Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004911

Physical Location & Seq

Genomic Coordinates Forward (+)

9636346 .. 9638761

Gene Structure 2416 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G22670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTCTTATCGATTGCTAAGTGTGGATAAGGATGAACTGGTTACGTCACCTTGTTTGAAAGAACGTAACTACTTGGGTCTCTCTGATTGTTCCTCTGTTGATAGCTCAACTATTCCCAATGTTGTTGGGAAGAGCAATCTCAATTTCAAAGCTACTGAACTGAGGCTAGGTCTTCCTGAGTCTCAATCTCCTGAGAGAGAGACTGATTTCGGTTTGCTGAGTCCGAGAACACCCGATGAGAAGCTTCTCTTCCCGTTGCTACCTTCTAAAGACAATGGTTCTGCTACTACAGGGCATAAGAATGTTGTTTCTGGTAACAAGAGAGGATTTGCTGACACTTGGGATGAGTTTTCGGGTGTGAAAGGATCTGTTAGACCTGGAGGAGGAATCAACATGATGTTGTCGCCGAAAGTTAAGGATGTCTCGAAGAGTATTCAAGAAGAAAGATCTCATGCTAAGGGTGGCTTGAACAATGCACCAGCTGCCAAGGCACAGGTTGTTGGTTGGCCTCCAATCAGATCATACCGGAAGAATACAATGGCTTCTTCTACTTCGAAGAACACTGATGAGGTTGATGGGAAACCTGGTCTTGGTGTTCTGTTTGTGAAGGTGAGCATGGATGGTGCTCCGTATCTGAGAAAGGTCGACTTGAGAACTTACACTTCCTATCAACAGTTGTCTTCTGCACTTGAGAAAATGTTCAGCTGCTTCACCCTTGGTCAATGTGGTCTTCATGGTGCTCAAGGGAGGGAAAGAATGAGCGAGATTAAACTGAAGGATCTTCTTCATGGATCAGAATTTGTGCTTACTTATGAAGATAAAGACGGTGATTGGATGCTTGTTGGCGATGTTCCATGGGAGATATTTACTGAAACATGCCAGAAACTGAAGATCATGAAGGGTTCTGATTCTATTGGCTTAGCTCCAGGTGCAGTGGAGAAATCGAAGAACAAAGAGCGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:1901332 GO:2000023 GO:2000026 GO:2000069 GO:2000280

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA

Protein Analysis

321

Amino Acids

35.12

Weight (kDa)

8.64

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AUX_IAA	PF02309	51 - 308	8.5e-86	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004911)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22670 AT2G22670 AT2G22670 AT2G22670 AT2G22670
fragaria_vesca	FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790 FvH4_5g33790
malus_domestica	MD08G1207300.v1.1 MD15G1391700.v1.1
prunus_persica	Prupe.1G540700_v2.0.a1
pyrus_communis	pycom08g17960 pycom15g35260
rosa_chinensis	RchiOBHm_Chr7g0233101
rosa_laevigata	RLG00000001299
rosa_multiflora	Rmu_co8377091.1_g000001 Rmu_sc0001362.1_g000019
rosa_roxburghii	Rroxscaffold_3G00227660
rosa_rugosa	Rorug07G0278100 Rorug07G0278200
rosa_samantha	Rh7AG433600 Rh7BG406400 Rh7CG452800 Rh7DG422000
rosa_wichuraiana	Rw7G035740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	958
AccI	GTMKAC	1 cut(s)	645
AciI	CCGC	1 cut(s)	958
AclWI	GGATC	3 cut(s)	373, 786, 799
AcsI	RAATTY	1 cut(s)	797
AcuI	CTGAAG	2 cut(s)	794, 908
AfiI	CCNNNNNNNGG	2 cut(s)	383, 590
AgsI	TTSAA	4 cut(s)	58, 148, 437, 469
AjnI	CCWGG	3 cut(s)	376, 583, 925
AluBI	AGCT	6 cut(s)	105, 152, 244, 482, 705, 923
AluI	AGCT	6 cut(s)	105, 152, 244, 482, 705, 923
Alw21I	GWGCWC	2 cut(s)	628, 742
Alw26I	GTCTC	4 cut(s)	83, 186, 194, 427
AlwI	GGATC	3 cut(s)	373, 786, 799
AlwNI	CAGNNNCTG	1 cut(s)	886
AoxI	GGCC	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	482, 705
ApoI	RAATTY	1 cut(s)	797
Asp700I	GAANNNNTTC	1 cut(s)	698
AsuHPI	GGTGA	4 cut(s)	39, 622, 703, 839
AsuII	TTCGAA	1 cut(s)	554
BbsI	GAAGAC	3 cut(s)	164, 672, 722
Bbv12I	GWGCWC	2 cut(s)	628, 742
BbvI	GCAGC	2 cut(s)	469, 692
BccI	CCATC	2 cut(s)	569, 614
BciT130I	CCWGG	3 cut(s)	378, 585, 927
BcoDI	GTCTC	4 cut(s)	83, 186, 194, 427
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	288
BglII	AGATCT	1 cut(s)	446
BisI	GCNGC	2 cut(s)	483, 706
BlpI	GCTNAGC	1 cut(s)	919
BlsI	GCNGC	2 cut(s)	484, 707
Bme1390I	CCNGG	3 cut(s)	378, 585, 927
BmrFI	CCNGG	3 cut(s)	378, 585, 927
BmsI	GCATC	1 cut(s)	825
BpiI	GAAGAC	3 cut(s)	164, 672, 722
BpmI	CTGGAG	2 cut(s)	399, 909
Bpu10I	CCTNAGC	1 cut(s)	456
Bpu1102I	GCTNAGC	1 cut(s)	919
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	3 cut(s)	670, 710, 726
Bsa29I	ATCGAT	1 cut(s)	10
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	3 cut(s)	486, 715, 854
BsaWI	WCCGGW	1 cut(s)	525
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 590
Bse1I	ACTGG	1 cut(s)	42
BseBI	CCWGG	3 cut(s)	378, 585, 927
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	3 cut(s)	486, 715, 854
BseGI	GGATG	5 cut(s)	37, 349, 424, 625, 840
BseLI	CCNNNNNNNGG	2 cut(s)	383, 590
BseMII	CTCAG	5 cut(s)	152, 168, 183, 209, 626
BseNI	ACTGG	1 cut(s)	42
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	469, 692
BsgI	GTGCAG	2 cut(s)	669, 951
BshFI	GGCC	1 cut(s)	508
BshVI	ATCGAT	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	628, 742
BsiSI	CCGG	1 cut(s)	526
BslI	CCNNNNNNNGG	2 cut(s)	383, 590
BsmAI	GTCTC	4 cut(s)	83, 186, 194, 427
BsnI	GGCC	1 cut(s)	508
Bso31I	GGTCTC	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1286I	GDGCHC	2 cut(s)	628, 742
Bsp143I	GATC	6 cut(s)	365, 446, 518, 778, 791, 891
Bsp1720I	GCTNAGC	1 cut(s)	919
Bsp19I	CCATGG	1 cut(s)	854
BspACI	CCGC	1 cut(s)	958
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	5 cut(s)	153, 169, 184, 210, 627
BspDI	ATCGAT	1 cut(s)	10
BspHI	TCATGA	1 cut(s)	894
BspPI	GGATC	3 cut(s)	373, 786, 799
BspQI	GCTCTTC	1 cut(s)	125
BspT104I	TTCGAA	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	83
BsrBI	CCGCTC	1 cut(s)	958
BsrI	ACTGG	1 cut(s)	42
BssECI	CCNNGG	3 cut(s)	486, 715, 854
BssMI	GATC	6 cut(s)	365, 446, 518, 778, 791, 891
BssT1I	CCWWGG	3 cut(s)	486, 715, 854
Bst2UI	CCWGG	3 cut(s)	378, 585, 927
Bst4CI	ACNGT	2 cut(s)	675, 827
Bst6I	CTCTTC	3 cut(s)	125, 254, 422
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstBI	TTCGAA	1 cut(s)	554
BstDEI	CTNAG	8 cut(s)	17, 161, 177, 192, 218, 456, 635, 919
BstDSI	CCRYGG	1 cut(s)	854
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstF5I	GGATG	5 cut(s)	37, 349, 424, 625, 840
BstKTI	GATC	6 cut(s)	368, 449, 521, 781, 794, 894
BstMAI	GTCTC	4 cut(s)	83, 186, 194, 427
BstMBI	GATC	6 cut(s)	365, 446, 518, 778, 791, 891
BstMWI	GCNNNNNNNGC	3 cut(s)	482, 488, 929
BstNI	CCWGG	3 cut(s)	378, 585, 927
BstNSI	RCATGY	1 cut(s)	879
BstSCI	CCNGG	3 cut(s)	376, 583, 925
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	469, 692
BstV2I	GAAGAC	3 cut(s)	164, 672, 722
BstX2I	RGATCY	3 cut(s)	365, 446, 778
BstYI	RGATCY	3 cut(s)	365, 446, 778
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	1 cut(s)	508
BsuTUI	ATCGAT	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	854
BtgZI	GCGATG	1 cut(s)	861
BtsCI	GGATG	5 cut(s)	37, 349, 424, 625, 840
BtsI	GCAGTG	1 cut(s)	939
BtsIMutI	CAGTG	2 cut(s)	561, 939
CaiI	CAGNNNCTG	1 cut(s)	886
CciI	TCATGA	1 cut(s)	894
ClaI	ATCGAT	1 cut(s)	10
CsiI	ACCWGGT	1 cut(s)	583
CviAII	CATG	8 cut(s)	394, 452, 616, 734, 788, 855, 876, 895
DdeI	CTNAG	8 cut(s)	17, 161, 177, 192, 218, 456, 635, 919
DpnI	GATC	6 cut(s)	367, 448, 520, 780, 793, 893
DpnII	GATC	6 cut(s)	365, 446, 518, 778, 791, 891
Eam1104I	CTCTTC	3 cut(s)	125, 254, 422
EarI	CTCTTC	3 cut(s)	125, 254, 422
Eco130I	CCWWGG	3 cut(s)	486, 715, 854
Eco31I	GGTCTC	1 cut(s)	83
Eco57I	CTGAAG	2 cut(s)	794, 908
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoRII	CCWGG	3 cut(s)	376, 583, 925
EcoT14I	CCWWGG	3 cut(s)	486, 715, 854
ErhI	CCWWGG	3 cut(s)	486, 715, 854
FaeI	CATG	8 cut(s)	397, 455, 619, 737, 791, 858, 879, 898
FalI	AAGNNNNNCTT	6 cut(s)	233, 265, 449, 481, 632, 664
FatI	CATG	8 cut(s)	393, 451, 615, 733, 787, 854, 875, 894
FauI	CCCGC	1 cut(s)	951
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	2 cut(s)	483, 706
FokI	GGATG	5 cut(s)	44, 356, 431, 632, 847
Fsp4HI	GCNGC	2 cut(s)	483, 706
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	2 cut(s)	483, 706
GsuI	CTGGAG	2 cut(s)	399, 909
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	1 cut(s)	526
Hin1II	CATG	8 cut(s)	397, 455, 619, 737, 791, 858, 879, 898
HincII	GTYRAC	1 cut(s)	646
HindII	GTYRAC	1 cut(s)	646
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	179, 220, 387, 908
HpaII	CCGG	1 cut(s)	526
HphI	GGTGA	4 cut(s)	39, 622, 703, 839
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	6 cut(s)	85, 225, 518, 636, 796, 907
Hpy188III	TCNNGA	5 cut(s)	176, 191, 424, 437, 895
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	4 cut(s)	273, 601, 769, 892
HpyCH4III	ACNGT	2 cut(s)	675, 827
HpyCH4IV	ACGT	2 cut(s)	44, 64
HpyCH4V	TGCA	3 cut(s)	476, 686, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	482, 488, 929
HpyF3I	CTNAG	8 cut(s)	17, 161, 177, 192, 218, 456, 635, 919
HpySE526I	ACGT	2 cut(s)	44, 64
Hsp92II	CATG	8 cut(s)	397, 455, 619, 737, 791, 858, 879, 898
Kzo9I	GATC	6 cut(s)	365, 446, 518, 778, 791, 891
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	2 cut(s)	631, 928
Lsp1109I	GCAGC	2 cut(s)	469, 692
LweI	GCATC	1 cut(s)	825
MabI	ACCWGGT	1 cut(s)	583
MaeI	CTAG	1 cut(s)	167
MaeII	ACGT	2 cut(s)	44, 64
MaeIII	GTNAC	4 cut(s)	40, 45, 65, 314
MalI	GATC	6 cut(s)	367, 448, 520, 780, 793, 893
MbiI	CCGCTC	1 cut(s)	958
MboI	GATC	6 cut(s)	365, 446, 518, 778, 791, 891
MflI	RGATCY	3 cut(s)	365, 446, 778
MhlI	GDGCHC	2 cut(s)	628, 742
MluCI	AATT	2 cut(s)	142, 797
MlyI	GAGTC	2 cut(s)	188, 229
MnlI	CCTC	8 cut(s)	103, 156, 317, 374, 377, 519, 562, 741
MroXI	GAANNNNTTC	1 cut(s)	698
MseI	TTAA	2 cut(s)	414, 768
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	2 cut(s)	482, 705
MspI	CCGG	1 cut(s)	526
MspR9I	CCNGG	3 cut(s)	378, 585, 927
MvaI	CCWGG	3 cut(s)	378, 585, 927
MwoI	GCNNNNNNNGC	3 cut(s)	482, 488, 929
NcoI	CCATGG	1 cut(s)	854
NdeII	GATC	6 cut(s)	365, 446, 518, 778, 791, 891
NlaIII	CATG	8 cut(s)	397, 455, 619, 737, 791, 858, 879, 898
NmuCI	GTSAC	1 cut(s)	45
NspI	RCATGY	1 cut(s)	879
NspV	TTCGAA	1 cut(s)	554
PagI	TCATGA	1 cut(s)	894
PciSI	GCTCTTC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	2 cut(s)	387, 908
PkrI	GCNGC	2 cut(s)	484, 707
PleI	GAGTC	2 cut(s)	187, 228
PpsI	GAGTC	2 cut(s)	187, 228
Psp6I	CCWGG	3 cut(s)	376, 583, 925
PspGI	CCWGG	3 cut(s)	376, 583, 925
PstNI	CAGNNNCTG	1 cut(s)	886
PsuI	RGATCY	3 cut(s)	365, 446, 778
PvuII	CAGCTG	2 cut(s)	482, 705
RseI	CAYNNNNRTG	1 cut(s)	300
SalI	GTCGAC	1 cut(s)	644
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	414, 768
SatI	GCNGC	2 cut(s)	483, 706
Sau3AI	GATC	6 cut(s)	365, 446, 518, 778, 791, 891
SchI	GAGTC	2 cut(s)	188, 229
ScrFI	CCNGG	3 cut(s)	378, 585, 927
SduI	GDGCHC	2 cut(s)	628, 742
SexAI	ACCWGGT	1 cut(s)	583
SfaNI	GCATC	1 cut(s)	825
SfcI	CTRYAG	1 cut(s)	288
SfuI	TTCGAA	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	3 cut(s)	649, 689, 741
SmoI	CTYRAG	3 cut(s)	649, 689, 741
Sse9I	AATT	2 cut(s)	142, 797
SsiI	CCGC	1 cut(s)	958
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	3 cut(s)	376, 583, 925
StyI	CCWWGG	3 cut(s)	486, 715, 854
TaaI	ACNGT	2 cut(s)	675, 827
TaiI	ACGT	2 cut(s)	47, 67
TaqI	TCGA	5 cut(s)	10, 425, 554, 645, 944
TasI	AATT	2 cut(s)	142, 797
TfiI	GAWTC	2 cut(s)	387, 908
Tru1I	TTAA	2 cut(s)	414, 768
Tru9I	TTAA	2 cut(s)	414, 768
TscAI	CASTG	2 cut(s)	568, 939
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	2 cut(s)	482, 705
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	5 cut(s)	48, 722, 776, 828, 911
TspGWI	ACGGA	1 cut(s)	618
TspRI	CASTG	2 cut(s)	568, 939
XagI	CCTNNNNNAGG	1 cut(s)	381
XapI	RAATTY	1 cut(s)	797
XceI	RCATGY	1 cut(s)	879
XmiI	GTMKAC	1 cut(s)	645
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.