Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Forward (+)

26634376 .. 26638943

Gene Structure 4568 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0278100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACATTACCTCGCCCTCTGTTCTCAAAACCCATCAGCAGAACAGCACCACCACCACTTCTGATCACAACTTCAAAACCCAATACACACTTGAATGGCTTCTCTGCTTTCAATCCTCATGCTCTCAAGTTCATCGTCTCCATGGCTGCAAGCCCCGGACCCGGCATTTCTTCCGCCCCACAGCACTCCTCGTCGCCGCTGATCCCTTCCACCATCGCCTCCGACTCCGGCGCCTCGCAGAAGTCACCTAGTGTACTAGAGGCCATTGAGGCAGACTTGGAGAAGGTTATCTATGGATGTCGGTTCATGGCGTTTATGGCGGTTTTGGGGTCTTTGATTGGATCGCTTCTGTGTTACATCAAGGGCTGCACTTATGTTGTACAATCTTTCATGGAATACTTTGCACATCGTAGTAAGGTCATCTTGTTGCTGATTGATGCCATTGTGATGTTGGTGTTTGGAATGGGTCTTTATGAGCTATTCATCAGCAACCTCGACAAGGTGAATTCTCTCTCAGAGGATGAAGCATGTACATCGAGTCTTTTTGGCATGTTCATTATGAAGGCACGACCAAAGTGGTTAGATATAACAACCGTCAATGAACTGAAAACGAAGATTGGCCATGTAATTGTAATGCTCCTTTTAATCGGGTTGTTAGAGAAGAGTATGTTAGCAGTTATTCAATCTCCTCTCGACTTGCTTTGCTTTTCAGCCTCTGTCCTCCTCTCCTCTGGTTGCCTCCTTTTACTTTCTAAGCTCAAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

255

Amino Acids

27.56

Weight (kDa)

8.5

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UPF0114	PF03350	97 - 221	1.5e-26	Uncharacterized protein family, UPF0114

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	3 cut(s)	174, 197, 320
AclWI	GGATC	2 cut(s)	196, 349
AcoI	YGGCCR	1 cut(s)	619
AcsI	RAATTY	1 cut(s)	505
AcyI	GRCGYC	1 cut(s)	231
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	255, 381, 532
AfiI	CCNNNNNNNGG	2 cut(s)	161, 499
AgsI	TTSAA	4 cut(s)	75, 94, 112, 683
AluBI	AGCT	2 cut(s)	478, 757
AluI	AGCT	2 cut(s)	478, 757
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	2 cut(s)	196, 349
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	2 cut(s)	261, 619
ApeKI	GCWGC	2 cut(s)	146, 366
ApoI	RAATTY	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	2 cut(s)	156, 162
AsuHPI	GGTGA	2 cut(s)	237, 514
AvaII	GGWCC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	621
BanI	GGYRCC	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	133, 353
BccI	CCATC	2 cut(s)	41, 221
BcgI	CGANNNNNNTGC	2 cut(s)	516, 550
BclI	TGATCA	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	156, 162
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	2 cut(s)	249, 257
BfoI	RGCGCY	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	147, 197, 367
BlsI	GCNGC	3 cut(s)	148, 198, 368
Bme1390I	CCNGG	2 cut(s)	156, 162
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	2 cut(s)	160, 232
BmrFI	CCNGG	2 cut(s)	156, 162
BmsI	GCATC	1 cut(s)	427
BpuEI	CTTGAG	2 cut(s)	110, 743
BpuMI	CCSGG	2 cut(s)	156, 162
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	141, 154
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 499
BseDI	CCNNGG	2 cut(s)	141, 154
BseGI	GGATG	2 cut(s)	302, 526
BseLI	CCNNNNNNNGG	2 cut(s)	161, 499
BseMII	CTCAG	1 cut(s)	528
BseRI	GAGGAG	4 cut(s)	178, 678, 713, 718
BseXI	GCAGC	2 cut(s)	133, 353
BsgI	GTGCAG	1 cut(s)	352
BshFI	GGCC	2 cut(s)	263, 621
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	156, 162, 228
BslI	CCNNNNNNNGG	2 cut(s)	161, 499
BsmAI	GTCTC	1 cut(s)	142
BsmBI	CGTCTC	1 cut(s)	142
BsnI	GGCC	2 cut(s)	263, 621
Bsp1407I	TGTACA	2 cut(s)	379, 530
Bsp143I	GATC	3 cut(s)	63, 201, 341
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	3 cut(s)	174, 197, 320
BspANI	GGCC	2 cut(s)	263, 621
BspCNI	CTCAG	1 cut(s)	527
BspLI	GGNNCC	2 cut(s)	160, 232
BspPI	GGATC	2 cut(s)	196, 349
BspT107I	GGYRCC	1 cut(s)	230
BsrGI	TGTACA	2 cut(s)	379, 530
BssECI	CCNNGG	2 cut(s)	141, 154
BssMI	GATC	3 cut(s)	63, 201, 341
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	1 cut(s)	656
BstACI	GRCGYC	1 cut(s)	231
BstAUI	TGTACA	2 cut(s)	379, 530
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	514, 753
BstDSI	CCRYGG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	497
BstF5I	GGATG	2 cut(s)	302, 526
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	3 cut(s)	66, 204, 344
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	3 cut(s)	63, 201, 341
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 317
BstNSI	RCATGY	2 cut(s)	531, 553
BstSCI	CCNGG	2 cut(s)	154, 160
BstV1I	GCAGC	2 cut(s)	133, 353
BsuRI	GGCC	2 cut(s)	263, 621
BtgI	CCRYGG	1 cut(s)	141
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	302, 526
Cac8I	GCNNGC	1 cut(s)	151
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	158
Csp6I	GTAC	3 cut(s)	254, 380, 531
CviAII	CATG	7 cut(s)	119, 142, 307, 391, 528, 550, 623
CviJI	RGCY	9 cut(s)	99, 146, 153, 263, 366, 478, 621, 713, 757
CviKI_1	RGCY	9 cut(s)	99, 146, 153, 263, 366, 478, 621, 713, 757
CviQI	GTAC	3 cut(s)	254, 380, 531
DdeI	CTNAG	2 cut(s)	514, 753
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	3 cut(s)	65, 203, 343
DpnII	GATC	3 cut(s)	63, 201, 341
DraIII	CACNNNGTG	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
EciI	GGCGGA	1 cut(s)	163
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	505
EcoT14I	CCWWGG	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	142
FaeI	CATG	7 cut(s)	122, 145, 310, 394, 531, 553, 626
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	7 cut(s)	118, 141, 306, 390, 527, 549, 622
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	147, 197, 367
FokI	GGATG	2 cut(s)	309, 533
Fsp4HI	GCNGC	3 cut(s)	147, 197, 367
FspBI	CTAG	2 cut(s)	249, 257
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	3 cut(s)	147, 197, 367
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	263, 621
HapII	CCGG	3 cut(s)	156, 162, 228
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	7 cut(s)	122, 145, 310, 394, 531, 553, 626
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	224, 538
HpaII	CCGG	3 cut(s)	156, 162, 228
HphI	GGTGA	2 cut(s)	237, 514
Hpy166II	GTNNAC	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	63, 223, 517
Hpy188III	TCNNGA	1 cut(s)	692
Hpy8I	GTNNAC	1 cut(s)	254
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	3 cut(s)	216, 277, 556
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	3 cut(s)	149, 369, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 317
HpyF3I	CTNAG	2 cut(s)	514, 753
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	7 cut(s)	122, 145, 310, 394, 531, 553, 626
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 201, 341
LmnI	GCTCC	1 cut(s)	642
LpnPI	CCDG	4 cut(s)	169, 175, 241, 717
Lsp1109I	GCAGC	2 cut(s)	133, 353
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	249, 257
MaeIII	GTNAC	2 cut(s)	243, 353
MalI	GATC	3 cut(s)	65, 203, 343
MboI	GATC	3 cut(s)	63, 201, 341
MboII	GAAGA	3 cut(s)	162, 625, 673
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	2 cut(s)	505, 627
MluNI	TGGCCA	1 cut(s)	621
Mly113I	GGCGCC	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	218, 547
MmeI	TCCRAC	1 cut(s)	246
Mox20I	TGGCCA	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	2 cut(s)	93, 446
Msp20I	TGGCCA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	3 cut(s)	156, 162, 228
MspR9I	CCNGG	2 cut(s)	156, 162
MwoI	GCNNNNNNNGC	2 cut(s)	269, 317
NarI	GGCGCC	1 cut(s)	231
NciI	CCSGG	2 cut(s)	156, 162
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	3 cut(s)	63, 201, 341
NlaIII	CATG	7 cut(s)	122, 145, 310, 394, 531, 553, 626
NlaIV	GGNNCC	2 cut(s)	160, 232
NmuCI	GTSAC	1 cut(s)	243
NspI	RCATGY	2 cut(s)	531, 553
PdmI	GAANNNNTTC	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	148, 198, 368
PleI	GAGTC	2 cut(s)	218, 546
PluTI	GGCGCC	1 cut(s)	234
PpsI	GAGTC	2 cut(s)	218, 546
PspN4I	GGNNCC	2 cut(s)	160, 232
PspPI	GGNCC	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	716
RsaI	GTAC	3 cut(s)	255, 381, 532
RsaNI	GTAC	3 cut(s)	254, 380, 531
RseI	CAYNNNNRTG	2 cut(s)	93, 446
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	3 cut(s)	147, 197, 367
Sau3AI	GATC	3 cut(s)	63, 201, 341
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	2 cut(s)	218, 547
ScrFI	CCNGG	2 cut(s)	156, 162
SetI	ASST	8 cut(s)	13, 250, 288, 420, 480, 495, 504, 759
SfaNI	GCATC	1 cut(s)	427
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	2 cut(s)	93, 446
SmlI	CTYRAG	2 cut(s)	125, 758
SmoI	CTYRAG	2 cut(s)	125, 758
Sse9I	AATT	2 cut(s)	505, 627
SsiI	CCGC	3 cut(s)	174, 197, 320
SspDI	GGCGCC	1 cut(s)	230
SspMI	CTAG	2 cut(s)	249, 257
StyD4I	CCNGG	2 cut(s)	154, 160
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	3 cut(s)	495, 536, 693
TasI	AATT	2 cut(s)	505, 627
TatI	WGTACW	3 cut(s)	253, 379, 530
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	2 cut(s)	146, 366
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	8 cut(s)	121, 295, 379, 472, 537, 544, 575, 615
VpaK11BI	GGWCC	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	497
XapI	RAATTY	1 cut(s)	505
XceI	RCATGY	2 cut(s)	531, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	2 cut(s)	249, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.