, 100, 241, 1621, 1947
Bsp119I TTCGAA 1 cut(s) 346
Bsp1286I GDGCHC 9 cut(s) 8, 101, 107, 242, 1014, 1617, 1797, 1908, 1927
Bsp13I TCCGGA 1 cut(s) 808
Bsp1407I TGTACA 1 cut(s) 1737
Bsp1720I GCTNAGC 1 cut(s) 2010
BspCNI CTCAG 6 cut(s) 111, 616, 715, 1842, 1876, 2023
BspDI ATCGAT 1 cut(s) 996
BspEI TCCGGA 1 cut(s) 808
BspFNI CGCG 5 cut(s) 946, 987, 1062, 1179, 1181
BspLI GGNNCC 9 cut(s) 579, 930, 939, 975, 1283, 1470, 1708, 1709, 1794
BspMI ACCTGC 1 cut(s) 838
BspOI GCTAGC 2 cut(s) 1940, 2174
BspPI GGATC 6 cut(s) 41, 297, 710, 800, 1834, 2123
BspT104I TTCGAA 1 cut(s) 346
BspT107I GGYRCC 3 cut(s) 577, 937, 1792
BspTNI GGTCTC 1 cut(s) 893
BsrFI RCCGGY 5 cut(s) 580, 940, 1034, 1200, 1471
BsrGI TGTACA 1 cut(s) 1737
BsrI ACTGG 2 cut(s) 13, 388
BssAI RCCGGY 5 cut(s) 580, 940, 1034, 1200, 1471
BssECI CCNNGG 4 cut(s) 754, 889, 1653, 1878
BssHII GCGCGC 1 cut(s) 1060
BssNI GRCGYC 5 cut(s) 567, 938, 1017, 1482, 2138
Bst2UI CCWGG 2 cut(s) 755, 1466
Bst4CI ACNGT 4 cut(s) 691, 1009, 1316, 1612
Bst6I CTCTTC 8 cut(s) 329, 600, 681, 741, 1130, 1148, 1653, 2027
BstACI GRCGYC 5 cut(s) 567, 938, 1017, 1482, 2138
BstAUI TGTACA 1 cut(s) 1737
BstBAI YACGTR 2 cut(s) 1717, 1874
BstBI TTCGAA 1 cut(s) 346
BstC8I GCNNGC 7 cut(s) 212, 942, 1062, 1186, 1938, 2016, 2172
BstDEI CTNAG 7 cut(s) 119, 624, 723, 1850, 1884, 2010, 2175
BstDSI CCRYGG 1 cut(s) 1878
BstEII GGTNACC 1 cut(s) 583
BstF5I GGATG 3 cut(s) 550, 705, 1686
BstFNI CGCG 5 cut(s) 946, 987, 1062, 1179, 1181
BstH2I RGCGCY 1 cut(s) 941
BstHHI GCGC 7 cut(s) 940, 946, 989, 1062, 1064, 1071, 1181
BstMAI GTCTC 4 cut(s) 10, 687, 893, 1132
BstMCI CGRYCG 6 cut(s) 690, 700, 996, 1572, 1820, 2163
BstNI CCWGG 2 cut(s) 755, 1466
BstNSI RCATGY 2 cut(s) 214, 540
BstPAI GACNNNNGTC 1 cut(s) 1811
BstPI GGTNACC 1 cut(s) 583
BstSCI CCNGG 8 cut(s) 753, 888, 1284, 1400, 1454, 1464, 1746, 1967
BstSLI GKGCMC 4 cut(s) 8, 1617, 1797, 1927
BstUI CGCG 5 cut(s) 946, 987, 1062, 1179, 1181
BstV1I GCAGC 7 cut(s) 856, 1038, 1712, 2010, 2068, 2092, 2179
BstV2I GAAGAC 3 cut(s) 386, 744, 1272
BstX2I RGATCY 2 cut(s) 46, 1839
BstXI CCANNNNNNTGG 1 cut(s) 1072
BstYI RGATCY 2 cut(s) 46, 1839
BstZI CGGCCG 3 cut(s) 697, 1569, 2160
Bsu15I ATCGAT 1 cut(s) 996
BsuTUI ATCGAT 1 cut(s) 996
BtgI CCRYGG 1 cut(s) 1878
BtrI CACGTC 2 cut(s) 963, 1390
BtsCI GGATG 3 cut(s) 550, 705, 1686
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 4 cut(s) 6, 915, 1731, 2218
BveI ACCTGC 1 cut(s) 838
Cac8I GCNNGC 7 cut(s) 212, 942, 1062, 1186, 1938, 2016, 2172
CaiI CAGNNNCTG 1 cut(s) 1054
CfoI GCGC 7 cut(s) 940, 946, 989, 1062, 1064, 1071, 1181
Cfr10I RCCGGY 5 cut(s) 580, 940, 1034, 1200, 1471
Cfr13I GGNCC 3 cut(s) 973, 1605, 1707
ClaI ATCGAT 1 cut(s) 996
CseI GACGC 6 cut(s) 575, 935, 1361, 1486, 1490, 2146
Csp6I GTAC 7 cut(s) 248, 270, 455, 1459, 1648, 1738, 1990
CspAI ACCGGT 1 cut(s) 580
CviQI GTAC 7 cut(s) 248, 270, 455, 1459, 1648, 1738, 1990
DdeI CTNAG 7 cut(s) 119, 624, 723, 1850, 1884, 2010, 2175
DinI GGCGCC 1 cut(s) 939
DraI TTTAAA 1 cut(s) 340
DraIII CACNNNGTG 1 cut(s) 1717
DrdI GACNNNNNNGTC 2 cut(s) 1205, 1535
DriI GACNNNNNGTC 1 cut(s) 1393
DseDI GACNNNNNNGTC 2 cut(s) 1205, 1535
EaeI YGGCCR 7 cut(s) 697, 789, 886, 1569, 1581, 2160, 2181
EagI CGGCCG 3 cut(s) 697, 1569, 2160
Eam1104I CTCTTC 8 cut(s) 329, 600, 681, 741, 1130, 1148, 1653, 2027
Eam1105I GACNNNNNGTC 1 cut(s) 1393
EarI CTCTTC 8 cut(s) 329, 600, 681, 741, 1130, 1148, 1653, 2027
EciI GGCGGA 5 cut(s) 543, 1490, 1997, 2033, 2101
EclXI CGGCCG 3 cut(s) 697, 1569, 2160
Eco147I AGGCCT 1 cut(s) 1238
Eco24I GRGCYC 3 cut(s) 101, 107, 242
Eco31I GGTCTC 1 cut(s) 893
Eco47I GGWCC 2 cut(s) 973, 1707
Eco52I CGGCCG 3 cut(s) 697, 1569, 2160
Eco57I CTGAAG 5 cut(s) 51, 179, 1031, 1076, 1172
Eco72I CACGTG 2 cut(s) 1717, 1874
Eco88I CYCGRG 5 cut(s) 42, 100, 241, 1621, 1947
Eco91I GGTNACC 1 cut(s) 583
EcoO109I RGGNCCY 1 cut(s) 1707
EcoO65I GGTNACC 1 cut(s) 583
EcoRII CCWGG 2 cut(s) 753, 1464
EcoT22I ATGCAT 2 cut(s) 528, 1435
EcoT38I GRGCYC 3 cut(s) 101, 107, 242
EgeI GGCGCC 1 cut(s) 939
EheI GGCGCC 1 cut(s) 939
Esp3I CGTCTC 1 cut(s) 10
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 2 cut(s) 613, 1720
FauI CCCGC 1 cut(s) 1031
FblI GTMKAC 2 cut(s) 1397, 1767
FokI GGATG 3 cut(s) 537, 692, 1673
FriOI GRGCYC 3 cut(s) 101, 107, 242
FspBI CTAG 4 cut(s) 1787, 1937, 2171, 2238
GlaI GCGC 7 cut(s) 939, 945, 988, 1061, 1063, 1070, 1180
GsaI CCCAGC 1 cut(s) 1707
GsuI CTGGAG 1 cut(s) 2069
HaeII RGCGCY 1 cut(s) 941
HgaI GACGC 6 cut(s) 575, 935, 1361, 1486, 1490, 2146
HhaI GCGC 7 cut(s) 940, 946, 989, 1062, 1064, 1071, 1181
Hin1I GRCGYC 5 cut(s) 567, 938, 1017, 1482, 2138
Hin6I GCGC 7 cut(s) 938, 944, 987, 1060, 1062, 1069, 1179
HinP1I GCGC 7 cut(s) 938, 944, 987, 1060, 1062, 1069, 1179
HincII GTYRAC 3 cut(s) 153, 1175, 1198
HindII GTYRAC 3 cut(s) 153, 1175, 1198
HindIII AAGCTT 1 cut(s) 1043
HphI GGTGA 4 cut(s) 577, 628, 1015, 1342
Hpy166II GTNNAC 8 cut(s) 153, 1175, 1198, 1333, 1398, 1615, 1768, 1925
Hpy8I GTNNAC 8 cut(s) 153, 1175, 1198, 1333, 1398, 1615, 1768, 1925
Hpy99I CGWCG 7 cut(s) 569, 665, 695, 967, 1019, 1391, 1502
HpyAV CCTTC 5 cut(s) 586, 607, 642, 1129, 1240
HpyCH4III ACNGT 4 cut(s) 691, 1009, 1316, 1612
HpyCH4IV ACGT 8 cut(s) 166, 507, 741, 962, 1017, 1389, 1716, 1873
HpyF3I CTNAG 7 cut(s) 119, 624, 723, 1850, 1884, 2010, 2175
HpySE526I ACGT 8 cut(s) 166, 507, 741, 962, 1017, 1389, 1716, 1873
Hsp92I GRCGYC 5 cut(s) 567, 938, 1017, 1482, 2138
HspAI GCGC 7 cut(s) 938, 944, 987, 1060, 1062, 1069, 1179
KasI GGCGCC 1 cut(s) 937
KflI GGGWCCC 1 cut(s) 1707
Kpn2I TCCGGA 1 cut(s) 808
KroI GCCGGC 1 cut(s) 940
KroNI GCCGGC 1 cut(s) 942
LmnI GCTCC 5 cut(s) 934, 994, 1570, 1777, 2020
Lsp1109I GCAGC 7 cut(s) 856, 1038, 1712, 2010, 2068, 2092, 2179
LweI GCATC 5 cut(s) 1041, 1134, 1200, 1695, 1949
MaeI CTAG 4 cut(s) 1787, 1937, 2171, 2238
MaeII ACGT 8 cut(s) 166, 507, 741, 962, 1017, 1389, 1716, 1873
MaeIII GTNAC 4 cut(s) 583, 1003, 1887, 2213
MflI RGATCY 2 cut(s) 46, 1839
MhlI GDGCHC 9 cut(s) 8, 101, 107, 242, 1014, 1617, 1797, 1908, 1927
MlsI TGGCCA 1 cut(s) 2183
MluCI AATT 3 cut(s) 341, 360, 490
MluNI TGGCCA 1 cut(s) 2183
Mly113I GGCGCC 1 cut(s) 938
MlyI GAGTC 6 cut(s) 94, 635, 930, 1545, 1895, 1939
MmeI TCCRAC 4 cut(s) 162, 314, 710, 1867
Mox20I TGGCCA 1 cut(s) 2183
Mph1103I ATGCAT 2 cut(s) 528, 1435
MreI CGCCGGCG 1 cut(s) 940
MroI TCCGGA 1 cut(s) 808
MroNI GCCGGC 1 cut(s) 940
MroXI GAANNNNTTC 1 cut(s) 675
MscI TGGCCA 1 cut(s) 2183
MseI TTAA 3 cut(s) 339, 1511, 2245
Msp20I TGGCCA 1 cut(s) 2183
MspA1I CMGCKG 6 cut(s) 1023, 1703, 2014, 2047, 2083, 2134
MspR9I CCNGG 8 cut(s) 755, 890, 1286, 1402, 1456, 1466, 1748, 1969
Mva1269I GAATGC 1 cut(s) 1433
MvaI CCWGG 2 cut(s) 755, 1466
MvnI CGCG 5 cut(s) 946, 987, 1062, 1179, 1181
NaeI GCCGGC 1 cut(s) 942
NarI GGCGCC 1 cut(s) 938
NciI CCSGG 6 cut(s) 890, 1286, 1402, 1456, 1748, 1969
NgoMIV GCCGGC 1 cut(s) 940
NheI GCTAGC 2 cut(s) 1936, 2170
NlaIV GGNNCC 9 cut(s) 579, 930, 939, 975, 1283, 1470, 1708, 1709, 1794
NmeAIII GCCGAG 8 cut(s) 259, 1068, 1073, 1103, 1597, 1676, 1678, 2188
NmuCI GTSAC 4 cut(s) 583, 1003, 1887, 2213
NsiI ATGCAT 2 cut(s) 528, 1435
NspI RCATGY 2 cut(s) 214, 540
NspV TTCGAA 1 cut(s) 346
PaeI GCATGC 1 cut(s) 214
PaeR7I CTCGAG 2 cut(s) 42, 1947
PauI GCGCGC 1 cut(s) 1060
PceI AGGCCT 1 cut(s) 1238
PcsI WCGNNNNNNNCGW 5 cut(s) 287, 666, 1130, 1320, 2124
PctI GAATGC 1 cut(s) 1433
PdiI GCCGGC 1 cut(s) 942
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 8 cut(s) 37, 545, 967, 1258, 1420, 1548, 1630, 2041
PinAI ACCGGT 1 cut(s) 580
Ple19I CGATCG 2 cut(s) 996, 1820
PleI GAGTC 6 cut(s) 93, 634, 929, 1544, 1894, 1939
PluTI GGCGCC 1 cut(s) 941
PmaCI CACGTG 2 cut(s) 1717, 1874
PmlI CACGTG 2 cut(s) 1717, 1874
PpsI GAGTC 6 cut(s) 93, 634, 929, 1544, 1894, 1939
Ppu21I YACGTR 2 cut(s) 1717, 1874
PpuMI RGGWCCY 1 cut(s) 1707
PshAI GACNNNNGTC 1 cut(s) 1811
Psp5II RGGWCCY 1 cut(s) 1707
Psp6I CCWGG 2 cut(s) 753, 1464
PspCI CACGTG 2 cut(s) 1717, 1874
PspEI GGTNACC 1 cut(s) 583
PspFI CCCAGC 1 cut(s) 1703
PspGI CCWGG 2 cut(s) 753, 1464
PspN4I GGNNCC 9 cut(s) 579, 930, 939, 975, 1283, 1470, 1708, 1709, 1794
PspPI GGNCC 3 cut(s) 973, 1605, 1707
PspPPI RGGWCCY 1 cut(s) 1707
PspXI VCTCGAGB 1 cut(s) 1947
PsrI GAACNNNNNNTAC 2 cut(s) 1442, 1474
PstNI CAGNNNCTG 1 cut(s) 1054
PsuI RGATCY 2 cut(s) 46, 1839
PteI GCGCGC 1 cut(s) 1060
PvuI CGATCG 2 cut(s) 996, 1820
PvuII CAGCTG 3 cut(s) 1703, 2014, 2047
RsaI GTAC 7 cut(s) 249, 271, 456, 1460, 1649, 1739, 1991
RsaNI GTAC 7 cut(s) 248, 270, 455, 1459, 1648, 1738, 1990
SaqAI TTAA 3 cut(s) 339, 1511, 2245
Sau96I GGNCC 3 cut(s) 973, 1605, 1707
ScaI AGTACT 2 cut(s) 249, 271
SchI GAGTC 6 cut(s) 94, 635, 930, 1545, 1895, 1939
ScrFI CCNGG 8 cut(s) 755, 890, 1286, 1402, 1456, 1466, 1748, 1969
SduI GDGCHC 9 cut(s) 8, 101, 107, 242, 1014, 1617, 1797, 1908, 1927
SfaNI GCATC 5 cut(s) 1041, 1134, 1200, 1695, 1949
SfoI GGCGCC 1 cut(s) 939
Sfr274I CTCGAG 2 cut(s) 42, 1947
SfuI TTCGAA 1 cut(s) 346
SgrAI CRCCGGYG 1 cut(s) 940
SinI GGWCC 2 cut(s) 973, 1707
SlaI CTCGAG 2 cut(s) 42, 1947
SmlI CTYRAG 6 cut(s) 42, 311, 1240, 1531, 1755, 1947
SmoI CTYRAG 6 cut(s) 42, 311, 1240, 1531, 1755, 1947
SphI GCATGC 1 cut(s) 214
Sse9I AATT 3 cut(s) 341, 360, 490
SseBI AGGCCT 1 cut(s) 1238
SspDI GGCGCC 1 cut(s) 937
SspMI CTAG 4 cut(s) 1787, 1937, 2171, 2238
StuI AGGCCT 1 cut(s) 1238
StyD4I CCNGG 8 cut(s) 753, 888, 1284, 1400, 1454, 1464, 1746, 1967
TaaI ACNGT 4 cut(s) 691, 1009, 1316, 1612
TaiI ACGT 8 cut(s) 169, 510, 744, 965, 1020, 1392, 1719, 1876
TasI AATT 3 cut(s) 341, 360, 490
TatI WGTACW 4 cut(s) 247, 269, 1737, 1989
TauI GCSGC 8 cut(s) 699, 1026, 1184, 1191, 1606, 1829, 2086, 2162
TfiI GAWTC 8 cut(s) 37, 545, 967, 1258, 1420, 1548, 1630, 2041
Tru1I TTAA 3 cut(s) 339, 1511, 2245
Tru9I TTAA 3 cut(s) 339, 1511, 2245
TscAI CASTG 4 cut(s) 13, 915, 1731, 2218
TseFI GTSAC 4 cut(s) 583, 1003, 1887, 2213
TseI GCWGC 7 cut(s) 869, 1026, 1700, 2023, 2056, 2080, 2167
Tsp45I GTSAC 4 cut(s) 583, 1003, 1887, 2213
TspDTI ATGAA 4 cut(s) 419, 1418, 1852, 2204
TspGWI ACGGA 2 cut(s) 472, 1906
TspRI CASTG 4 cut(s) 13, 915, 1731, 2218
VneI GTGCAC 2 cut(s) 1613, 1923
VpaK11BI GGWCC 2 cut(s) 973, 1707
XapI RAATTY 2 cut(s) 341, 360
XceI RCATGY 2 cut(s) 214, 540
XcmI CCANNNNNNNNNTGG 2 cut(s) 1258, 1876
XhoI CTCGAG 2 cut(s) 42, 1947
XmiI GTMKAC 2 cut(s) 1397, 1767
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 4 cut(s) 1787, 1937, 2171, 2238
ZraI GACGTC 1 cut(s) 1018
ZrmI AGTACT 2 cut(s) 249, 271
Zsp2I ATGCAT 2 cut(s) 528, 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.