RchiOBHm_Chr7g0233091

von Willebrand factor type A domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014171
Physical Location & Seq
Reverse (-)
57403489 .. 57407092
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20892

Sequence Viewer

Length: 2256 bp
ATGGGTACTGGTTGGAGACGAGCCTTTTGCACCACGATTCGTCGAGATCCATCAGAACACAGAGTTTCAGATCAAAAGCAGAGAAGCCCGAGTCCGAGTCCGAGCCCGAGCCCTAGAACCCGACTGAGCTTCTTCTCCTCCGGTGGTAGCAACCCGTCAACTCCGAAACTACGTTGTAAAACAGGGTCGGAATCTCTACTTCAGAAATCGAATAGTATGCCTACGAATAATAGTGTTGCCGAGAGCCCGAGGGTCCTTGAAATCAAAACCAGCACTCCCAAATCGTCTAATCCGTCTTCTCCTCGATCCCCTCTCAAGCTCTCCCTCTTCAAGAACAGCTTCAAATTTCGAAGTAGCTGTGGAATTTGCTTGAATAGTGTGAAGACTGGGCAAGGCACAGCGATTTACACAGCAGAGTGTAGTCACGCCTTTCATTTTCCTTGCATAGCTTCTTATGTACGGAAGCATGGAAGCCTTGTCTGCCCAGTTTGCAATTCCACATGGAAAGACGTTCCTTTACTGGCTATGCACAAGAGTCCCAGCCCTGATTCCCACCCGCCAGCCAACGACGCCGTTTCGGCACCTGTCACCCCCAAGCCCAAAGTCGAAGAGAAAAAGGTGTTAGCTGAATCCGCCTCCCCCAGATACACGTTGAAGCCATACGACGACGACGAGCCACTCTTGTCTCCGACCGTCGGCGGCCGGATTATCCCCATTCCCGAGGAGGAGGAGGAGGACGCCGAGGATGACGTCGAAGAGTTCCAGGGCTTTTTCGTCAATCCCAACACTTCCTCTTCCGTCAAGTATTCTGATGATCCTCAGATAAATAATGGCAGAGATTTCAGGAACAATGTGCAGGTCAGGCTGTTACCGGAGGCTGCTTCGCTGTCCTCCGGCCGGGGTTTCGAGACCTACGCCGTGGCTTTGACAGTCAAGGCTCCGCCGGCGCCGGCTCGTCAGACTACCTGCTGCGCGTCGCTTCTGGACCCTTCCCACCGTGCCCCGATCGATTTGGTGACGGTGCTCGACGTCAGCGGCAGCATGACCGGCGGGAAGCTTCAGATGCTGAAACGCGCCATGCGTTTGGTCATATCCTCGCTCGGCTTGGCTGATCGGCTCTCCATCGTGGCTTTCTCGGCTTCGCCAAAGAGACTGATGCCTTTGAAGAGAATGACGGCTCATGGCCAGCGCGCGGCTCGGCGCATCGTTGACCGGCTGGTCTGCGGTCCAGGGAGTAGCGTTGGTGAGGCCTTGATGAAGGCCACGAAGGTTCTGGAAGACCGGAGGGAGAGGAATCCAGTGGCGAGCATCATGCTCTTATCGGACGGTCAGGACGAGAGGGTCAACAACTCCGGCTCAACCAATCAACGTCAGGTCTCAAACGACGTGTCGTCCACCCGGTTCGCCCACATTGAGATTCCGGTTCATGCTTTCGGGTTCGGGCAGAACGCCGGCTACTGCCAGGAGCCGGCTGAGGACGCCTTTGCCAAATGCGTCGGGGGTTTACTAAGCGTCGTGGTTCAGGACTTGAGAGTTCAGCTCGGCTTCTCATCCGGCTCGGCTCCGGCTGAGATAACAGCCATTTATTCCTGCAACGGACGGCCCACCGTGCACGGCTCGTCTTCGATTCGGCTCGGAGATTTGTACGCCGAGGAAGAGAGGGAGTTGCTCGTTGAGCTTCGTATCCCTACATCGGCTGCTGGGACCCACCATGTGATGTCAGTTCGGTGCTTATACAAAGACCCGGCGACGCAAGAAGTTGTCTACGGCAAGGAGCAGGGACTAGTAGTGCCCCTCACGCAGTCAGCCGTCCGATCGGTGTCCTTGAATCCGAAGATCCAACGGTTGAGAAGACTTTTCATGACTACGCGTGCTGTAGCGGAGTCACGGAGGCTGGTTGAGCACAATGACTTCCAAAGTGCACATCACTTGCTAGCATCGACTCGAGCTCTGCTCATGCAGTCCGGCTTGTCTTCGGCTGATGAGTACGTGCGGACATTGGAGGCTCAGCTGGCGGAGTTGCATTGGAAGAGGCAGAATCAGCTGGAGGAGCAGCAGCAGCAGATGATGATAATGCAGCGGCGGAGAGTAGGCGAGAGAGAAATGGCGGCGTCGGCGGCTGTCGATGAAAACGGGGAGCCGCTGACGCCGACTTCGGCGTGGAGAGCCGCGGAGAAGCTGGCTAAGGTAGCTATGATGAAGAAGTCGTTGAATAGGGTCAGTGACTTGCACGGCTTTGAAAATGCTAGGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VWA_2 zf-RING_11 zf-RING_2

Protein Analysis

751

Amino Acids

82.23

Weight (kDa)

9.17

Isoelectric Point (pI)

53.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 119 - 165 6e-09 Ring finger domain
zf-RING_11 PF17123 120 - 149 5.9e-09 RING-like zinc finger
zf-C3HC4 PF00097 120 - 164 2.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 122 - 165 2.6e-06 RING-H2 zinc finger domain
VWA PF00092 337 - 482 3.8e-14 von Willebrand factor type A domain
VWA_3 PF13768 337 - 482 4.3e-11 von Willebrand factor type A domain
VWA_2 PF13519 338 - 444 4.1e-20 von Willebrand factor type A domain
WAV3_C PF25243 610 - 684 1e-34 E3 ubiquitin-protein ligase WAV3-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014171)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49665
fragaria_vesca FvH4_5g33780 FvH4_5g33780
malus_domestica MD08G1207200.v1.1 MD15G1391600.v1.1
prunus_persica Prupe.1G540900_v2.0.a1
pyrus_communis pycom08g17950
rosa_chinensis RchiOBHm_Chr7g0233091
rosa_laevigata RLG00000001300
rosa_multiflora Rmu_sc0016344.1_g000006
rosa_roxburghii Rroxscaffold_3G00227690
rosa_rugosa Rorug07G0278100
rosa_samantha Rh7AG433300 Rh7BG406100 Rh7CG452700 Rh7DG421900
rosa_wichuraiana Rw7G035730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1217, 1340
AatII GACGTC 2 cut(s) 753, 1032
Acc36I ACCTGC 2 cut(s) 847, 974
AccB1I GGYRCC 2 cut(s) 580, 946
AccI GTMKAC 1 cut(s) 1764
AccII CGCG 6 cut(s) 974, 1074, 1191, 1193, 1870, 2171
AclWI GGATC 4 cut(s) 41, 300, 809, 1831
AcoI YGGCCR 3 cut(s) 700, 895, 1183
AcsI RAATTY 2 cut(s) 344, 363
AcuI CTGAAG 2 cut(s) 185, 1043
AcyI GRCGYC 8 cut(s) 570, 738, 750, 947, 1029, 1479, 2111, 2147
AdeI CACNNNGTG 1 cut(s) 1714
AfaI GTAC 4 cut(s) 7, 459, 1646, 1988
AfiI CCNNNNNNNGG 5 cut(s) 695, 897, 1192, 1468, 1693
AflIII ACRYGT 3 cut(s) 648, 1386, 1868
AgsI TTSAA 9 cut(s) 260, 331, 343, 373, 655, 1165, 1828, 2212, 2240
AhdI GACNNNNNGTC 1 cut(s) 1390
AhlI ACTAGT 1 cut(s) 1783
AjiI CACGTC 1 cut(s) 1387
AjnI CCWGG 3 cut(s) 762, 1228, 1461
Alw21I GWGCWC 5 cut(s) 1026, 1614, 1905, 1924, 1951
Alw26I GTCTC 5 cut(s) 10, 690, 902, 1144, 1381
Alw44I GTGCAC 2 cut(s) 1610, 1920
AlwI GGATC 4 cut(s) 41, 300, 809, 1831
AlwNI CAGNNNCTG 1 cut(s) 1066
Ama87I CYCGRG 5 cut(s) 88, 106, 247, 719, 1944
AoxI GGCC 6 cut(s) 700, 895, 1183, 1248, 1260, 1601
ApaLI GTGCAC 2 cut(s) 1610, 1920
ApeKI GCWGC 8 cut(s) 878, 969, 1038, 1697, 2053, 2056, 2059, 2077
ApoI RAATTY 2 cut(s) 344, 363
ArsI GACNNNNNNTTYG 6 cut(s) 9, 41, 1373, 1405, 2137, 2169
Asp700I GAANNNNTTC 1 cut(s) 338
AspLEI GCGC 6 cut(s) 949, 974, 1076, 1191, 1193, 1203
AspS9I GGNCC 5 cut(s) 253, 985, 1226, 1602, 1704
AsuC2I CCSGG 3 cut(s) 899, 1399, 1745
AsuHPI GGTGA 3 cut(s) 580, 1027, 1256
AsuII TTCGAA 1 cut(s) 349
AsuNHI GCTAGC 1 cut(s) 1933
AvaI CYCGRG 5 cut(s) 88, 106, 247, 719, 1944
AvaII GGWCC 4 cut(s) 253, 985, 1226, 1704
BaeGI GKGCMC 4 cut(s) 1003, 1614, 1794, 1924
BalI TGGCCA 1 cut(s) 1185
BanI GGYRCC 2 cut(s) 580, 946
BanII GRGCYC 4 cut(s) 107, 113, 248, 1951
BbsI GAAGAC 6 cut(s) 288, 389, 1284, 1614, 1858, 1965
Bbv12I GWGCWC 5 cut(s) 1026, 1614, 1905, 1924, 1951
BbvCI CCTCAGC 1 cut(s) 1473
BbvI GCAGC 8 cut(s) 865, 956, 1050, 1684, 2065, 2068, 2071, 2089
BccI CCATC 2 cut(s) 58, 1130
BceAI ACGGC 8 cut(s) 557, 902, 1191, 1616, 1630, 1783, 1793, 2248
BcgI CGANNNNNNTGC 6 cut(s) 9, 43, 199, 233, 1294, 1328
BciT130I CCWGG 3 cut(s) 764, 1230, 1463
BciVI GTATCC 1 cut(s) 1694
BcnI CCSGG 3 cut(s) 899, 1399, 1745
BcoDI GTCTC 5 cut(s) 10, 690, 902, 1144, 1381
BcuI ACTAGT 1 cut(s) 1783
BfaI CTAG 4 cut(s) 114, 1784, 1934, 2247
BfmI CTRYAG 1 cut(s) 1875
BfoI RGCGCY 1 cut(s) 950
BfuAI ACCTGC 2 cut(s) 847, 974
BfuI GTATCC 1 cut(s) 1694
BglI GCCNNNNNGGC 1 cut(s) 578
BlpI GCTNAGC 1 cut(s) 2007
Bme1390I CCNGG 6 cut(s) 764, 899, 1230, 1399, 1463, 1745
Bme18I GGWCC 4 cut(s) 253, 985, 1226, 1704
BmeRI GACNNNNNGTC 1 cut(s) 1390
BmeT110I CYCGRG 5 cut(s) 88, 106, 247, 719, 1944
BmgBI CACGTC 1 cut(s) 1387
BmgT120I GGNCC 5 cut(s) 253, 985, 1226, 1602, 1704
BmrFI CCNGG 6 cut(s) 764, 899, 1230, 1399, 1463, 1745
BmrI ACTGGG 2 cut(s) 396, 479
BmsI GCATC 5 cut(s) 1053, 1146, 1212, 1317, 1946
BmtI GCTAGC 1 cut(s) 1937
BmuI ACTGGG 2 cut(s) 396, 479
BpiI GAAGAC 6 cut(s) 288, 389, 1284, 1614, 1858, 1965
BplI GAGNNNNNCTC 4 cut(s) 1524, 1556, 1938, 1970
BpmI CTGGAG 1 cut(s) 2066
Bpu10I CCTNAGC 2 cut(s) 1473, 2184
Bpu1102I GCTNAGC 1 cut(s) 2007
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 2 cut(s) 299, 1549
BpuMI CCSGG 3 cut(s) 899, 1399, 1745
Bsa29I ATCGAT 1 cut(s) 1008
BsaAI YACGTR 1 cut(s) 1990
BsaHI GRCGYC 8 cut(s) 570, 738, 750, 947, 1029, 1479, 2111, 2147
BsaI GGTCTC 2 cut(s) 902, 1381
BsaJI CCNNGG 9 cut(s) 248, 720, 741, 763, 898, 918, 1229, 1650, 2169
BsaWI WCCGGW 4 cut(s) 140, 871, 1281, 1420
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 5 cut(s) 695, 897, 1192, 1468, 1693
Bse118I RCCGGY 6 cut(s) 943, 949, 1046, 1212, 1451, 1468
Bse1I ACTGG 5 cut(s) 13, 391, 485, 525, 1298
BseBI CCWGG 3 cut(s) 764, 1230, 1463
BseCI ATCGAT 1 cut(s) 1008
BseDI CCNNGG 9 cut(s) 248, 720, 741, 763, 898, 918, 1229, 1650, 2169
BseGI GGATG 2 cut(s) 751, 1550
BseLI CCNNNNNNNGG 5 cut(s) 695, 897, 1192, 1468, 1693
BseMII CTCAG 5 cut(s) 116, 833, 1464, 1560, 2021
BseNI ACTGG 5 cut(s) 13, 391, 485, 525, 1298
BsePI GCGCGC 1 cut(s) 1189
BseRI GAGGAG 7 cut(s) 127, 291, 737, 740, 743, 746, 2063
BseSI GKGCMC 4 cut(s) 1003, 1614, 1794, 1924
BseX3I CGGCCG 2 cut(s) 700, 895
BseXI GCAGC 8 cut(s) 865, 956, 1050, 1684, 2065, 2068, 2071, 2089
BseYI CCCAGC 2 cut(s) 539, 1700
BsgI GTGCAG 1 cut(s) 875
Bsh1236I CGCG 6 cut(s) 974, 1074, 1191, 1193, 1870, 2171
Bsh1285I CGRYCG 5 cut(s) 693, 703, 898, 1008, 1817
BshFI GGCC 6 cut(s) 702, 897, 1185, 1250, 1262, 1603
BshNI GGYRCC 2 cut(s) 580, 946
BshVI ATCGAT 1 cut(s) 1008
BsiEI CGRYCG 5 cut(s) 693, 703, 898, 1008, 1817
BsiHKAI GWGCWC 5 cut(s) 1026, 1614, 1905, 1924, 1951
BsiHKCI CYCGRG 5 cut(s) 88, 106, 247, 719, 1944
BslFI GGGAC 3 cut(s) 522, 1717, 1794
BslI CCNNNNNNNGG 5 cut(s) 695, 897, 1192, 1468, 1693
BsmAI GTCTC 5 cut(s) 10, 690, 902, 1144, 1381
BsmBI CGTCTC 1 cut(s) 10
BsmFI GGGAC 3 cut(s) 522, 1717, 1794
BsnI GGCC 6 cut(s) 702, 897, 1185, 1250, 1262, 1603
Bso31I GGTCTC 2 cut(s) 902, 1381
BsoBI CYCGRG 5 cut(s) 88, 106, 247, 719, 1944
Bsp119I TTCGAA 1 cut(s) 349
Bsp143I GATC 8 cut(s) 46, 70, 305, 814, 1005, 1111, 1814, 1836
Bsp1720I GCTNAGC 1 cut(s) 2007
BspANI GGCC 6 cut(s) 702, 897, 1185, 1250, 1262, 1603
BspCNI CTCAG 5 cut(s) 117, 832, 1465, 1561, 2020
BspDI ATCGAT 1 cut(s) 1008
BspFNI CGCG 6 cut(s) 974, 1074, 1191, 1193, 1870, 2171
BspHI TCATGA 1 cut(s) 1860
BspMI ACCTGC 2 cut(s) 847, 974
BspOI GCTAGC 1 cut(s) 1937
BspPI GGATC 4 cut(s) 41, 300, 809, 1831
BspT104I TTCGAA 1 cut(s) 349
BspT107I GGYRCC 2 cut(s) 580, 946
BspTNI GGTCTC 2 cut(s) 902, 1381
BsrFI RCCGGY 6 cut(s) 943, 949, 1046, 1212, 1451, 1468
BsrI ACTGG 5 cut(s) 13, 391, 485, 525, 1298
BssAI RCCGGY 6 cut(s) 943, 949, 1046, 1212, 1451, 1468
BssECI CCNNGG 9 cut(s) 248, 720, 741, 763, 898, 918, 1229, 1650, 2169
BssHII GCGCGC 1 cut(s) 1189
BssMI GATC 8 cut(s) 46, 70, 305, 814, 1005, 1111, 1814, 1836
BssNI GRCGYC 8 cut(s) 570, 738, 750, 947, 1029, 1479, 2111, 2147
Bst2UI CCWGG 3 cut(s) 764, 1230, 1463
Bst4CI ACNGT 7 cut(s) 694, 931, 998, 1021, 1328, 1609, 1845
Bst6I CTCTTC 7 cut(s) 332, 603, 750, 799, 1160, 1650, 2024
BstACI GRCGYC 8 cut(s) 570, 738, 750, 947, 1029, 1479, 2111, 2147
BstBAI YACGTR 1 cut(s) 1990
BstBI TTCGAA 1 cut(s) 349
BstDEI CTNAG 7 cut(s) 125, 819, 1473, 1508, 1569, 2007, 2184
BstDSI CCRYGG 2 cut(s) 918, 2169
BstF5I GGATG 2 cut(s) 751, 1550
BstFNI CGCG 6 cut(s) 974, 1074, 1191, 1193, 1870, 2171
BstH2I RGCGCY 1 cut(s) 950
BstHHI GCGC 6 cut(s) 949, 974, 1076, 1191, 1193, 1203
BstKTI GATC 8 cut(s) 49, 73, 308, 817, 1008, 1114, 1817, 1839
BstMAI GTCTC 5 cut(s) 10, 690, 902, 1144, 1381
BstMBI GATC 8 cut(s) 46, 70, 305, 814, 1005, 1111, 1814, 1836
BstMCI CGRYCG 5 cut(s) 693, 703, 898, 1008, 1817
BstNI CCWGG 3 cut(s) 764, 1230, 1463
BstSCI CCNGG 6 cut(s) 762, 897, 1228, 1397, 1461, 1743
BstSFI CTRYAG 1 cut(s) 1875
BstSLI GKGCMC 4 cut(s) 1003, 1614, 1794, 1924
BstUI CGCG 6 cut(s) 974, 1074, 1191, 1193, 1870, 2171
BstV1I GCAGC 8 cut(s) 865, 956, 1050, 1684, 2065, 2068, 2071, 2089
BstV2I GAAGAC 6 cut(s) 288, 389, 1284, 1614, 1858, 1965
BstX2I RGATCY 2 cut(s) 46, 1836
BstXI CCANNNNNNTGG 1 cut(s) 1084
BstYI RGATCY 2 cut(s) 46, 1836
BstZI CGGCCG 2 cut(s) 700, 895
Bsu15I ATCGAT 1 cut(s) 1008
BsuI GTATCC 1 cut(s) 1694
BsuRI GGCC 6 cut(s) 702, 897, 1185, 1250, 1262, 1603
BsuTUI ATCGAT 1 cut(s) 1008
BtgI CCRYGG 2 cut(s) 918, 2169
BtrI CACGTC 1 cut(s) 1387
BtsCI GGATG 2 cut(s) 751, 1550
BtsIMutI CAGTG 2 cut(s) 1305, 2227
BveI ACCTGC 2 cut(s) 847, 974
CaiI CAGNNNCTG 1 cut(s) 1066
CciI TCATGA 1 cut(s) 1860
CfoI GCGC 6 cut(s) 949, 974, 1076, 1191, 1193, 1203
Cfr10I RCCGGY 6 cut(s) 943, 949, 1046, 1212, 1451, 1468
Cfr13I GGNCC 5 cut(s) 253, 985, 1226, 1602, 1704
Cfr42I CCGCGG 1 cut(s) 2172
ClaI ATCGAT 1 cut(s) 1008
CseI GACGC 9 cut(s) 578, 746, 963, 1483, 1487, 1501, 1759, 2100, 2155
Csp6I GTAC 4 cut(s) 6, 458, 1645, 1987
CviQI GTAC 4 cut(s) 6, 458, 1645, 1987
DdeI CTNAG 7 cut(s) 125, 819, 1473, 1508, 1569, 2007, 2184
DinI GGCGCC 1 cut(s) 948
DpnI GATC 8 cut(s) 48, 72, 307, 816, 1007, 1113, 1816, 1838
DpnII GATC 8 cut(s) 46, 70, 305, 814, 1005, 1111, 1814, 1836
DraIII CACNNNGTG 1 cut(s) 1714
DrdI GACNNNNNNGTC 2 cut(s) 1217, 1340
DriI GACNNNNNGTC 1 cut(s) 1390
DseDI GACNNNNNNGTC 2 cut(s) 1217, 1340
EaeI YGGCCR 3 cut(s) 700, 895, 1183
EagI CGGCCG 2 cut(s) 700, 895
Eam1104I CTCTTC 7 cut(s) 332, 603, 750, 799, 1160, 1650, 2024
Eam1105I GACNNNNNGTC 1 cut(s) 1390
EarI CTCTTC 7 cut(s) 332, 603, 750, 799, 1160, 1650, 2024
EciI GGCGGA 4 cut(s) 622, 930, 2030, 2098
Ecl136II GAGCTC 1 cut(s) 1949
EclXI CGGCCG 2 cut(s) 700, 895
Eco147I AGGCCT 1 cut(s) 1250
Eco24I GRGCYC 4 cut(s) 107, 113, 248, 1951
Eco31I GGTCTC 2 cut(s) 902, 1381
Eco47I GGWCC 4 cut(s) 253, 985, 1226, 1704
Eco52I CGGCCG 2 cut(s) 700, 895
Eco53kI GAGCTC 1 cut(s) 1949
Eco57I CTGAAG 2 cut(s) 185, 1043
Eco88I CYCGRG 5 cut(s) 88, 106, 247, 719, 1944
EcoICRI GAGCTC 1 cut(s) 1949
EcoO109I RGGNCCY 2 cut(s) 253, 1704
EcoRII CCWGG 3 cut(s) 762, 1228, 1461
EcoT38I GRGCYC 4 cut(s) 107, 113, 248, 1951
EgeI GGCGCC 1 cut(s) 948
EheI GGCGCC 1 cut(s) 948
Esp3I CGTCTC 1 cut(s) 10
FalI AAGNNNNNCTT 2 cut(s) 323, 355
FaqI GGGAC 3 cut(s) 522, 1717, 1794
FauI CCCGC 2 cut(s) 564, 1043
FblI GTMKAC 1 cut(s) 1764
FokI GGATG 2 cut(s) 758, 1537
FriOI GRGCYC 4 cut(s) 107, 113, 248, 1951
FspBI CTAG 4 cut(s) 114, 1784, 1934, 2247
GlaI GCGC 6 cut(s) 948, 973, 1075, 1190, 1192, 1202
GsaI CCCAGC 2 cut(s) 543, 1704
GsuI CTGGAG 1 cut(s) 2066
HaeII RGCGCY 1 cut(s) 950
HaeIII GGCC 6 cut(s) 702, 897, 1185, 1250, 1262, 1603
HgaI GACGC 9 cut(s) 578, 746, 963, 1483, 1487, 1501, 1759, 2100, 2155
HhaI GCGC 6 cut(s) 949, 974, 1076, 1191, 1193, 1203
Hin1I GRCGYC 8 cut(s) 570, 738, 750, 947, 1029, 1479, 2111, 2147
Hin6I GCGC 6 cut(s) 947, 972, 1074, 1189, 1191, 1201
HinP1I GCGC 6 cut(s) 947, 972, 1074, 1189, 1191, 1201
HincII GTYRAC 3 cut(s) 159, 1210, 1345
HindII GTYRAC 3 cut(s) 159, 1210, 1345
HindIII AAGCTT 1 cut(s) 1055
HphI GGTGA 3 cut(s) 580, 1027, 1256
Hpy166II GTNNAC 8 cut(s) 159, 1210, 1345, 1395, 1505, 1612, 1765, 1922
Hpy8I GTNNAC 8 cut(s) 159, 1210, 1345, 1395, 1505, 1612, 1765, 1922
HpyAV CCTTC 3 cut(s) 999, 1252, 1261
HpyCH4III ACNGT 7 cut(s) 694, 931, 998, 1021, 1328, 1609, 1845
HpyCH4IV ACGT 8 cut(s) 172, 510, 650, 750, 1029, 1369, 1386, 1989
HpyF3I CTNAG 7 cut(s) 125, 819, 1473, 1508, 1569, 2007, 2184
HpySE526I ACGT 8 cut(s) 172, 510, 650, 750, 1029, 1369, 1386, 1989
Hsp92I GRCGYC 8 cut(s) 570, 738, 750, 947, 1029, 1479, 2111, 2147
HspAI GCGC 6 cut(s) 947, 972, 1074, 1189, 1191, 1201
KasI GGCGCC 1 cut(s) 946
KflI GGGWCCC 1 cut(s) 1704
KroI GCCGGC 4 cut(s) 943, 949, 1451, 1468
KroNI GCCGGC 4 cut(s) 945, 951, 1453, 1470
KspI CCGCGG 1 cut(s) 2172
Kzo9I GATC 8 cut(s) 46, 70, 305, 814, 1005, 1111, 1814, 1836
LmnI GCTCC 6 cut(s) 943, 1465, 1567, 1774, 2050, 2137
Lsp1109I GCAGC 8 cut(s) 865, 956, 1050, 1684, 2065, 2068, 2071, 2089
LweI GCATC 5 cut(s) 1053, 1146, 1212, 1317, 1946
MaeI CTAG 4 cut(s) 114, 1784, 1934, 2247
MaeII ACGT 8 cut(s) 172, 510, 650, 750, 1029, 1369, 1386, 1989
MaeIII GTNAC 6 cut(s) 422, 586, 867, 1015, 1884, 2222
MalI GATC 8 cut(s) 48, 72, 307, 816, 1007, 1113, 1816, 1838
MboI GATC 8 cut(s) 46, 70, 305, 814, 1005, 1111, 1814, 1836
MflI RGATCY 2 cut(s) 46, 1836
MlsI TGGCCA 1 cut(s) 1185
MluCI AATT 3 cut(s) 344, 363, 493
MluI ACGCGT 1 cut(s) 1868
MluNI TGGCCA 1 cut(s) 1185
Mly113I GGCGCC 1 cut(s) 947
MlyI GAGTC 5 cut(s) 100, 106, 544, 1892, 1936
MmeI TCCRAC 3 cut(s) 168, 713, 1864
Mox20I TGGCCA 1 cut(s) 1185
MreI CGCCGGCG 1 cut(s) 943
MroNI GCCGGC 4 cut(s) 943, 949, 1451, 1468
MroXI GAANNNNTTC 1 cut(s) 338
MscI TGGCCA 1 cut(s) 1185
MseI TTAA 1 cut(s) 2254
Msp20I TGGCCA 1 cut(s) 1185
MspA1I CMGCKG 6 cut(s) 1035, 2011, 2044, 2080, 2143, 2171
MspR9I CCNGG 6 cut(s) 764, 899, 1230, 1399, 1463, 1745
MvaI CCWGG 3 cut(s) 764, 1230, 1463
MvnI CGCG 6 cut(s) 974, 1074, 1191, 1193, 1870, 2171
NaeI GCCGGC 4 cut(s) 945, 951, 1453, 1470
NarI GGCGCC 1 cut(s) 947
NciI CCSGG 3 cut(s) 899, 1399, 1745
NdeII GATC 8 cut(s) 46, 70, 305, 814, 1005, 1111, 1814, 1836
NgoMIV GCCGGC 4 cut(s) 943, 949, 1451, 1468
NheI GCTAGC 1 cut(s) 1933
NmeAIII GCCGAG 8 cut(s) 265, 766, 1080, 1115, 1177, 1521, 1538, 1675
NmuCI GTSAC 5 cut(s) 422, 586, 1015, 1884, 2222
NspV TTCGAA 1 cut(s) 349
PaeR7I CTCGAG 1 cut(s) 1944
PagI TCATGA 1 cut(s) 1860
PauI GCGCGC 1 cut(s) 1189
PceI AGGCCT 1 cut(s) 1250
PcsI WCGNNNNNNNCGW 4 cut(s) 290, 669, 1078, 1332
PdiI GCCGGC 4 cut(s) 945, 951, 1453, 1470
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 9 cut(s) 37, 191, 548, 629, 1294, 1417, 1627, 1828, 2038
Ple19I CGATCG 2 cut(s) 1008, 1817
PleI GAGTC 5 cut(s) 99, 105, 543, 1891, 1936
PluTI GGCGCC 1 cut(s) 950
PpsI GAGTC 5 cut(s) 99, 105, 543, 1891, 1936
Ppu21I YACGTR 1 cut(s) 1990
PpuMI RGGWCCY 2 cut(s) 253, 1704
Psp124BI GAGCTC 1 cut(s) 1951
Psp5II RGGWCCY 2 cut(s) 253, 1704
Psp6I CCWGG 3 cut(s) 762, 1228, 1461
PspFI CCCAGC 2 cut(s) 539, 1700
PspGI CCWGG 3 cut(s) 762, 1228, 1461
PspPI GGNCC 5 cut(s) 253, 985, 1226, 1602, 1704
PspPPI RGGWCCY 2 cut(s) 253, 1704
PspXI VCTCGAGB 1 cut(s) 1944
PsrI GAACNNNNNNTAC 2 cut(s) 1439, 1471
PstNI CAGNNNCTG 1 cut(s) 1066
PsuI RGATCY 2 cut(s) 46, 1836
PteI GCGCGC 1 cut(s) 1189
PvuI CGATCG 2 cut(s) 1008, 1817
PvuII CAGCTG 2 cut(s) 2011, 2044
RsaI GTAC 4 cut(s) 7, 459, 1646, 1988
RsaNI GTAC 4 cut(s) 6, 458, 1645, 1987
SacI GAGCTC 1 cut(s) 1951
SacII CCGCGG 1 cut(s) 2172
SaqAI TTAA 1 cut(s) 2254
Sau3AI GATC 8 cut(s) 46, 70, 305, 814, 1005, 1111, 1814, 1836
Sau96I GGNCC 5 cut(s) 253, 985, 1226, 1602, 1704
SchI GAGTC 5 cut(s) 100, 106, 544, 1892, 1936
ScrFI CCNGG 6 cut(s) 764, 899, 1230, 1399, 1463, 1745
SfaNI GCATC 5 cut(s) 1053, 1146, 1212, 1317, 1946
SfcI CTRYAG 1 cut(s) 1875
SfoI GGCGCC 1 cut(s) 948
Sfr274I CTCGAG 1 cut(s) 1944
Sfr303I CCGCGG 1 cut(s) 2172
SfuI TTCGAA 1 cut(s) 349
SgrAI CRCCGGYG 1 cut(s) 943
SgrBI CCGCGG 1 cut(s) 2172
SinI GGWCC 4 cut(s) 253, 985, 1226, 1704
SlaI CTCGAG 1 cut(s) 1944
SmlI CTYRAG 3 cut(s) 314, 1528, 1944
SmoI CTYRAG 3 cut(s) 314, 1528, 1944
SpeI ACTAGT 1 cut(s) 1783
Sse9I AATT 3 cut(s) 344, 363, 493
SseBI AGGCCT 1 cut(s) 1250
SspDI GGCGCC 1 cut(s) 946
SspMI CTAG 4 cut(s) 114, 1784, 1934, 2247
SstI GAGCTC 1 cut(s) 1951
StuI AGGCCT 1 cut(s) 1250
StyD4I CCNGG 6 cut(s) 762, 897, 1228, 1397, 1461, 1743
TaaI ACNGT 7 cut(s) 694, 931, 998, 1021, 1328, 1609, 1845
TaiI ACGT 8 cut(s) 175, 513, 653, 753, 1032, 1372, 1389, 1992
TasI AATT 3 cut(s) 344, 363, 493
TauI GCSGC 8 cut(s) 702, 1038, 1196, 2083, 2111, 2120, 2143, 2171
TfiI GAWTC 9 cut(s) 37, 191, 548, 629, 1294, 1417, 1627, 1828, 2038
Tru1I TTAA 1 cut(s) 2254
Tru9I TTAA 1 cut(s) 2254
TscAI CASTG 2 cut(s) 1305, 2227
TseFI GTSAC 5 cut(s) 422, 586, 1015, 1884, 2222
TseI GCWGC 8 cut(s) 878, 969, 1038, 1697, 2053, 2056, 2059, 2077
Tsp45I GTSAC 5 cut(s) 422, 586, 1015, 1884, 2222
TspDTI ATGAA 6 cut(s) 422, 1271, 1415, 1849, 2142, 2213
TspGWI ACGGA 5 cut(s) 282, 475, 787, 1611, 1903
TspRI CASTG 2 cut(s) 1305, 2227
VneI GTGCAC 2 cut(s) 1610, 1920
VpaK11BI GGWCC 4 cut(s) 253, 985, 1226, 1704
XapI RAATTY 2 cut(s) 344, 363
XcmI CCANNNNNNNNNTGG 1 cut(s) 1270
XhoI CTCGAG 1 cut(s) 1944
XmiI GTMKAC 1 cut(s) 1764
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 4 cut(s) 114, 1784, 1934, 2247
ZraI GACGTC 2 cut(s) 751, 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.